CX671780

Overview
NameCX671780
Unique NameCX671780
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length883
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13422 contig Csv1_Contig13422:108..990. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX671780 vs. ExPASy Swiss-Prot
Match: COBRA_ARATH (Protein COBRA OS=Arabidopsis thaliana GN=COB PE=2 SV=1)

HSP 1 Score: 278.485 bits (711), Expect = 3.533e-74
Identity = 122/146 (83.56%), Postives = 132/146 (90.41%), Query Frame = -1
Query:  446 MVQCPSHMCPIRVHWHVKLNYREYWRVKITITNFNYAMNYSLWNLVVQHPNFDNLTQLFSFYYKSLTPYEGLNDTAMLWGIKFYNDFLSEAGSNGNVQSELLFRKDASTFTFEKGWAFPRRIYFNGDNCVMPPPDAYPWLPNASSR 883
            +VQC  HMCPIRVHWHVK NY+EYWRVKITITNFNY +NY+ WNLV QHPN DN+TQ+FSF YKSLTPY GLNDTAMLWG+KFYNDFLSEAG  GNVQSE+LFRKD STFTFEKGWAFPRRIYFNGDNCVMPPPD+YP+LPN  SR
Sbjct:  290 LVQCTRHMCPIRVHWHVKQNYKEYWRVKITITNFNYRLNYTQWNLVAQHPNLDNITQIFSFNYKSLTPYAGLNDTAMLWGVKFYNDFLSEAGPLGNVQSEILFRKDQSTFTFEKGWAFPRRIYFNGDNCVMPPPDSYPFLPNGGSR 435          
BLAST of CX671780 vs. ExPASy Swiss-Prot
Match: COBL1_ORYSJ (COBRA-like protein 1 OS=Oryza sativa subsp. japonica GN=BC1L6 PE=2 SV=1)

HSP 1 Score: 273.092 bits (697), Expect = 1.485e-72
Identity = 118/146 (80.82%), Postives = 131/146 (89.73%), Query Frame = -1
Query:  446 MVQCPSHMCPIRVHWHVKLNYREYWRVKITITNFNYAMNYSLWNLVVQHPNFDNLTQLFSFYYKSLTPYEGLNDTAMLWGIKFYNDFLSEAGSNGNVQSELLFRKDASTFTFEKGWAFPRRIYFNGDNCVMPPPDAYPWLPNASSR 883
            +VQC SHMCPIRVHWHVK+NY+EYWRVKIT+TNFNY MNYS WNLV QHP+FDNLT +FSF YKSL PY  +NDTAMLWGIK+YND L  AG +GNVQSELLF+KD  +FTFEKGWAFPRR+YFNGDNCVMPPPDAYPWLPNAS+R
Sbjct:  278 LVQCTSHMCPIRVHWHVKVNYKEYWRVKITVTNFNYRMNYSQWNLVTQHPSFDNLTTIFSFNYKSLNPYGVINDTAMLWGIKYYNDLLMTAGPDGNVQSELLFKKDPKSFTFEKGWAFPRRVYFNGDNCVMPPPDAYPWLPNASTR 423          
BLAST of CX671780 vs. ExPASy Swiss-Prot
Match: COBL1_ARATH (COBRA-like protein 1 OS=Arabidopsis thaliana GN=COBL1 PE=2 SV=1)

HSP 1 Score: 269.626 bits (688), Expect = 1.641e-71
Identity = 115/145 (79.31%), Postives = 128/145 (88.28%), Query Frame = -1
Query:  449 MVQCPSHMCPIRVHWHVKLNYREYWRVKITITNFNYAMNYSLWNLVVQHPNFDNLTQLFSFYYKSLTPYEGLNDTAMLWGIKFYNDFLSEAGSNGNVQSELLFRKDASTFTFEKGWAFPRRIYFNGDNCVMPPPDAYPWLPNASS 883
            +VQC  HMCP+R+HWHVK+NY++YWRVK+TITNFNY MNYS WNLVVQHPNFDNLTQ FSF YK LTPY  +NDT +LWGIKFYND L +AG  GNVQSELLF+K+AS FTFEKGWAFPRRIYFNGDNCVMPPPD+YPWLPN  S
Sbjct:  285 LVQCTKHMCPVRIHWHVKVNYKQYWRVKVTITNFNYNMNYSQWNLVVQHPNFDNLTQTFSFNYKPLTPYASINDTGILWGIKFYNDLLMQAGPFGNVQSELLFQKEASAFTFEKGWAFPRRIYFNGDNCVMPPPDSYPWLPNTGS 429          
BLAST of CX671780 vs. ExPASy Swiss-Prot
Match: COBL2_ARATH (COBRA-like protein 2 OS=Arabidopsis thaliana GN=COBL2 PE=1 SV=2)

