CX671862

Overview
NameCX671862
Unique NameCX671862
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length690
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671862 vs. ExPASy Swiss-Prot
Match: CYP38_ARATH (Peptidyl-prolyl cis-trans isomerase CYP38, chloroplastic OS=Arabidopsis thaliana GN=CYP38 PE=1 SV=1)

HSP 1 Score: 287.73 bits (735), Expect = 3.844e-77
Identity = 138/163 (84.66%), Postives = 153/163 (93.87%), Query Frame = -3
Query:  200 FVDLVQRHFYDGMEIQRADGFVVQTGDPEGPAEGFIDPSTEKTRTIPLEIMVEGGKSPFYGATLEELGLYKAQTKLPFNAFGTMAMARDEFEDNFGSNQVFWVLKERELTPSNANILDGRYAVFGYVTEKEGFLADVKVGDVIQSIQVVSGLENFVNPSYKIA 688
            FVDLV+RHFYDGMEIQR+DGFVVQTGDPEGPAEGFIDPSTEKTRT+PLEIMV G K+PFYG+TLEELGLYKAQ  +PFNAFGTMAMAR+EFE++ GS+QVFW+LKE ELTPSN+NILDGRYAVFGYVT+ E FLAD+KVGDVI+SIQVVSGLEN  NPSYKIA
Sbjct:  274 FVDLVERHFYDGMEIQRSDGFVVQTGDPEGPAEGFIDPSTEKTRTVPLEIMVTGEKTPFYGSTLEELGLYKAQVVIPFNAFGTMAMAREEFENDSGSSQVFWLLKESELTPSNSNILDGRYAVFGYVTDNEDFLADLKVGDVIESIQVVSGLENLANPSYKIA 436          
BLAST of CX671862 vs. ExPASy Swiss-Prot
Match: TLP40_SPIOL (Peptidyl-prolyl cis-trans isomerase, chloroplastic OS=Spinacia oleracea GN=TLP40 PE=1 SV=1)

HSP 1 Score: 284.263 bits (726), Expect = 4.250e-76
Identity = 135/163 (82.82%), Postives = 152/163 (93.25%), Query Frame = -3
Query:  200 FVDLVQRHFYDGMEIQRADGFVVQTGDPEGPAEGFIDPSTEKTRTIPLEIMVEGGKSPFYGATLEELGLYKAQTKLPFNAFGTMAMARDEFEDNFGSNQVFWVLKERELTPSNANILDGRYAVFGYVTEKEGFLADVKVGDVIQSIQVVSGLENFVNPSYKIA 688
            F+DLV+RHFYDGMEIQR DGFVVQTGDPEGPAEGFIDPSTEK RTIPLEIMVEG K P YG+TLEELGLYKAQTKLPFNAFGTMAMAR+EFE+N GS+Q+FW+LKE ELTPSNANILDGRYAVFGYVT+ + +LAD+KVGDVI+S+Q VSG++N VNP+YKIA
Sbjct:  286 FLDLVERHFYDGMEIQRRDGFVVQTGDPEGPAEGFIDPSTEKPRTIPLEIMVEGEKVPVYGSTLEELGLYKAQTKLPFNAFGTMAMAREEFENNSGSSQIFWLLKESELTPSNANILDGRYAVFGYVTDNQDYLADLKVGDVIESVQAVSGVDNLVNPTYKIA 448          
BLAST of CX671862 vs. ExPASy Swiss-Prot
Match: PPI3_SYNY3 (Putative thylakoid lumen peptidyl-prolyl cis-trans isomerase sll0408 OS=Synechocystis sp. (strain PCC 6803) GN=sll0408 PE=3 SV=2)

