CX671726

Overview
NameCX671726
Unique NameCX671726
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length869
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10848 contig Csv1_Contig10848:263..1131. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX671726 vs. ExPASy Swiss-Prot
Match: RTNLH_ARATH (Reticulon-like protein B8 OS=Arabidopsis thaliana GN=RTNLB8 PE=1 SV=1)

HSP 1 Score: 266.544 bits (680), Expect = 1.350e-70
Identity = 131/207 (63.29%), Postives = 154/207 (74.40%), Query Frame = -1
Query:  234 SFFEKETSSSVTARFNRLFGRQKPVHHLLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLFNRSASKVPRFVLPPEVFANIGTTVCANVNEALGLLQDIACGGKLKQXXXXXXXXXXXXVIGSWCNLLTVLYIGFVAAHTLPVLYEKHEDKVDSXXXXXXXXXXXQYKKLDSGFLS 854
            SFFE+E   SV++RFNRLF RQKP+HH+LGGGKSADVLLWRNKKISASVLMGATAIWVLFEW+N+HFL++VC+AL+LGM+AQF W N SG  NRS S+VPR VLP + FA +G  V   VN  L  LQD+AC G LKQ            ++GS CN LTVLYIGFV AHT+PVLYE++ED+VD             YKKLD+GFLS
Sbjct:   30 SFFEQE--DSVSSRFNRLFDRQKPIHHVLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWINFHFLSLVCYALLLGMIAQFVWSNASGFLNRSQSRVPRLVLPKDFFAEVGVAVGKEVNRGLLFLQDLACKGNLKQFLMAVIGLWVAAMVGSCCNFLTVLYIGFVGAHTMPVLYERYEDEVDGFMDSMIMKFHSHYKKLDTGFLS 234          
BLAST of CX671726 vs. ExPASy Swiss-Prot
Match: RTNLE_ARATH (Reticulon-like protein B5 OS=Arabidopsis thaliana GN=RTNLB5 PE=1 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 1.317e-41
Identity = 90/208 (43.27%), Postives = 126/208 (60.58%), Query Frame = -1
Query:  234 SFFEKETS-SSVTARFNRLFGRQKPVHHLLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLFNRSASKVPRFVLPPEVFANIGTTVCANVNEALGLLQDIACGGKLKQXXXXXXXXXXXXVIGSWCNLLTVLYIGFVAAHTLPVLYEKHEDKVDSXXXXXXXXXXXQYKKLDSGFLS 854
            S +EK  S S+V A+  R+FGR+KPVH +LGGGK ADV LWR+KK+S +VL  ATAIWVLFE + YH L+++C   +L +   F W N   L N+++ ++P   +P E F  + +++   +N+A  +L+ IA G  LK+            V+G+W N LT++YI FV  HT+P+LYEKHEDKVD            QY   D   LS
Sbjct:   34 SEYEKPDSPSAVKAKIYRMFGREKPVHKVLGGGKPADVFLWRDKKLSGAVLGVATAIWVLFELVEYHLLSLLCHISILALGGLFLWSNAHTLINKTSPQIPEIHVPEEAFLVVASSLRNELNQAFVILRSIALGRDLKKFLMVVVGLWIISVVGNWFNFLTLVYICFVILHTVPMLYEKHEDKVDPLAEKAMKELQKQYVVFDEKVLS 241          
BLAST of CX671726 vs. ExPASy Swiss-Prot
Match: RTNLF_ARATH (Reticulon-like protein B6 OS=Arabidopsis thaliana GN=RTNLB6 PE=1 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 5.005e-41
Identity = 89/202 (44.06%), Postives = 119/202 (58.91%), Query Frame = -1
Query:  234 ETSSSVTARFNRLFGRQKPVHHLLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLFNRSASKVPRFVLPPEVFANIGTTVCANVNEALGLLQDIACGGKLKQXXXXXXXXXXXXVIGSWCNLLTVLYIGFVAAHTLPVLYEKHEDKVDSXXXXXXXXXXXQYKKLDSGFLS 839
