CX671729

Overview
NameCX671729
Unique NameCX671729
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length762
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX671729_ssr491 microsatellite CX671729_ssr491:491..502. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX671729 vs. ExPASy Swiss-Prot
Match: RAP23_ARATH (Ethylene-responsive transcription factor RAP2-3 OS=Arabidopsis thaliana GN=RAP2-3 PE=1 SV=2)

HSP 1 Score: 130.954 bits (328), Expect = 7.227e-30
Identity = 84/191 (43.98%), Postives = 101/191 (52.88%), Query Frame = -1
Query:  190 EKKTQRVRKNVYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXAKRIRGDKAKLNF--------------XXXXXXXXXXXAKKRCMPS---PELTQPRFETIGTPPAPAPSPWVGFGYQNEFYQ-PRAVDDEFELSQQISRLESFLGLEPLMSQPSGNVAGGCDSVDFWMLDDVAATQQ 708
            E   +R RKNVYRGIR+RPWGKWAAEIRDP KGVRVWLGTFNT           AK+IRGDKAKLNF                         AKK C+ S    EL+QP F          P   +GFG  +EF       + +++L QQIS LESFL L+   ++    +      VD WMLDDV A+ +
Sbjct:   68 EPGKRRKRKNVYRGIRKRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAAMAYDVAAKQIRGDKAKLNFPDLHHPPPPNYTPPPSSPRSTDQPPAKKVCVVSQSESELSQPSF----------PVECIGFGNGDEFQNLSYGFEPDYDLKQQISSLESFLELDGNTAEQPSQLDESVSEVDMWMLDDVIASYE 248          
BLAST of CX671729 vs. ExPASy Swiss-Prot
Match: ERF1_ORYSJ (Ethylene-responsive transcription factor 1 OS=Oryza sativa subsp. japonica GN=EREBP1 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.848e-18
Identity = 44/66 (66.67%), Postives = 49/66 (74.24%), Query Frame = -1
Query:  508 KKTQRVRKNVYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXAKRIRGDKAKLNF 705
            K  +R RKN +RGIRQRPWGKWAAEIRDP KGVRVWLGTFN+           A+RIRG KAK+NF
Sbjct:  110 KSAKRKRKNQFRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNSAEEAARAYDAEARRIRGKKAKVNF 175          
BLAST of CX671729 vs. ExPASy Swiss-Prot
Match: RAP22_ARATH (Ethylene-responsive transcription factor RAP2-2 OS=Arabidopsis thaliana GN=RAP2-2 PE=2 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 3.720e-18
Identity = 45/70 (64.29%), Postives = 50/70 (71.43%), Query Frame = -1
Query:  508 EWKEKKTQRVRKNVYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXAKRIRGDKAKLNF 717
            E  EK ++R RKN YRGIRQRPWGKWAAEIRDP KG R WLGTF+T           A+RIRG KAK+NF
Sbjct:  114 EQAEKSSKRKRKNQYRGIRQRPWGKWAAEIRDPRKGSREWLGTFDTAEEAARAYDAAARRIRGTKAKVNF 183          
BLAST of CX671729 vs. ExPASy Swiss-Prot
Match: ERF71_ARATH (Ethylene-responsive transcription factor ERF071 OS=Arabidopsis thaliana GN=ERF071 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.720e-18
Identity = 45/68 (66.18%), Postives = 50/68 (73.53%), Query Frame = -1
Query:  508 KEKKTQRVRKNVYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXAKRIRGDKAKLNF 711
            +E+  +R RKN+YRGIRQRPWGKWAAEIRDP KGVRVWLGTF T           A +IRG KAKLNF
