FC871779

Overview
NameFC871779
Unique NameFC871779
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length463
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5158 contig Csv1_Contig5158:495..957. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC871779 vs. ExPASy Swiss-Prot
Match: BRI1_ARATH (Protein BRASSINOSTEROID INSENSITIVE 1 OS=Arabidopsis thaliana GN=BRI1 PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 4.126e-25
Identity = 55/71 (77.46%), Postives = 64/71 (90.14%), Query Frame = 2 
Query:    2 IEIELLQHLHVASACLDDRPWRRPTMIQVMAMFKEIQAGSGLDSQSTI-ATDEGGFGTVEMVEMSIQEAPE 211
            +EIELLQHL VA ACLDDR WRRPTM+QVMAMFKEIQAGSG+DSQSTI + ++GGF T+EMV+MSI+E PE
Sbjct: 1123 LEIELLQHLKVAVACLDDRAWRRPTMVQVMAMFKEIQAGSGIDSQSTIRSIEDGGFSTIEMVDMSIKEVPE 1193
[Close]
BLAST of FC871779 vs. ExPASy Swiss-Prot
Match: BRI1_SOLPE (Systemin receptor SR160 OS=Solanum peruvianum PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 6.817e-20
Identity = 53/77 (68.83%), Postives = 59/77 (76.62%), Query Frame = 2 
Query:    2 IEIELLQHLHVASACLDDRPWRRPTMIQVMAMFKEIQAGSGLDSQSTIATDEGGF----GTVEM-VEMSIQEAPELS 217
            IEIELLQHL VA ACLDDR W+RPTMIQVMAMFKEIQAGSG+DS STI  D+  F    G +EM +  SI+E  ELS
Sbjct: 1128 IEIELLQHLKVACACLDDRHWKRPTMIQVMAMFKEIQAGSGMDSTSTIGADDVNFSGVEGGIEMGINGSIKEGNELS 1204
[Close]
BLAST of FC871779 vs. ExPASy Swiss-Prot
Match: BRI1_SOLLC (Brassinosteroid LRR receptor kinase OS=Solanum lycopersicum GN=CURL3 PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 6.817e-20
Identity = 53/77 (68.83%), Postives = 59/77 (76.62%), Query Frame = 2 
Query:    2 IEIELLQHLHVASACLDDRPWRRPTMIQVMAMFKEIQAGSGLDSQSTIATDEGGF----GTVEM-VEMSIQEAPELS 217
            IEIELLQHL VA ACLDDR W+RPTMIQVMAMFKEIQAGSG+DS STI  D+  F    G +EM +  SI+E  ELS
Sbjct: 1128 IEIELLQHLKVACACLDDRHWKRPTMIQVMAMFKEIQAGSGMDSTSTIGADDVNFSGVEGGIEMGINGSIKEGNELS 1204
The following BLAST results are available for this feature:
BLAST of FC871779 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
BRI1_ARATH4.126e-2577.46Protein BRASSINOSTEROID INSENSITIVE 1 OS=Arabidops... [more]
BRI1_SOLPE6.817e-2068.83Systemin receptor SR160 OS=Solanum peruvianum PE=1... [more]
BRI1_SOLLC6.817e-2068.83Brassinosteroid LRR receptor kinase OS=Solanum lyc... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAK3BE10FM1 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK3BE10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871779 ID=FC871779; Name=FC871779; organism=Citrus sinensis; type=EST; length=463bp
CATCGAGATTGAGCTTCTTCAACACTTGCATGTAGCGAGTGCTTGCCTGG
ATGATCGACCATGGAGGAGACCGACAATGATTCAGGTTATGGCAATGTTT
AAAGAAATCCAAGCCGGTTCAGGACTTGACTCGCAATCTACTATTGCCAC
TGATGAAGGAGGTTTCGGTACAGTCGAAATGGTAGAGATGAGCATCCAAG
AAGCTCCAGAACTAAGCACCAAGCCTTAAGCCATTCAATTTTCAGGACAA
GCATTCTTTCAGTGCCCCAAAATTTTCCCACTTGAAAACCAAAAAAGTTG
CCTTTGTATCTCTACCATTTAGTGTATGTAATCTTTGTATCCCTTTTGAA
AATTCTTGTTATTTATACATAAAAAAAAAAAAGTTGCTTTTAACTTTGTT
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAA
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