CX671765

Overview
NameCX671765
Unique NameCX671765
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length767
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX671765_ssr233 microsatellite CX671765_ssr233:233..244. BLAST: Citrus ESTs to Prunus persica proteins V1
CX671765_ssr597 microsatellite CX671765_ssr597:597..617. BLAST: Citrus ESTs to Prunus persica proteins V1
CX671765_ssr681 microsatellite CX671765_ssr681:681..695. BLAST: Citrus ESTs to Prunus persica proteins V1
CX671765_ssr696 microsatellite CX671765_ssr696:696..707. BLAST: Citrus ESTs to Prunus persica proteins V1
CX671765_ssr3 microsatellite CX671765_ssr3:3..30. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig3469 contig Csv1_Contig3469:1..760. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX671765 vs. ExPASy Swiss-Prot
Match: DOF54_ARATH (Dof zinc finger protein DOF5.4 OS=Arabidopsis thaliana GN=DOF5.4 PE=2 SV=2)

HSP 1 Score: 139.043 bits (349), Expect = 2.673e-32
Identity = 63/78 (80.77%), Postives = 66/78 (84.62%), Query Frame = 3
Query:  273 HQN-----HQALKCPRCDSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKTKRSSKPKPNSESSA 491
            HQN     HQ+LKCPRC+SLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRK KRS   +  S SSA
Sbjct:   40 HQNNILNHHQSLKCPRCNSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKAKRSKTKQVPSSSSA 117          
BLAST of CX671765 vs. ExPASy Swiss-Prot
Match: DOF57_ARATH (Dof zinc finger protein DOF5.7 OS=Arabidopsis thaliana GN=DOF5.7 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 6.162e-29
Identity = 56/77 (72.73%), Postives = 64/77 (83.12%), Query Frame = 3
Query:  276 QNHQALKCPRCDSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKTKRSSKPK------PNSESS 488
            Q+ Q LKCPRC+S NTKFCYYNNY+LSQPRHFCK+CRRYWT+GG LRNVP+GGGCRKTK+S KP       P+S SS
Sbjct:   36 QDQQNLKCPRCNSPNTKFCYYNNYSLSQPRHFCKSCRRYWTRGGALRNVPIGGGCRKTKKSIKPNSSMNTLPSSSSS 112          
BLAST of CX671765 vs. ExPASy Swiss-Prot
Match: DOF17_ARATH (Dof zinc finger protein DOF1.7 OS=Arabidopsis thaliana GN=DOF1.7 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.589e-27
Identity = 51/65 (78.46%), Postives = 56/65 (86.15%), Query Frame = 3
Query:  285 QALKCPRCDSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKTKRSSKPKPNS 479
            + LKCPRCDS NTKFCYYNNYNLSQPRHFCKNCRRYWTKGG LRN+PVGGG RK+ + S   P+S
Sbjct:   31 EQLKCPRCDSPNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGALRNIPVGGGTRKSNKRSGSSPSS 95          
BLAST of CX671765 vs. ExPASy Swiss-Prot
Match: DOF22_ARATH (Dof zinc finger protein DOF2.2 OS=Arabidopsis thaliana GN=DOF2.2 PE=2 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 5.767e-27
Identity = 50/68 (73.53%), Postives = 56/68 (82.35%), Query Frame = 3
Query:  288 ALKCPRCDSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKTKRSSKPKPNSESSA 491
            ALKCPRCDS NTKFCY+NNYNL+QPRHFCK CRRYWT+GG LRNVPVGGGCR+ K+       S SS+
