CX671874

Overview
NameCX671874
Unique NameCX671874
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length808
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671874 vs. ExPASy Swiss-Prot
Match: KRP4_ORYSJ (Cyclin-dependent kinase inhibitor 4 OS=Oryza sativa subsp. japonica GN=KRP4 PE=2 SV=2)

HSP 1 Score: 117.087 bits (292), Expect = 1.175e-25
Identity = 58/111 (52.25%), Postives = 79/111 (71.17%), Query Frame = -3
Query:  462 KNLDIEASFG-ENALESEARERGTRESTPCSLIRDPEIIRTPGSSNRPTSSMQNREAQISA-CSLIPTAHEMDKFFADTEEEQQRQFIEKYNYDPVNDKPLPGHFKWQKVD 788
            ++ + E SFG EN LE EA ER TRE+TPCSLIRDP+ I TPGS+ R + S  + + Q     ++IP + E++ FFA  E+ Q++ FI+KYN+DPVND PLPG F+W K+D
Sbjct:   84 ESAEAEVSFGGENVLELEAMERNTRETTPCSLIRDPDTISTPGSTTRRSHSSSHCKVQTPVRHNIIPASAELEAFFAAEEQRQRQAFIDKYNFDPVNDCPLPGRFEWVKLD 194          
BLAST of CX671874 vs. ExPASy Swiss-Prot
Match: KRP4_ARATH (Cyclin-dependent kinase inhibitor 4 OS=Arabidopsis thaliana GN=KRP4 PE=1 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 2.895e-24
Identity = 58/113 (51.33%), Postives = 75/113 (66.37%), Query Frame = -3
Query:  462 EASFGENALESEARE-----RGTRESTPCSLIRDPEIIRTPGSSNR----PTSSMQNREAQISACSLIPTAHEMDKFFADTEEEQQRQFIEKYNYDPVNDKPLPGHFKWQKVD 773
            + +FG+N  + E        R TRESTPCSLIR PEI+ TPGSS +     + S Q  ++   +    PT  EMD+FF+  EEEQQ+QFIEKYN+DPVN++PLPG F+W KVD
Sbjct:  176 DPTFGQNFFDLEEEHTQSFNRTTRESTPCSLIRRPEIMTTPGSSTKLNICVSESNQREDSLSRSHRRRPTTPEMDEFFSGAEEEQQKQFIEKYNFDPVNEQPLPGRFEWTKVD 288          
BLAST of CX671874 vs. ExPASy Swiss-Prot
Match: KRP5_ORYSJ (Cyclin-dependent kinase inhibitor 5 OS=Oryza sativa subsp. japonica GN=KRP5 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.781e-24
Identity = 51/109 (46.79%), Postives = 78/109 (71.56%), Query Frame = -3
Query:  462 DIEASFGENALE--SEARERGTRESTPCSLIRDPEIIRTPGSSNRPTSSMQNREA-QISACSLIPTAHEMDKFFADTEEEQQRQFIEKYNYDPVNDKPLPGHFKWQKVD 779
            ++E SFG+N L+   +A ER TRE+TPCSLIR  E+I TPGS+ +  +S+ +R   + S C  +P++ EM++FFA  E++Q + F E+YN+ PVND PLPG ++W ++D
Sbjct:  112 EVEVSFGDNVLDLDGDAMERSTRETTPCSLIRSSEMISTPGSTTKTNTSISSRRRMETSVCRYVPSSLEMEEFFAAAEQQQHQAFRERYNFCPVNDCPLPGRYEWTRLD 220          
BLAST of CX671874 vs. ExPASy Swiss-Prot
Match: KRP3_ARATH (Cyclin-dependent kinase inhibitor 3 OS=Arabidopsis thaliana GN=KRP3 PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 6.673e-21
Identity = 53/116 (45.69%), Postives = 76/116 (65.52%), Query Frame = -3
Query:  459 EEENGNKNLDIEASFGENALESEARERGTRESTPCSLIRDPEIIRTPGSSNRPTSSMQNREAQISACSLIPTAHEMDKFFADTEEEQQRQFIEKYNYDPVNDKPLPGHFKWQKVDP 806
            E+E  +  + ++ S GEN+L  E+R   TRESTPC+ + D EI+ TPGSS R +     +E      ++IPT  EM++FFA  E++QQR F+EKYN+D VND PL G ++W +V P
Sbjct:  109 EDECFDNFVSVQVSCGENSLGFESRH-STRESTPCNFVEDMEIMVTPGSSTR-SMCRATKEYTREQDNVIPTTSEMEEFFAYAEQQQQRLFMEKYNFDIVNDIPLSGRYEWVQVKP 222          
The following BLAST results are available for this feature:
BLAST of CX671874 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
KRP4_ORYSJ1.175e-2552.25Cyclin-dependent kinase inhibitor 4 OS=Oryza sativ... [more]
KRP4_ARATH2.895e-2451.33Cyclin-dependent kinase inhibitor 4 OS=Arabidopsis... [more]
KRP5_ORYSJ3.781e-2446.79Cyclin-dependent kinase inhibitor 5 OS=Oryza sativ... [more]
KRP3_ARATH6.673e-2145.69Cyclin-dependent kinase inhibitor 3 OS=Arabidopsis... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS10_13F08_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-13F08-K15-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671874 ID=CX671874; Name=CX671874; organism=Citrus sinensis; type=EST; length=808bp
TTTTTTTTTTTTTTTTTGGGTCATGTTTATTCCAAGGAGTTTTTTCAAGT
TCCATCCAGTACATGTATAAACAAAGAAGAGGATGAAATTACGGTACACA
GAAAAAGATCTAGTAAATTTTTGTACCTGATACACTGACCTATGTTTTAA
ACTGAAACCTAACCCTAAAACCTCTTTTCCCTTCTCCTATTACATGATAT
GTTAGACAAAAGGACTTTGGTTTGTATTTGCTTTGTAACTCATAACACCC
CTCCTGTTATGTTACAGACCATTAGTCTACACATATCTTTGATAGTCCTA
CTACTCCTTTTCTTTACAAGTAAAATAAGAGTGGTGACGGAAAATGGAAT
GGACACCGTCACCGTTAGTGCAACCTAAAACTAATTCCTGCTAATTCGTC
AATTCCTAAGCTCAAGATCAACCCAGAATTTGCAGGAAAATATCAAGTCT
GTCTCCTATGGGTCAACTTTCTGCCATTTGAAATGGCCAGGGAGCGGCTT
ATCATTCACGGGATCATAGTTGTACTTCTCAATAAATTGTCTTTGCTGCT
CTTCTTCTGTATCAGCAAAGAACTTATCCATTTCATGTGCTGTTGGGATG
AGACTGCACGCAGAAATCTGTGCTTCCCTGTTCTGCATTGAGCTGGTAGG
CCTGTTGCTGGAACCCGGGGTCCTTATGATCTCTGGGTCCCTTATCAAGC
TGCATGGAGTGGACTCCCTAGTGCCCCTTTCTCTTGCTTCACTTTCCAAA
GCATTTTCACCAAAGGAAGCTTCAATGTCCAAATTCTTATTGCCATTTTC
TTCTTCTT
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