Sbjct:   38 EERDGKRERKNLYRGIRQRPWGKWAAEIRDPSKGVRVWLGTFKTADEAARAYDVAAIKIRGRKAKLNF 105          
BLAST of CX671729 vs. ExPASy Swiss-Prot
Match: RA212_ARATH (Ethylene-responsive transcription factor RAP2-12 OS=Arabidopsis thaliana GN=RAP2-12 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.859e-18
Identity = 43/67 (64.18%), Postives = 47/67 (70.15%), Query Frame = -1
Query:  508 EKKTQRVRKNVYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXAKRIRGDKAKLNF 708
            EK   R RKN YRGIRQRPWGKWAAEIRDP +G R+WLGTF T           A+RIRG KAK+NF
Sbjct:  114 EKSANRKRKNQYRGIRQRPWGKWAAEIRDPREGARIWLGTFKTAEEAARAYDAAARRIRGSKAKVNF 180          
BLAST of CX671729 vs. ExPASy Swiss-Prot
Match: ERF73_ARATH (Ethylene-responsive transcription factor ERF073 OS=Arabidopsis thaliana GN=ERF073 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.041e-16
Identity = 43/71 (60.56%), Postives = 51/71 (71.83%), Query Frame = -1
Query:  508 TEWKEKKTQRVRKNVYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXAKRIRGDKAKLNF 720
            ++ K+K++ R     Y+GIR+RPWG+WAAEIRDP KGVRVWLGTFNT           AKRIRG KAKLNF
Sbjct:   15 SDGKKKQSSR-----YKGIRRRPWGRWAAEIRDPIKGVRVWLGTFNTAEEAARAYDLEAKRIRGAKAKLNF 80          
BLAST of CX671729 vs. ExPASy Swiss-Prot
Match: EF110_ARATH (Ethylene-responsive transcription factor ERF110 OS=Arabidopsis thaliana GN=ERF110 PE=2 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 2.041e-16
Identity = 44/80 (55.00%), Postives = 53/80 (66.25%), Query Frame = -1
Query:  508 EDSSNKAARTEWKEKKTQRVRKNVYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXAKRIRGDKAKLNF 747
            E+S +KA   E +EKK +      YRG+RQRPWGKWAAEIRDP++  RVWLGTF+T           A R RG+KAKLNF
Sbjct:   59 EESMSKAFPEEAREKKRR------YRGVRQRPWGKWAAEIRDPHRAARVWLGTFDTAEAAARAYDEAALRFRGNKAKLNF 132          
BLAST of CX671729 vs. ExPASy Swiss-Prot
Match: EF112_ARATH (Ethylene-responsive transcription factor ERF112 OS=Arabidopsis thaliana GN=ERF112 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.482e-16
Identity = 57/136 (41.91%), Postives = 67/136 (49.26%), Query Frame = -1
Query:  310 KEKKTQRVRKNVYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXAKRIRGDKAKLNFXXXXXXXXXXXAKKRCMPSPELTQPRFETIGTPPAPAP--SPWVGFGYQNEFYQPRAVDDEFELSQQI 711
            +EK   R R   YRG+RQRPWGKWAAEIRDP K  RVWLGTF+T           A   RG KAKLNF              +  PSP  +  R   I TPP+P P  +P +       F Q R+ D    LS  +
Sbjct:   60 QEKSNSRQRN--YRGVRQRPWGKWAAEIRDPNKAARVWLGTFDTAEEAALAYDKAAFEFRGHKAKLNF-----PEHIRVNPTQLYPSPATSHDRI--IVTPPSPPPPIAPDILLDQYGHF-QSRSSDSSANLSMNM 185          
BLAST of CX671729 vs. ExPASy Swiss-Prot
Match: RAP26_ARATH (Ethylene-responsive transcription factor RAP2-6 OS=Arabidopsis thaliana GN=RAP2-6 PE=2 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 5.028e-15
Identity = 41/74 (55.41%), Postives = 45/74 (60.81%), Query Frame = -1
Query:  508 AARTEWKEKKTQRVRKNVYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXAKRIRGDKAKLNF 729
