CX671738

Overview
NameCX671738
Unique NameCX671738
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length850
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671738 vs. ExPASy Swiss-Prot
Match: TPIS_PETHY (Triosephosphate isomerase, cytosolic OS=Petunia hybrida GN=TPIP1 PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.664e-33
Identity = 71/80 (88.75%), Postives = 74/80 (92.50%), Query Frame = -2
Query:  232 GKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSATVKKN 471
            GKVA+PAQAQEVHAELRKWL  NVS EVAASTRIIYGGSVNGANCKEL  QPDVDGFLVGGASLKPEFIDIIK+A VK+N
Sbjct:  174 GKVASPAQAQEVHAELRKWLAANVSPEVAASTRIIYGGSVNGANCKELGGQPDVDGFLVGGASLKPEFIDIIKAAEVKRN 253          
BLAST of CX671738 vs. ExPASy Swiss-Prot
Match: TPIS_COPJA (Triosephosphate isomerase, cytosolic OS=Coptis japonica PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 9.133e-32
Identity = 66/80 (82.50%), Postives = 73/80 (91.25%), Query Frame = -2
Query:  232 GKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSATVKKN 471
            GKVA+PAQAQEVH ELRKW+K+NV A+VA S RIIYGGSVNGAN KELA QPD+DGFLVGGASLKPEF+DIIKSATVK +
Sbjct:  174 GKVASPAQAQEVHFELRKWIKENVGADVAGSVRIIYGGSVNGANSKELAGQPDIDGFLVGGASLKPEFVDIIKSATVKSS 253          
BLAST of CX671738 vs. ExPASy Swiss-Prot
Match: TPIS_SECCE (Triosephosphate isomerase, cytosolic OS=Secale cereale PE=2 SV=3)

HSP 1 Score: 135.961 bits (341), Expect = 2.657e-31
Identity = 68/78 (87.18%), Postives = 71/78 (91.03%), Query Frame = -2
Query:  238 GKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSATVK 471
            GKVA+PAQAQEVHA LR WLK NVS EVA STRIIYGGSV GA+CKELAAQPDVDGFLVGGASLKPEFIDII +ATVK
Sbjct:  174 GKVASPAQAQEVHANLRDWLKTNVSPEVAESTRIIYGGSVTGASCKELAAQPDVDGFLVGGASLKPEFIDIINAATVK 251          
BLAST of CX671738 vs. ExPASy Swiss-Prot
Match: TPIS_MAIZE (Triosephosphate isomerase, cytosolic OS=Zea mays PE=3 SV=3)

HSP 1 Score: 135.576 bits (340), Expect = 3.471e-31
Identity = 68/78 (87.18%), Postives = 69/78 (88.46%), Query Frame = -2
Query:  238 GKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSATVK 471
            GKVATPAQAQEVHA LR WLK N S EVA STRIIYGGSV  ANCKELAAQPDVDGFLVGGASLKPEFIDII +ATVK
Sbjct:  174 GKVATPAQAQEVHASLRDWLKTNASPEVAESTRIIYGGSVTAANCKELAAQPDVDGFLVGGASLKPEFIDIINAATVK 251          
BLAST of CX671738 vs. ExPASy Swiss-Prot
Match: TPIS_ARATH (Triosephosphate isomerase, cytosolic OS=Arabidopsis thaliana GN=CTIMC PE=1 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 3.471e-31
Identity = 67/80 (83.75%), Postives = 72/80 (90.00%), Query Frame = -2
Query:  232 GKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSATVKKN 471
            GKVA+PAQAQEVH ELRKWL  NVSA+VAA+TRIIYGGSVNG NCKEL  Q DVDGFLVGGASLKPEFIDIIK+A VKK+
Sbjct:  174 GKVASPAQAQEVHDELRKWLAKNVSADVAATTRIIYGGSVNGGNCKELGGQADVDGFLVGGASLKPEFIDIIKAAEVKKS 253          
BLAST of CX671738 vs. ExPASy Swiss-Prot
Match: TPIS_ORYSJ (Triosephosphate isomerase, cytosolic OS=Oryza sativa subsp. japonica GN=TPI PE=1 SV=3)

HSP 1 Score: 135.191 bits (339), Expect = 4.533e-31
Identity = 69/78 (88.46%), Postives = 70/78 (89.74%), Query Frame = -2
Query:  238 GKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSATVK 471
            GKVATP QAQEVH  LRKWL  NVSAEVA STRIIYGGSV GANCKELAA+PDVDGFLVGGASLKPEFIDII SATVK
Sbjct:  174 GKVATPDQAQEVHDGLRKWLAANVSAEVAESTRIIYGGSVTGANCKELAAKPDVDGFLVGGASLKPEFIDIINSATVK 251          
BLAST of CX671738 vs. ExPASy Swiss-Prot
Match: TPIS_LACSA (Triosephosphate isomerase, cytosolic (Fragment) OS=Lactuca sativa PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 4.533e-31
Identity = 67/80 (83.75%), Postives = 73/80 (91.25%), Query Frame = -2
Query:  232 GKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSATVKKN 471
            GKVA+PAQAQEVHA LRKW  DNVSAEV+ASTRIIYGGSV+G+NCKEL  Q DVDGFLVGGASLKPEFIDIIK+A VKK+
Sbjct:  115 GKVASPAQAQEVHAGLRKWFCDNVSAEVSASTRIIYGGSVSGSNCKELGGQTDVDGFLVGGASLKPEFIDIIKAAEVKKS 194          
BLAST of CX671738 vs. ExPASy Swiss-Prot
Match: TPIS_HORVU (Triosephosphate isomerase, cytosolic OS=Hordeum vulgare PE=1 SV=3)