HSP 1 Score: 267.314 bits (682), Expect = 8.146e-71
Identity = 117/144 (81.25%), Postives = 128/144 (88.89%), Query Frame = -1
Query:  452 MVQCPSHMCPIRVHWHVKLNYREYWRVKITITNFNYAMNYSLWNLVVQHPNFDNLTQLFSFYYKSLTPYEGLNDTAMLWGIKFYNDFLSEAGSNGNVQSELLFRKDASTFTFEKGWAFPRRIYFNGDNCVMPPPDAYPWLPNAS 883
            ++QC  HMCPIRVHWHVK +Y+EYWRVK+ ITNFNY MNYS WNLVVQHPNFDNLT+LFSF YK L PY  +NDTAMLWGIKFYNDFLS+AG  GNVQSELLF+K+   FTFEKGWAFPRRIYFNGDNCVMPPPD+YPWLPNAS
Sbjct:  276 LLQCTQHMCPIRVHWHVKTSYKEYWRVKVAITNFNYNMNYSQWNLVVQHPNFDNLTKLFSFNYKPLNPYLNINDTAMLWGIKFYNDFLSQAGPVGNVQSELLFQKNPLEFTFEKGWAFPRRIYFNGDNCVMPPPDSYPWLPNAS 419          
BLAST of CX671780 vs. ExPASy Swiss-Prot
Match: COBL3_ORYSJ (COBRA-like protein 3 OS=Oryza sativa subsp. japonica GN=BC1L4 PE=2 SV=1)

HSP 1 Score: 262.692 bits (670), Expect = 2.006e-69
Identity = 114/145 (78.62%), Postives = 126/145 (86.90%), Query Frame = -1
Query:  452 MVQCPSHMCPIRVHWHVKLNYREYWRVKITITNFNYAMNYSLWNLVVQHPNFDNLTQLFSFYYKSLTPY-EGLNDTAMLWGIKFYNDFLSEAGSNGNVQSELLFRKDASTFTFEKGWAFPRRIYFNGDNCVMPPPDAYPWLPNAS 883
            +VQC SHMCPIR+HWHVKLNY+EYWRVKITITNFNY MNY+ WNLV QHPNF+N+TQLFSF YK LTPY   +NDTAM WG+KFYND L +AG  GN QSELL RKD+  FTF+KGWAFP R+YFNGDNCVMPPPDAYPWLPNAS
Sbjct:  288 LVQCTSHMCPIRIHWHVKLNYKEYWRVKITITNFNYRMNYTQWNLVAQHPNFNNITQLFSFNYKPLTPYGSKINDTAMFWGVKFYNDLLMQAGPLGNAQSELLLRKDSKDFTFDKGWAFPHRVYFNGDNCVMPPPDAYPWLPNAS 432          
BLAST of CX671780 vs. ExPASy Swiss-Prot
Match: COBL2_ORYSJ (COBRA-like protein 2 OS=Oryza sativa subsp. japonica GN=BC1L2 PE=2 SV=1)

HSP 1 Score: 256.529 bits (654), Expect = 1.438e-67
Identity = 110/145 (75.86%), Postives = 128/145 (88.28%), Query Frame = -1
Query:  449 MVQCPSHMCPIRVHWHVKLNYREYWRVKITITNFNYAMNYSLWNLVVQHPNFDNLTQLFSFYYKSLTPYEGLNDTAMLWGIKFYNDFLSEAGSNGNVQSELLFRKDASTFTFEKGWAFPRRIYFNGDNCVMPPPDAYPWLPNASS 883
            +VQC  HMCPIRVHWHVKLNYR+YWRVK+TITN+NY MNYS WNLVVQHPNF+N++ +FSF YKSL PY  +NDTAM+WG+K+YND L  AG +GNVQSELLFRKD STFTF+KGWAFPRRIYFNG++CVMP PD YPWLP +S+
Sbjct:  280 LVQCTPHMCPIRVHWHVKLNYRDYWRVKVTITNWNYRMNYSQWNLVVQHPNFENVSTVFSFNYKSLNPYGVINDTAMMWGVKYYNDLLMVAGPDGNVQSELLFRKDRSTFTFDKGWAFPRRIYFNGESCVMPSPDLYPWLPPSST 424          
BLAST of CX671780 vs. ExPASy Swiss-Prot
Match: COBL5_ORYSJ (COBRA-like protein 5 OS=Oryza sativa subsp. japonica GN=BC1 PE=2 SV=1)

