CX671905

Overview
NameCX671905
Unique NameCX671905
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length827
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13131 contig Csv1_Contig13131:191..1018. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX671905 vs. ExPASy Swiss-Prot
Match: ZN363_HUMAN (RING finger and CHY zinc finger domain-containing protein 1 OS=Homo sapiens GN=RCHY1 PE=1 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 2.235e-35
Identity = 65/140 (46.43%), Postives = 84/140 (60.00%), Query Frame = -2
Query:  368 NFFHCNKCRCCYSMLLKNSHPCVEGAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCDMSKVWEKYDREIAATPMPEAYLNKKVWILCNDCGKTSNVQFHVLAQKCPNCKSYNTRLTRG 787
            +FFHC KC  C +M L+  H C+E     +CP+C E +  +R    VLPCGH +H+ C +EM +   Y CP+C  S  DM++ W + D E+A TPMP  Y N  V ILCNDC   S VQFH+L  KC  C+SYNT    G
Sbjct:  115 DFFHCLKCNLCLAMNLQGRHKCIENVSRQNCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG-YRCPLCMHSALDMTRYWRQLDDEVAQTPMPSEYQNMTVDILCNDCNGRSTVQFHILGMKCKICESYNTAQAGG 253          
BLAST of CX671905 vs. ExPASy Swiss-Prot
Match: ZN363_MOUSE (RING finger and CHY zinc finger domain-containing protein 1 OS=Mus musculus GN=Rchy1 PE=1 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 1.109e-34
Identity = 64/140 (45.71%), Postives = 82/140 (58.57%), Query Frame = -2
Query:  368 NFFHCNKCRCCYSMLLKNSHPCVEGAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCDMSKVWEKYDREIAATPMPEAYLNKKVWILCNDCGKTSNVQFHVLAQKCPNCKSYNTRLTRG 787
            +FFHC KC  C +  L+  H C+E     +CP+C E +  +R    VLPCGH +H+ C +EM +   Y CP+C  S  DM++ W + D E+A TPMP  Y N  V ILCNDC   S VQFH+L  KC  C SYNT    G
Sbjct:  115 DFFHCLKCNLCLTTNLRGKHKCIENVSRQNCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG-YRCPLCMHSALDMTRYWRQLDTEVAQTPMPSEYQNVTVDILCNDCNGRSTVQFHILGMKCKLCDSYNTAQAGG 253          
BLAST of CX671905 vs. ExPASy Swiss-Prot
Match: YERG_SCHPO (Uncharacterized RING finger protein C2F3.16 OS=Schizosaccharomyces pombe GN=SPAC2F3.16 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.605e-25
Identity = 50/135 (37.04%), Postives = 77/135 (57.04%), Query Frame = -2
Query:  383 NFFHCNKCRCCYSMLLKNSHPCVEGAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCDMSKVWEKYDREIAATPMPEAYLNKKVWILCNDCGKTSNVQFHVLAQKCPNCKSYNT 787
            ++FHC  C  C  + + N+H C+E +   +CP+C EY+F +R+ VI L C H +H+ C +E    + Y CP C K++ +++ ++   D EI   PMP  Y      I CNDC    + ++H L  KC +C SYNT
Sbjct:  241 DYFHCKTCGLCLPISVFNTHRCIERSTDCNCPICGEYMFNSRERVIFLSCSHPLHQRCHEEYIRTN-YRCPTCYKTIINVNSLFRILDMEIERQPMPYPYNTWISTIRCNDCNSRCDTKYHFLGHKCNSCHSYNT 374          
The following BLAST results are available for this feature:
BLAST of CX671905 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
ZN363_HUMAN2.235e-3546.43RING finger and CHY zinc finger domain-containing ... [more]
ZN363_MOUSE1.109e-3445.71RING finger and CHY zinc finger domain-containing ... [more]
YERG_SCHPO1.605e-2537.04Uncharacterized RING finger protein C2F3.16 OS=Sch... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS10_13G12_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-13G12-M23-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671905 ID=CX671905; Name=CX671905; organism=Citrus sinensis; type=EST; length=827bp
GAAAAACATTACTTATTTGCAAAGTGAGTAAGAAGTTCATCCCAGCACCA
GTATGAGCTAGTTGCTATGACTATTTACATCAGTTGCCTTGAGGAAACAT
ACAACAAAGAACAAATGAAATGAAAAACAAGAAGACAGAAAACAACACCA
TGAGCAGATTCAAACACCACGAGCTAGACTAGAAACACCACGAGGAAGAC
TAACTGCTCCCCACAGAGCAAGTTGTAGATGCAGCCACTACCCCATAATG
AGTAACGACTGTGGCTGAGATGGTTGAAAAGATTAATTAAGACCCGAACC
CATCCACATCAAACAGAGAGTTCCCATCACCATCACCATCATTGCTAACA
ATACTGCCACTTGCTCAGCCCCTGGTCAAGCGAGTGTTGTAGGACTTGCA
GTTTGGGCACTTCTGAGCCAGCACATGGAACTGGACATTAGAGGTCTTAC
CACAGTCATTGCAAAGGATCCAAACCTTTTTATTTAGGTAAGCTTCTGGC
ATTGGAGTAGCCGCTATCTCCCTGTCATATTTCTCCCATACTTTGGACAT
GTCACAGACTGACTTGGAGCAGATAGGACAGGCATATTGATGATGTTCCC
GCATCTCCTTCAAGCAATTTTTGTGAATGGTATGCCCACACGGCAAGACA
ATTACATCCTGTCTTGTCTCGAATAAATACTCACAGCAGACAGGGCAGTC
ATGATGCATTGCACCTTCTACACATGGGTGGCTGTTCTTCAAAAGCATTG
AGTAGCAGCATCTACACTTGTTGCAATGGAAGAAATTATCACATCCACCA
ATCCTGCATATTCCACATCCATCACAA
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