CX671898

Overview
NameCX671898
Unique NameCX671898
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length864
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8816 contig Csv1_Contig8816:96..959. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX671898 vs. ExPASy Swiss-Prot
Match: TSJT1_TOBAC (Stem-specific protein TSJT1 OS=Nicotiana tabacum GN=TSJT1 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 5.495e-24
Identity = 49/87 (56.32%), Postives = 66/87 (75.86%), Query Frame = -2 
Query:  600 NESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVA 860
            NE+PL+ RS  V D++FC+F GALDN   LR+ YGL++ A E ++++EAYK LRDRAPYPP+ V+  L G FAFI++D   STLF+A
Sbjct:   62 NENPLQPRSIVVMDDVFCIFSGALDNTFDLRKHYGLSRQATEAMIMVEAYKVLRDRAPYPPDQVIKELEGKFAFILFDSKASTLFLA 148
The following BLAST results are available for this feature:
BLAST of CX671898 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
TSJT1_TOBAC5.495e-2456.32Stem-specific protein TSJT1 OS=Nicotiana tabacum G... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS10_13G08_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-13G08-M15-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671898 ID=CX671898; Name=CX671898; organism=Citrus sinensis; type=EST; length=864bp
TTTTTTTTTTTTTTAGTTCGAACACTGGGACAAGACTTTATTAAACAGCA
AACATAACTGTACATTGGACAAGACTGGATAAAAGGTTAATTTGAAAGCA
AACACCTAAGAAACTTGAAAGGAGCTATAGCTACAAAGAAAGCTGGGTGC
TACATTTCTCACAAGCATACACTATTTCCATTCCAGTTGATGATTTTTTG
CTACACTCATTTTGTTATTCACATGGACCCTCTTGCAGCTTGCATCCCCA
CAAACTTTTTTTCCCCCAAACCGCGGATTTTTAACTGTTGGCTAATATCT
CAAGTGGAGAAGAAAGATCTTCTAACCTTCTACTCTGTGGCTGCAAAAAC
TGCTGGCCCTTCCACCTTAAATGTAGCACCCCAGATCTCTTCTTCCGCAG
CAGGAACCGCAGTGATCTTGTTCTTTGGATTCTCAAAGCTTCTCAGTCCT
CCAACTGCTGTTGAGAAGAAACAACCTTGAGGGAAAGAAGCAAGTGACTT
GCCGCAAGCACCTTTGAGCAAGTCAGCATCATCAGCAAAGGCAACATGTC
CATCAGCAGTGATTCCCCAATAAAGAGGAACCTTACCAAATTGGTCAGAA
GCCACAAACAAGGTGGAGGTGGACTTGTCGTAGACAATGAAGGCAAAGTA
CCCACTAAGGTGGCCAACGACATGGTTCGGTGGGTAAGGGGCCCGATCAC
GCAGAGCCTTGTATGCCTCAATCACCAAGATCACTTCATTTGCCGACTTA
GCTAGTCCATATTGCTGCCTCAGGCTTCCCAAGTTATCAAGTGCTCCCTC
AAACAAGCAAAAGATCTCATCTTTCACAGCAAATGATCTTTGCCGTAAAG
GAGACTCGTTCTGA
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