Sbjct:   93 ALKCPRCDSANTKFCYFNNYNLTQPRHFCKACRRYWTRGGALRNVPVGGGCRRNKKGKSGNSKSSSSS 160          
BLAST of CX671765 vs. ExPASy Swiss-Prot
Match: DOF53_ARATH (Dof zinc finger protein DOF5.3 OS=Arabidopsis thaliana GN=DOF5.3 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 7.532e-27
Identity = 50/70 (71.43%), Postives = 57/70 (81.43%), Query Frame = 3
Query:  270 PHQNHQALKCPRCDSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKTKRSSKPKPNS 479
            P     AL+CPRCDS NTKFCYYNNY+L+QPR+FCK+CRRYWTKGG LRN+PVGGGCRK KRS+     S
Sbjct:   48 PQPPELALRCPRCDSTNTKFCYYNNYSLTQPRYFCKSCRRYWTKGGTLRNIPVGGGCRKNKRSTSSAARS 117          
BLAST of CX671765 vs. ExPASy Swiss-Prot
Match: DOF11_ARATH (Dof zinc finger protein DOF1.1 OS=Arabidopsis thaliana GN=DOF1.1 PE=1 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 9.837e-27
Identity = 52/84 (61.90%), Postives = 63/84 (75.00%), Query Frame = 3
Query:  291 LKCPRCDSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKTKRSSK--PKPNSESSAXXXXXXXXEAPAAGE 536
            LKCPRCDS NTKFCYYNNYNL+QPRHFCK CRRYWT+GG LRNVPVGGGCR+  +  K     +S SS+        ++P++G+
Sbjct:   77 LKCPRCDSSNTKFCYYNNYNLTQPRHFCKGCRRYWTQGGALRNVPVGGGCRRNNKKGKNGNLKSSSSSSKQSSSVNAQSPSSGQ 160          
BLAST of CX671765 vs. ExPASy Swiss-Prot
Match: DOF56_ARATH (Dof zinc finger protein DOF5.6 OS=Arabidopsis thaliana GN=DOF5.6 PE=2 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 1.641e-26
Identity = 50/74 (67.57%), Postives = 60/74 (81.08%), Query Frame = 3
Query:  270 PHQNHQALKCPRCDSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKTKRSSKPKPNSESSA 491
            PH + Q  KCPRC+S +TKFCYYNNY+LSQPR+FCK CRRYWTKGG LRN+PVGGGCRK K+ S    +S +S+
Sbjct:   68 PHDHPQ--KCPRCESTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKPSSSNSSSSTSS 139          

HSP 2 Score: 21.9422 bits (45), Expect = 1.641e-26
Identity = 10/26 (38.46%), Postives = 15/26 (57.69%), Query Frame = 1
Query:  196 CKTSTQSAEEGYSAAAVVTGGYGLIP 273
            C T  Q++    +AAA++ GG  L P
Sbjct:   42 CSTRPQASAVAVAAAALMDGGRRLRP 67          
BLAST of CX671765 vs. ExPASy Swiss-Prot
Match: DOF31_ARATH (Dof zinc finger protein DOF3.1 OS=Arabidopsis thaliana GN=DOF3.1 PE=2 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 2.192e-26
Identity = 53/69 (76.81%), Postives = 58/69 (84.06%), Query Frame = 3
Query:  285 QALKCPRCDSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRK--TKRSSKPKPNSES 485
            + LKCPRCDS NTKFCYYNNYNLSQPRHFCK+CRRYWTKGG LRNVPVGGG RK  TKRS+    ++ S
Sbjct:   27 EQLKCPRCDSPNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGALRNVPVGGGSRKNATKRSTSSSSSASS 95          
BLAST of CX671765 vs. ExPASy Swiss-Prot
Match: DOF24_ARATH (Dof zinc finger protein DOF2.4 OS=Arabidopsis thaliana GN=DOF2.4 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.882e-26
Identity = 47/67 (70.15%), Postives = 57/67 (85.07%), Query Frame = 3