HSP 1 Score: 168.318 bits (425), Expect = 3.399e-41
Identity = 84/158 (53.16%), Postives = 109/158 (68.99%), Query Frame = -3
Query:  218 FVDLVQRHFYDGMEIQRA-DGFVVQTGDPEGPAEGFIDPSTEKTRTIPLEIMVEGGKSPFYGATLEELGLYKAQTKLPFNAFGTMAMARDEFEDNFGSNQVFWVLKERELTPSNANILDGRYAVFGYVTEKEGFLADVKVGDVIQSIQVVSGLENFVN 688
            FVDLVQR FYDG+   R+ D FV Q GDP GP  GFIDP T++ R IPLEI+V+G + P YG TLE+ G+Y  +  LPFNA+G +A+AR E E N GS+Q F+   + ELTP   N++DGRY+VFGYV + +  L  +  GD I S +V+SG +N VN
Sbjct:  219 FVDLVQRKFYDGLPFIRSEDFFVTQAGDPPGPEAGFIDPQTKEYRAIPLEILVKGEEGPIYGMTLEDAGMYLPELALPFNAYGAIALARPETEPNGGSSQFFFFKFDTELTPPGFNLMDGRYSVFGYVVDGKETLEQLSEGDKIVSAKVISGADNLVN 376          
BLAST of CX671862 vs. ExPASy Swiss-Prot
Match: PPI1_SYNY3 (Probable peptidyl-prolyl cis-trans isomerase sll0227 OS=Synechocystis sp. (strain PCC 6803) GN=sll0227 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.144e-19
Identity = 62/161 (38.51%), Postives = 89/161 (55.28%), Query Frame = -3
Query:  227 FVDLVQRHFYDGMEIQRA-DGFVVQTGDPEGPAEG-FIDPSTEKTRTIPLEIMVEGG-----KSPFYGATLEELGLYKAQTKLPFNAFGTMAMARDEFEDNFGSNQVFWVLKERELTPSNANILDGRYAVFGYVTEKEGFLADVKVGDVIQSIQVVSGLEN 688
            FVDLV++ FY+G+   R  DGFV Q GDP+G   G ++D +T++ R IPLEI V+       ++P Y   L     +     LP    G +AMAR +  D+  S+Q ++ L +          LDG YAVFGYVT+    +  +K GD IQS +V++G  N
Sbjct:   93 FVDLVEQGFYNGLTFHRVVDGFVAQGGDPKGDGTGGYVDKNTQRPRNIPLEIKVDPAVENAPETPVYSRALGNQAGFPVM--LPHKT-GAVAMARSQMPDS-ASSQFYFTLSDE------TGFLDGDYAVFGYVTQGMDVVLKIKQGDKIQSAKVITGQNN 243          
The following BLAST results are available for this feature:
BLAST of CX671862 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
CYP38_ARATH3.844e-7784.66Peptidyl-prolyl cis-trans isomerase CYP38, chlorop... [more]
TLP40_SPIOL4.250e-7682.82Peptidyl-prolyl cis-trans isomerase, chloroplastic... [more]
PPI3_SYNY33.399e-4153.16Putative thylakoid lumen peptidyl-prolyl cis-trans... [more]
PPI1_SYNY32.144e-1938.51Probable peptidyl-prolyl cis-trans isomerase sll02... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS10_13F01_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-13F01-K1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671862 ID=CX671862; Name=CX671862; organism=Citrus sinensis; type=EST; length=690bp
TTTTTTTTTTTTTTTTTCCAAAAAAATGCCCCGTCGTTTTGATTACTACA
ATTCTCTCGAAAGGAAAAAAAAAGGGAAAGTTATTGAACAAATAACAAAT
TCATAGTTTGAAACCAAATATAAAGTAATCGGCTTTAAATCGATTAATTT
GTCATTAGGGTCCCCCATAATCAAAAACCGATGATTGAAAGGTCTAAGCA
GCAATCTTGTAGCTTGGGTTGACAAAATTTTCCAGGCCGGACACTACTTG
AATTGATTGAATCACGTCCCCAACCTTGACATCCGCCAAAAAACCTTCTT
TTTCCGTCACATAACCAAACACTGCATATCGGCCATCCAAAATATTGGCA
TTACTAGGAGTTAATTCCCTTTCTTTTAAAACCCAAAATACCTGGTTTGA
ACCAAAGTTATCCTCAAACTCATCTCTAGCCATCGCCATCGTTCCAAAAG
CATTAAAGGGAAGCTTTGTTTGAGCCTTGTAAAGACCAAGCTCCTCCAAA
GTAGCTCCATAAAAAGGTGACTTCCCCCCTTCCACCATGATTTCCAAGGG
TATTGTCCGGGTTTTTTCTGTACTAGGATCAATAAAACCCTCAGCAGGAC
CTTCAGGATCGCCTGTTTGAACGACAAAGCCATCCGCTCTTTGGATTTCC
ATGCCATCATAAAAGTGCCTCTGCACCAAATCAACAAAAT
back to top