HSP 1 Score: 237.654 bits (605), Expect = 6.912e-62
Identity = 100/144 (69.44%), Postives = 120/144 (83.33%), Query Frame = -1
Query:  452 MVQCPSHMCPIRVHWHVKLNYREYWRVKITITNFNYAMNYSLWNLVVQHPNFDNLTQLFSFYYKSLTPYEGLNDTAMLWGIKFYNDFLSEAGSNGNVQSELLFRKDASTFTFEKGWAFPRRIYFNGDNCVMPPPDAYPWLPNAS 883
            ++QC SHMCPIRVHWHVKLNY++YWR KI ITNFNY MNY+ W LV QHPN +N+T++FSF YK L PY  +NDT M +G+KFYND L EAG  GNVQSE+L RKD +TFTF +GWAFPR+IYFNGD C MPPPD+YP+LPN++
Sbjct:  302 LLQCTSHMCPIRVHWHVKLNYKDYWRAKIAITNFNYRMNYTQWTLVAQHPNLNNVTEVFSFQYKPLLPYGNINDTGMFYGLKFYNDLLMEAGPFGNVQSEVLMRKDYNTFTFSQGWAFPRKIYFNGDECKMPPPDSYPYLPNSA 445          
BLAST of CX671780 vs. ExPASy Swiss-Prot
Match: COBL5_ORYSI (COBRA-like protein 5 OS=Oryza sativa subsp. indica GN=BC1 PE=2 SV=1)

HSP 1 Score: 237.654 bits (605), Expect = 6.912e-62
Identity = 100/144 (69.44%), Postives = 120/144 (83.33%), Query Frame = -1
Query:  452 MVQCPSHMCPIRVHWHVKLNYREYWRVKITITNFNYAMNYSLWNLVVQHPNFDNLTQLFSFYYKSLTPYEGLNDTAMLWGIKFYNDFLSEAGSNGNVQSELLFRKDASTFTFEKGWAFPRRIYFNGDNCVMPPPDAYPWLPNAS 883
            ++QC SHMCPIRVHWHVKLNY++YWR KI ITNFNY MNY+ W LV QHPN +N+T++FSF YK L PY  +NDT M +G+KFYND L EAG  GNVQSE+L RKD +TFTF +GWAFPR+IYFNGD C MPPPD+YP+LPN++
Sbjct:  302 LLQCTSHMCPIRVHWHVKLNYKDYWRAKIAITNFNYRMNYTQWTLVAQHPNLNNVTEVFSFQYKPLLPYGNINDTGMFYGLKFYNDLLMEAGPFGNVQSEVLMRKDYNTFTFSQGWAFPRKIYFNGDECKMPPPDSYPYLPNSA 445          
BLAST of CX671780 vs. ExPASy Swiss-Prot
Match: COBL6_ORYSJ (COBRA-like protein 6 OS=Oryza sativa subsp. japonica GN=BC1L7 PE=3 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 1.179e-61
Identity = 99/144 (68.75%), Postives = 121/144 (84.03%), Query Frame = -1
Query:  452 MVQCPSHMCPIRVHWHVKLNYREYWRVKITITNFNYAMNYSLWNLVVQHPNFDNLTQLFSFYYKSLTPYEGLNDTAMLWGIKFYNDFLSEAGSNGNVQSELLFRKDASTFTFEKGWAFPRRIYFNGDNCVMPPPDAYPWLPNAS 883
            ++QC +HMCP+RVHWHVKLNYREYWR KITI NFNY MNY+ W LV QHPN DN+T++FSF YK +  Y  +NDTAM +G+K++ND L EAG +GNVQSE+L RKDA TFTF +GWAFPR++YFNGD C MPPPD+YP+LPNA+
Sbjct:  285 LLQCTTHMCPVRVHWHVKLNYREYWRAKITIVNFNYRMNYTGWTLVAQHPNLDNITEVFSFDYKPVVSYGSINDTAMFYGLKYFNDQLMEAGPHGNVQSEVLMRKDARTFTFRQGWAFPRKVYFNGDECQMPPPDSYPYLPNAA 428          
BLAST of CX671780 vs. ExPASy Swiss-Prot
Match: COBL4_ARATH (COBRA-like protein 4 OS=Arabidopsis thaliana GN=COBL4 PE=2 SV=2)

