DY306019

Overview
NameDY306019
Unique NameDY306019
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length788
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY306019 vs. ExPASy Swiss-Prot
Match: PME3_CITSI (Pectinesterase 3 OS=Citrus sinensis PE=1 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 3.590e-64
Identity = 135/183 (73.77%), Postives = 140/183 (76.50%), Query Frame = 2
Query:   29 MTRIKEFFTKLSESSTNQNISNIPXXXXXXXXXXXXXXXXXXXXXXXXXXXNSRKNSGDNGNEPHHAILKSSCSSTRYPDLCFSAIAAVPEASKKVTSQKDVIEMSLNITTTAVEHNYFGIQKLLKRTNLTKREKVALPDCLERIYETLDELR*AVDDLEE*PEKIILLVNWHDDLKFVVDCS 577
            MTRIKEFFTKLSESSTNQNISNIP                           NSRKNSGDNGNEPHHAILKSSCSSTRYPDLCFSAIAAVPEASKKVTSQKDVIEMSLNITTTAVEHNYFGIQKLLKRTNLTKREKVAL DCLE I ETLDEL  AV+DLEE P K  L  +  DDLK ++  +
Sbjct:    1 MTRIKEFFTKLSESSTNQNISNIPKKKKKLFLALFATLLVVAAVIGIVAGVNSRKNSGDNGNEPHHAILKSSCSSTRYPDLCFSAIAAVPEASKKVTSQKDVIEMSLNITTTAVEHNYFGIQKLLKRTNLTKREKVALHDCLETIDETLDELHKAVEDLEEYPNKKSLSQH-ADDLKTLMSAA 182          
BLAST of DY306019 vs. ExPASy Swiss-Prot
Match: PME1_CITSI (Pectinesterase 1 OS=Citrus sinensis GN=PECS-1.1 PE=2 SV=1)

HSP 1 Score: 241.506 bits (615), Expect = 3.970e-63
Identity = 133/183 (72.68%), Postives = 139/183 (75.96%), Query Frame = 2
Query:   29 MTRIKEFFTKLSESSTNQNISNIPXXXXXXXXXXXXXXXXXXXXXXXXXXXNSRKNSGDNGNEPHHAILKSSCSSTRYPDLCFSAIAAVPEASKKVTSQKDVIEMSLNITTTAVEHNYFGIQKLLKRTNLTKREKVALPDCLERIYETLDELR*AVDDLEE*PEKIILLVNWHDDLKFVVDCS 577
            MT IKEFFTKLSESS+NQNISNIP                           NSRKNSGDNGNEPHHAILKSSCSSTRYPDLCFSAIAAVPEASKKVTSQKDVIEMSLNITTTAVEHNYFGIQKLLKRTNLTKREKVAL DCLE I ETLDEL  AV+DLEE P K  L  +  DDLK ++  +
Sbjct:    1 MTHIKEFFTKLSESSSNQNISNIPKKKKKLFLALFATLLVVAAVIGIVAGVNSRKNSGDNGNEPHHAILKSSCSSTRYPDLCFSAIAAVPEASKKVTSQKDVIEMSLNITTTAVEHNYFGIQKLLKRTNLTKREKVALHDCLETIDETLDELHKAVEDLEEYPNKKSLSQH-ADDLKTLMSAA 182          
BLAST of DY306019 vs. ExPASy Swiss-Prot
Match: PMEU1_SOLLC (Pectinesterase/pectinesterase inhibitor U1 OS=Solanum lycopersicum GN=PMEU1 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.576e-27
Identity = 68/117 (58.12%), Postives = 85/117 (72.65%), Query Frame = 2
Query:  191 KNSGDNGN-----EPHHAILKSSCSSTRYPDLCFSAIAAVPEASKKVTSQKDVIEMSLNITTTAVEHNYFGIQKLLK-RTNLTKREKVALPDCLERIYETLDELR*AVDDLEE*PEK 523
            KNS D+ +        HAI+KS+CS+T +P+LC+SAI  V + SKKVTSQKDVIE+SLNIT  AV  NY+ +++L+K R  LT REKVAL DCLE + ETLDEL  AV+DLE  P K
Sbjct:   47 KNSDDHADIMAISSSAHAIVKSACSNTLHPELCYSAIVNVSDFSKKVTSQKDVIELSLNITVKAVRRNYYAVKELIKTRKGLTPREKVALHDCLETMDETLDELHTAVEDLELYPNK 163          
BLAST of DY306019 vs. ExPASy Swiss-Prot
Match: PME2_ARATH (Pectinesterase 2 OS=Arabidopsis thaliana GN=PME2 PE=2 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 4.584e-27