HSP 1 Score: 132.494 bits (332), Expect = 2.938e-30
Identity = 67/78 (85.90%), Postives = 69/78 (88.46%), Query Frame = -2
Query:  238 GKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSATVK 471
            GKVATPAQAQEVHA LR WLK NVS EVA STRIIYGGSV GA+CKELAAQ DVDGFLVGGASLKPEFIDII +A VK
Sbjct:  174 GKVATPAQAQEVHANLRDWLKTNVSPEVAESTRIIYGGSVTGASCKELAAQADVDGFLVGGASLKPEFIDIINAAAVK 251          
BLAST of CX671738 vs. ExPASy Swiss-Prot
Match: TPIS_MACMU (Triosephosphate isomerase OS=Macaca mulatta GN=TPI1 PE=3 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 6.773e-27
Identity = 59/74 (79.73%), Postives = 63/74 (85.14%), Query Frame = -2
Query:  250 GKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 471
            GK ATP QAQEVH +LR WLK NVS  VA STRIIYGGSV GA CKELA+QPDVDGFLVGGASLKPEF+DII +
Sbjct:  174 GKTATPQQAQEVHEKLRGWLKSNVSEAVAQSTRIIYGGSVTGATCKELASQPDVDGFLVGGASLKPEFVDIINA 247          
BLAST of CX671738 vs. ExPASy Swiss-Prot
Match: TPIS_MACFA (Triosephosphate isomerase OS=Macaca fascicularis GN=TPI1 PE=2 SV=3)

HSP 1 Score: 121.324 bits (303), Expect = 6.773e-27
Identity = 59/74 (79.73%), Postives = 63/74 (85.14%), Query Frame = -2
Query:  250 GKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 471
            GK ATP QAQEVH +LR WLK NVS  VA STRIIYGGSV GA CKELA+QPDVDGFLVGGASLKPEF+DII +
Sbjct:  174 GKTATPQQAQEVHEKLRGWLKSNVSEAVAQSTRIIYGGSVTGATCKELASQPDVDGFLVGGASLKPEFVDIINA 247          
The following BLAST results are available for this feature:
BLAST of CX671738 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 250
Match NameE-valueIdentityDescription
TPIS_PETHY1.664e-3388.75Triosephosphate isomerase, cytosolic OS=Petunia hy... [more]
TPIS_COPJA9.133e-3282.50Triosephosphate isomerase, cytosolic OS=Coptis jap... [more]
TPIS_SECCE2.657e-3187.18Triosephosphate isomerase, cytosolic OS=Secale cer... [more]
TPIS_MAIZE3.471e-3187.18Triosephosphate isomerase, cytosolic OS=Zea mays P... [more]
TPIS_ARATH3.471e-3183.75Triosephosphate isomerase, cytosolic OS=Arabidopsi... [more]
TPIS_ORYSJ4.533e-3188.46Triosephosphate isomerase, cytosolic OS=Oryza sati... [more]
TPIS_LACSA4.533e-3183.75Triosephosphate isomerase, cytosolic (Fragment) OS... [more]
TPIS_HORVU2.938e-3085.90Triosephosphate isomerase, cytosolic OS=Hordeum vu... [more]
TPIS_MACMU6.773e-2779.73Triosephosphate isomerase OS=Macaca mulatta GN=TPI... [more]
TPIS_MACFA6.773e-2779.73Triosephosphate isomerase OS=Macaca fascicularis G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_12H03_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-12H03-P6-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671738 ID=CX671738; Name=CX671738; organism=Citrus sinensis; type=EST; length=850bp
TTTTTTTGCAAGAAGGGAAAAGCAACCATTTATTAAATCCACAATGATAA
GTTTCAAATCCCCACTGAAATAGGAAAGAGATTCTTAAGAATTCTGAAGA
TTTAACTTATTATACTGGAAAGGCGTTGGTAACACTTAACAGACCACAAA
AATTACAACGCTAGTTTCCAGAACGCATAACAGAGAAAACTGCAGGCATC
AGCAAGCCGAGTAGCTTGGTCTTTAACTTCAATTCTTCTTCACTGTGGCA
GACTTGATAATATCGATGAACTCCGGCTTTAGAGAAGCTCCACCAACCAA
AAATCCATCCACATCAGGTTGTGCTGCCAATTCTTTGCAATTTGCTCCAT
TTACAGAACCTCCGTAGATGATTCTAGTTGATGCTGCAACTTCAGCACTG
ACATTGTCTTTAAGCCATTTCCTCAGTTCAGCATGGACTTCCTGAGCCTG
AGCAGGGGTTGCAACCTTCCCGTTTTTTTTAAAGTGAACAACTATTGCTA
TAACATAAACACATGGATAAACTCACGTACATGCCAAAAACAGTTTGTTC
TGTGTATATTTGTACATATCGAATCCTTGCAAAATGCTGTCTGCATAGGA
ACAGGCAGAATCATCGATGCCGGGGAAATAAAAGAGCGAGTATAATTTCA
TTGTTGATTGCATGCAACAAAAACTACAAAATTGACCTGCAAATGCTTTC
GATCATGAATCTTAATTTTTCCCTCTTTCCCTTTTTCTTTCCACAAGAAT
CCAGATGATACTAAAGCTAACTATTTTAAGGTATTTATTGACTTATAGAT
TCCTATGAAGTGGGGAAATGTCTCTCAAACCTTGAGTCGAAACTGGTTGC
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