HSP 1 Score: 233.417 bits (594), Expect = 1.304e-60
Identity = 94/144 (65.28%), Postives = 122/144 (84.72%), Query Frame = -1
Query:  452 MVQCPSHMCPIRVHWHVKLNYREYWRVKITITNFNYAMNYSLWNLVVQHPNFDNLTQLFSFYYKSLTPYEGLNDTAMLWGIKFYNDFLSEAGSNGNVQSELLFRKDASTFTFEKGWAFPRRIYFNGDNCVMPPPDAYPWLPNAS 883
            ++QC  HMCP+RVHWHVK NY++YWRVKI ITNFNY MN++LW L +QHPN +N+TQ+FSF YK ++PY  +NDT M +G KFYND L EAG +GNVQSE+L +KD  TFTF++GWAFPR++YFNGD C++PPPD+YP+LPN++
Sbjct:  268 LLQCTHHMCPVRVHWHVKTNYKDYWRVKIAITNFNYRMNHTLWTLAIQHPNLNNVTQVFSFDYKPVSPYGSINDTGMFYGTKFYNDLLMEAGPSGNVQSEVLLQKDQKTFTFKQGWAFPRKVYFNGDECMLPPPDSYPFLPNSA 411          
The following BLAST results are available for this feature:
BLAST of CX671780 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
COBRA_ARATH3.533e-7483.56Protein COBRA OS=Arabidopsis thaliana GN=COB PE=2 ... [more]
COBL1_ORYSJ1.485e-7280.82COBRA-like protein 1 OS=Oryza sativa subsp. japoni... [more]
COBL1_ARATH1.641e-7179.31COBRA-like protein 1 OS=Arabidopsis thaliana GN=CO... [more]
COBL2_ARATH8.146e-7181.25COBRA-like protein 2 OS=Arabidopsis thaliana GN=CO... [more]
COBL3_ORYSJ2.006e-6978.62COBRA-like protein 3 OS=Oryza sativa subsp. japoni... [more]
COBL2_ORYSJ1.438e-6775.86COBRA-like protein 2 OS=Oryza sativa subsp. japoni... [more]
COBL5_ORYSJ6.912e-6269.44COBRA-like protein 5 OS=Oryza sativa subsp. japoni... [more]
COBL5_ORYSI6.912e-6269.44COBRA-like protein 5 OS=Oryza sativa subsp. indica... [more]
COBL6_ORYSJ1.179e-6168.75COBRA-like protein 6 OS=Oryza sativa subsp. japoni... [more]
COBL4_ARATH1.304e-6065.28COBRA-like protein 4 OS=Arabidopsis thaliana GN=CO... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_13B04_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-13B04-C7-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671780 ID=CX671780; Name=CX671780; organism=Citrus sinensis; type=EST; length=883bp
TTTTTTTTTTTTTTTTTAACAGAACAAGATATCAACTATAATTTCTTCAT
GGAGTTCCTTATTACAAATACTTTTCTTGTGGGATATCCTACAAACAATT
TTTTTATCAAGTGTATGTATAGATAAACATACAACACAACAAATAACTCA
AAAAAATATGGCAAAAACTTCTGATTCCCAATACATAATTAGATGAAAAG
CATGTACAGCAGCAGGCTGTAATGCATCTGAACCCTCTTTATGCTGTGTA
CAAGTTGCAGCACTTGCACATTGAACCCGAGCACCAGGATTACATATGCT
TCAGCACATATCAAACCAGATAGCACGTCAAGAACGTTCTAGAAGTTAGC
CTTTTGGCCTCAGATATAATTCATCACACACAAGCCAATAACAATACCCA
AGATGCCAAGATTATTATGGCTGAACGAAGTAGAGAAATAACAGGCCGGG
AACTTGCGTTTGGCAACCACGGGTAGGCATCTGGAGGTGGCATCACACAG
TTATCTCCATTAAAATAAATCCTTCTAGGGAAAGCCCAACCCTTCTCAAA
AGTAAATGTTGATGCGTCTTTTCGAAACAGCAGCTCTGACTGCACGTTCC
CATTAGAGCCTGCTTCAGAGAGAAAATCATTGTAAAACTTTATTCCCCAC
AGCATGGCTGTATCATTTAAGCCTTCATAAGGAGTTAATGACTTGTAATA
AAAGCTGAAAAGCTGTGTGAGATTATCAAAGTTGGGGTGTTGCACGACTA
GATTCCACAGTGAGTAATTCATTGCGTAATTAAAATTAGTGATTGTGATC
TTCACACGCCAGTACTCCCTATAATTGAGCTTGACATGCCAATGAACTCG
GATGGGACACATATGGCTGGGACACTGGACCAT
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