            +A T+  E      R   YRG+RQRPWGKWAAEIRDP+K  RVWLGTF T           A R RG KAKLNF
Sbjct:   43 SAVTKECESSMSLERPKKYRGVRQRPWGKWAAEIRDPHKATRVWLGTFETAEAAARAYDAAALRFRGSKAKLNF 116          
BLAST of CX671729 vs. ExPASy Swiss-Prot
Match: EF115_ARATH (Ethylene-responsive transcription factor ERF115 OS=Arabidopsis thaliana GN=ERF115 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.911e-14
Identity = 37/61 (60.66%), Postives = 41/61 (67.21%), Query Frame = -1
Query:  508 VRKNVYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXAKRIRGDKAKLNF 690
            +RK  YRG+RQRPWGKWAAEIRDP K  RVWLGTF T           A + +G KAKLNF
Sbjct:   87 LRKRHYRGVRQRPWGKWAAEIRDPQKAARVWLGTFETAEAAALAYDNAALKFKGSKAKLNF 147          
The following BLAST results are available for this feature:
BLAST of CX671729 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
RAP23_ARATH7.227e-3043.98Ethylene-responsive transcription factor RAP2-3 OS... [more]
ERF1_ORYSJ2.848e-1866.67Ethylene-responsive transcription factor 1 OS=Oryz... [more]
RAP22_ARATH3.720e-1864.29Ethylene-responsive transcription factor RAP2-2 OS... [more]
ERF71_ARATH3.720e-1866.18Ethylene-responsive transcription factor ERF071 OS... [more]
RA212_ARATH4.859e-1864.18Ethylene-responsive transcription factor RAP2-12 O... [more]
ERF73_ARATH2.041e-1660.56Ethylene-responsive transcription factor ERF073 OS... [more]
EF110_ARATH2.041e-1655.00Ethylene-responsive transcription factor ERF110 OS... [more]
EF112_ARATH3.482e-1641.91Ethylene-responsive transcription factor ERF112 OS... [more]
RAP26_ARATH5.028e-1555.41Ethylene-responsive transcription factor RAP2-6 OS... [more]
EF115_ARATH1.911e-1460.66Ethylene-responsive transcription factor ERF115 OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_12G10_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-12G10-N20-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671729 ID=CX671729; Name=CX671729; organism=Citrus sinensis; type=EST; length=762bp
GTCATTAGCAACATAAAACACAAATTAAAATAAACAAAGTCATTAACAAC
ATAAAACACAAAATCAAAACTACATAAACAGCATTAAACACAATAACTCA
AAACACAGACCCACACGAACACACAGCACGGCCACAACTCAATTCGTTTA
TTATTATTTTTCCTAACACAAGAACTGATTGCTGTTCAGCTGCTGAGTCG
CCGCCACGTCATCAAGCATCCAAAAGTCCACCGAGTCACACCCACCAGCA
ACGTTTCCACTCGGCTGACTCATTAATGGCTCCAATCCCAAAAACGATTC
CAAGCGCGAAATTTGCTGGCTCAGCTCAAACTCGTCGTCTACTGCCCTGG
GTTGATAAAACTCATTCTGATACCCAAACCCCACCCACGGGGACGGCGCC
GGAGCCGGTGGGGTTCCGATGGTTTCAAATCTCGGCTGAGTCAACTCAGG
GGATGGCATGCAGCGTTTCTTAGCCGGGGGTGGAGCTATTGGCGGCGGCG
GCTGAGCGAAGTTGAGCTTGGCCTTGTCGCCGCGGATACGCTTGGCGGCT
TCATCATAAGCTCTTGCGGCTTCTTCGGCTGTGTTGAAAGTGCCGAGCCA
AACGCGGACGCCCTTGTAAGGGTCTCTAATTTCAGCTGCCCATTTTCCCC
ACGGCCTCTGCCGTATTCCTCTGTACACGTTCTTGCGAACTCGCTGAGTC
TTCTTCTCCTTCCACTCAGTACGAGCAGCTTTATTGCTTGAATCTTCAGC
CTTCTCATTTTT
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