Query:  288 ALKCPRCDSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKTKRSSKPKPNSESS 488
            ALKCPRC+S NTKFCY+NNY+L+QPRHFCK CRRYWT+GG LRNVPVGGGCR+ +R+     N+ +S
Sbjct:   88 ALKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNRRTKSNSNNNNNS 154          
BLAST of CX671765 vs. ExPASy Swiss-Prot
Match: PBF_MAIZE (Dof zinc finger protein PBF OS=Zea mays GN=PBF PE=1 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 6.376e-26
Identity = 52/76 (68.42%), Postives = 61/76 (80.26%), Query Frame = 3
Query:  264 PHPHQNHQALKCPRCDSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKTKRSSKPKPNSESSA 491
            P P Q  +ALKCPRCDS NTKFCYYNNY++SQPR+FCK CRRYWT GG LRNVP+GGGCRK K +S+    S +S+
Sbjct:   52 PRP-QLPEALKCPRCDSNNTKFCYYNNYSMSQPRYFCKACRRYWTHGGTLRNVPIGGGCRKNKHASRFVLGSHTSS 126          
The following BLAST results are available for this feature:
BLAST of CX671765 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
DOF54_ARATH2.673e-3280.77Dof zinc finger protein DOF5.4 OS=Arabidopsis thal... [more]
DOF57_ARATH6.162e-2972.73Dof zinc finger protein DOF5.7 OS=Arabidopsis thal... [more]
DOF17_ARATH2.589e-2778.46Dof zinc finger protein DOF1.7 OS=Arabidopsis thal... [more]
DOF22_ARATH5.767e-2773.53Dof zinc finger protein DOF2.2 OS=Arabidopsis thal... [more]
DOF53_ARATH7.532e-2771.43Dof zinc finger protein DOF5.3 OS=Arabidopsis thal... [more]
DOF11_ARATH9.837e-2761.90Dof zinc finger protein DOF1.1 OS=Arabidopsis thal... [more]
DOF56_ARATH1.641e-2667.57Dof zinc finger protein DOF5.6 OS=Arabidopsis thal... [more]
DOF31_ARATH2.192e-2676.81Dof zinc finger protein DOF3.1 OS=Arabidopsis thal... [more]
DOF24_ARATH4.882e-2670.15Dof zinc finger protein DOF2.4 OS=Arabidopsis thal... [more]
PBF_MAIZE6.376e-2668.42Dof zinc finger protein PBF OS=Zea mays GN=PBF PE=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_13A08_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-13A08-A15-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671765 ID=CX671765; Name=CX671765; organism=Citrus sinensis; type=EST; length=767bp
GTTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTCCTTCCATGTTTCTGTTT
CTTATCATTTTGTTGAAAATACAACAAATGTGAACGACGGTTTTTTTTTT
CCTTCCCAGTAAATCCTAACAGCTAGATTAATCAAAATCTTTCTGTTTCG
TCTTAATTGCAAAGAAAAACTTATCTAAACAGCACTTGTACGGAATGCAA
GACATCCACTCAATCAGCGGAGGAAGGTTATTCGGCGGCGGCGGTGGTGA
CAGGCGGCTACGGCCTCATCCCCACCAGAACCACCAGGCTCTGAAGTGCC
CGCGTTGTGACTCTCTAAACACAAAATTCTGTTATTACAACAACTACAAT
CTATCCCAGCCCCGCCACTTCTGCAAGAACTGCCGCCGTTACTGGACCAA
AGGCGGCGTCCTGCGTAACGTCCCCGTCGGAGGAGGCTGCCGGAAGACCA
AGCGTAGCTCAAAGCCGAAACCCAACTCAGAATCATCAGCTCAAACGCAA
ACGCAGACACAAACCGAAGCGCCAGCTGCTGGGGAAAGAGATCGTAAGGC
GAACTCTCATTCGAGTAGTGAAAGCTCTAGCACTCTCACCGTCACGAATA
ATAATAATAATAATAATACGAGTGTTGAAACTGTGTCCGTGCATTCTTCG
AGTTCAGTGTCGAATGTGTTGAGTGCCATGAACAACAACAACAACAATAA
TAATAATGATCCTGGTTTTGAGACTGCACCGACTACTGCTTTGCTCGATC
AGGCATCGTCTGATTGC
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