Identity = 69/116 (59.48%), Postives = 86/116 (74.14%), Query Frame = 2
Query:  224 HAILKSSCSSTRYPDLCFSAIAAVPEASKKVTSQKDVIEMSLNITTTAVEHNYFGIQKLL-KRTNLTKREKVALPDCLERIYETLDELR*AVDDLEE*PEKIILLVNWHDDLKFVV 568
            HAILKS CSST YP+LCFSA+AA     K++TSQK+VIE SLN+TT AV+HNYF ++KL+ KR  LT RE  AL DCLE I ETLDEL  AV+DL + P++  L  +  DDLK ++
Sbjct:   59 HAILKSVCSSTLYPELCFSAVAAT--GGKELTSQKEVIEASLNLTTKAVKHNYFAVKKLIAKRKGLTPREVTALHDCLETIDETLDELHVAVEDLHQYPKQKSLRKH-ADDLKTLI 171          
BLAST of DY306019 vs. ExPASy Swiss-Prot
Match: PME3_ARATH (Pectinesterase/pectinesterase inhibitor 3 OS=Arabidopsis thaliana GN=PME3 PE=2 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 8.646e-26
Identity = 65/114 (57.02%), Postives = 79/114 (69.30%), Query Frame = 2
Query:  185 SRKNSGDNGNEPHHAILKSSCSSTRYPDLCFSAIAAVPEASKKVTSQKDVIEMSLNITTTAVEHNYFGIQKLL-KRTNLTKREKVALPDCLERIYETLDELR*AVDDLEE*PEK 523
            S+ N     +   HA+L+SSCSSTRYP+LC SA+  V     ++TSQKDVIE S+N+T TAVEHNYF ++KL+ KR  LT REK AL DCLE I ETLDEL   V+DL   P K
Sbjct:   43 SKANEKRTLSPSSHAVLRSSCSSTRYPELCISAV--VTAGGVELTSQKDVIEASVNLTITAVEHNYFTVKKLIKKRKGLTPREKTALHDCLETIDETLDELHETVEDLHLYPTK 154          
The following BLAST results are available for this feature:
BLAST of DY306019 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
PME3_CITSI3.590e-6473.77Pectinesterase 3 OS=Citrus sinensis PE=1 SV=1[more]
PME1_CITSI3.970e-6372.68Pectinesterase 1 OS=Citrus sinensis GN=PECS-1.1 PE... [more]
PMEU1_SOLLC1.576e-2758.12Pectinesterase/pectinesterase inhibitor U1 OS=Sola... [more]
PME2_ARATH4.584e-2759.48Pectinesterase 2 OS=Arabidopsis thaliana GN=PME2 P... [more]
PME3_ARATH8.646e-2657.02Pectinesterase/pectinesterase inhibitor 3 OS=Arabi... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAM3BB03RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY306019 ID=DY306019; Name=DY306019; organism=Citrus sinensis; type=EST; length=788bp
GTTTTGTTCTCTCTTATCGAGAAAAAAAATGACCCGCATAAAAGAATTCT
TCACAAAACTTTCTGAATCTTCTACCAACCAAAACATTTCCAATATTCCC
AAGAAAAAAAAGAAACTATTCTTAGCTCTTTTTGCAACGCTACTCGTTGT
CGCTGCCGTAATCGGCATTGTCGCCGGAGTGAACTCAAGAAAAAACTCCG
GCGACAACGGCAACGAGCCTCATCATGCTATCCTCAAATCATCATGTAGC
AGCACAAGGTACCCGGACTTATGCTTTTCGGCTATTGCTGCCGTTCCAGA
GGCCTCCAAAAAGGTGACAAGCCAAAAGGACGTTATTGAGATGTCCTTAA
ACATCACAACAACAGCCGTGGAACACAACTACTTCGGGATTCAGAAGCTC
TTGAAGAGAACGAATCTCACCAAACGGGAAAAGGTTGCTCTCCCTGACTG
TCTTGAGAGGATCTATGAGACTCTTGATGAGTTGCGCTAAGCCGTCGATG
ATCTTGAGGAGTGACCCGAAAAAATAATTCTTTTAGTCAACTGGCATGAT
GATCTCAAATTCGTAGTTGATTGCAGCAGTGAACCAATTAGAGGGATGNA
ATAAGGAGAGCTTATNTTGAGATAGGAATTTAACAATCATGAGTGGGGAA
TCAGTNCCAGGGAGTCGAAAGTTAAGNGTGAAAAGAAGTGAGGNCTTTGC
NCNNTGANAAACCAATACNNNNAGCGGNATCNGAGTNATNTGTCTGTGTA
TCTGNAATGTATTCNGACNNGAATAAAGACNAAATNTT
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