CX671728

Overview
NameCX671728
Unique NameCX671728
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length886
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX671728 vs. ExPASy Swiss-Prot
Match: Y2433_ARATH (Uncharacterized protein At2g24330 OS=Arabidopsis thaliana GN=At2g24330 PE=2 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 1.307e-52
Identity = 116/210 (55.24%), Postives = 134/210 (63.81%), Query Frame = -3 
Query:  258 RYDPDPXXXXXXXXXXXXXXXADSGLKVYVGDESKLNFPVGKSNDVEFVPSSGLRNRKQLHTRSSSAGSTPVHHSDEGTAPHSVRSEDAQTSEHNQ-LVVNHHNPQGSNTHDGGWISRIAALLVGEDPTQSYALICGNCHMHNGLARKEDFAYITYYCPHCHALNRPKELEEHVSGSVSDSPNMSSLTTDFMNNAGSPLSESVRPSNSPV 884
            RYDPDP               A+SGLKV+VGDES+L    GK+N      S GLRNRKQ +TR +SA +TP+HHSD   + HS  SE    +E NQ +V  H+NPQ    HDG WISRIAALLVGEDP+QSYALICGNC MHNGLARKEDF YITYYCPHC ALN+PK  EEH   + +D+    SL         S  S S R  NSP+
Sbjct:  182 RYDPDPAAKAAAATVLASKLGAESGLKVFVGDESQLEPTAGKNNAKH---SGGLRNRKQTNTRGNSAETTPIHHSDN-ESNHSGTSERITGTEQNQQMVFEHYNPQEYAAHDGSWISRIAALLVGEDPSQSYALICGNCRMHNGLARKEDFPYITYYCPHCRALNKPKHSEEHSLIAPADTLPKVSLKPMESEVINSSSSTSER-GNSPI 386
[Close]
BLAST of CX671728 vs. ExPASy Swiss-Prot
Match: LNPA_DANRE (Protein lunapark-A OS=Danio rerio GN=lnpa PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.493e-11
Identity = 38/117 (32.48%), Postives = 56/117 (47.86%), Query Frame = -3 
Query:  222 GWISRIAALLVGEDPTQSYALICGNCHMHNGLARKEDFAYITYYCPHCHALN--------RPKELEEHVSGSVSDSPNMSSLTTDFMNNAGSPLSESVRPSNSPVTEGSGSEEAEKV 548
            G + R+   LVG+ P   YALIC  C  HNG+A KE+F YI + C +C+ LN         P+  E       S  P   ++ TD   +  +P S+   P   PV  G G  + +++
Sbjct:  247 GAVDRVIEYLVGDGPQNRYALICQQCLSHNGMALKEEFEYIAFRCAYCYFLNPARKTRPQAPRLPEFAAEAKTSQDPPAVAMETDLPVSPPAPESKEAGP--EPVKAGDGDPQTDEI 361
The following BLAST results are available for this feature:
BLAST of CX671728 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
Y2433_ARATH1.307e-5255.24Uncharacterized protein At2g24330 OS=Arabidopsis t... [more]
LNPA_DANRE2.493e-1132.48Protein lunapark-A OS=Danio rerio GN=lnpa PE=2 SV=... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS10_12G10_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-12G10-N20-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671728 ID=CX671728; Name=CX671728; organism=Citrus sinensis; type=EST; length=886bp
TTTTTGATTGAAGGGAAAAAATATAGGTAGTCTCCGATGAGGTTATCCAA
AGATTCTATTAACAAAAAACAAAAAAACAAAAAAAAATCCGTATGAAATG
TCAATAGTTCCTTGCTTTTGAGCAAAACAAGAAGCAAACTGACAACACAT
CCATGCAGAAGAAAATCAAGTATCATCTCCAAACTAGTATCTATCTTACA
ACTAAACATATTAAATTAATCAACTTTTTCAGCTTCCTCGCTTCCCGACC
CTTCTGTTACAGGGCTATTACTTGGGCGTACACTTTCACTCAAAGGACTG
CCGGCATTGTTCATAAAATCAGTTGTTAAGGAGCTCATATTAGGGGAATC
AGAAACAGAACCAGAAACATGCTCTTCCAATTCTTTTGGCCGATTCAGGG
CATGGCAGTGTGGACAGTAATAAGTAATATATGCAAAATCCTCCTTCCTA
GCGAGTCCATTATGCATATGGCAGTTGCCACATATAAGAGCATAAGATTG
CGTAGGATCTTCACCCACAAGTAGGGCTGCAATTCTAGAAATCCATCCTC
CGTCGTGCGTGTTAGATCCCTGAGGATTGTGATGATTGACAACCAGTTGA
TTATGCTCAGAAGTTTGAGCATCCTCACTCCTGACTGAATGGGGAGCAGT
TCCCTCATCAGAATGATGCACTGGAGTGCTTCCTGCACTACTGGATCTGG
TATGCAATTGTTTTCGATTTCGAAGGCCGCTTGATGGCACAAATTCGACA
TCATTGCTTTTCCCAACTGGGAAATTGAGCTTGGATTCATCTCCCACATA
AACTTTCAAGCCAGAATCAGCACCAAGCTTGGATGCTAGTACAGTTGCAG
CAGCAGCTTTTGCCGCTGGGTCAGGATCATACCTCT
back to top