            E+ S++ A+  RLFGR+KPVH +LGGG  ADV LWR+KK+SASVL  ATAIWVLFE + YHFL++VC  L+  + A F   N     N++  K+P   +  E F  I + +   +N+A  +L+ IA G  LK+            V+G+W N LT++YI FV  HT+P+LYEKHEDKVD             Y   D   LS
Sbjct:   40 ESPSALKAKIYRLFGREKPVHKVLGGGLPADVFLWRDKKLSASVLGVATAIWVLFELVEYHFLSLVCHILIFALAALFLLSNAHAFMNKTPPKIPEIHIKEEHFLMIVSALRNELNQAFVILRSIALGRDLKKFLMVVFGLWIISVVGNWFNFLTLVYICFVVLHTVPMLYEKHEDKVDPVAEKTLKELKKHYMVFDEKVLS 241          
BLAST of CX671726 vs. ExPASy Swiss-Prot
Match: RTNLA_ARATH (Reticulon-like protein B1 OS=Arabidopsis thaliana GN=RTNLB1 PE=1 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 4.848e-36
Identity = 76/200 (38.00%), Postives = 112/200 (56.00%), Query Frame = -1
Query:  234 SSSVTARFNRLFGRQKPVHHLLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLFNRSASKVPRFVLPPEVFANIGTTVCANVNEALGLLQDIACGGKLKQXXXXXXXXXXXXVIGSWCNLLTVLYIGFVAAHTLPVLYEKHEDKVDSXXXXXXXXXXXQYKKLDSGFLS 833
            SSS+ ++  RLFGR++PVH +LGGGK AD+ +W+NKK+S  VL GATA WV+FE + YH LT++C  +++ +   F W N +   N+S  K+P   +P E    + + +   +N     L++IA G  LK+            ++G   N LT+ YI  V   T+P+ Y+K+EDKVD            QY  LD   LS
Sbjct:   63 SSSMKSKVYRLFGREQPVHKVLGGGKPADIFMWKNKKMSGGVLGGATAAWVVFELMEYHLLTLLCHVMIVVLAVLFLWSNATMFINKSPPKIPEVHIPEEPILQLASGLRIEINRGFSSLREIASGRDLKKFLIAIAGLWVLSILGGCFNFLTLAYIALVLLFTVPLAYDKYEDKVDPLGEKAMIELKKQYAVLDEKVLS 262          
BLAST of CX671726 vs. ExPASy Swiss-Prot
Match: RTNLC_ARATH (Reticulon-like protein B3 OS=Arabidopsis thaliana GN=RTNLB3 PE=1 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 2.406e-35
Identity = 77/204 (37.75%), Postives = 111/204 (54.41%), Query Frame = -1
Query:  234 EKETSSSVTARFNRLFGRQKPVHHLLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLFNRSASKVPRFVLPPEVFANIGTTVCANVNEALGLLQDIACGGKLKQXXXXXXXXXXXXVIGSWCNLLTVLYIGFVAAHTLPVLYEKHEDKVDSXXXXXXXXXXXQYKKLDSGFLS 845
            + + S+S+  +  RLFGR++P+H L GGGK AD+ LWRNKK+S  VL  AT  W+LFE L Y+ LT+     +L +   F W + S   ++S   +P   +P +V   + + +   +N    +L+DIA G  LK+             +GS CN LT++YI  V   T+PVLYEK+EDKVD            QY + D   LS
Sbjct:   34 DDKNSASLKTKIYRLFGREQPLHKLFGGGKPADIFLWRNKKVSGGVLGAATVSWILFELLEYNLLTLFGHISILALAVLFLWSSASTFIHKSPLHIPEVHIPEDVVLQLASGLRIEINRGFTVLRDIASGRDLKKFLLVIAGLWVLSKVGSSCNFLTLIYIATVLLFTIPVLYEKYEDKVDDFGEKAMREIKKQYVEFDVKVLS 237          
BLAST of CX671726 vs. ExPASy Swiss-Prot
Match: RTNLD_ARATH (Reticulon-like protein B4 OS=Arabidopsis thaliana GN=RTNLB4 PE=1 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 4.104e-35
Identity = 79/200 (39.50%), Postives = 107/200 (53.50%), Query Frame = -1
Query:  237 TSSSVTARFNRLFGRQKPVHHLLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLFNRSASKVPRFVLPPEVFANIGTTVCANVNEALGLLQDIACGGKLKQXXXXXXXXXXXXVIGSWCNLLTVLYIGFVAAHTLPVLYEKHEDKVDSXXXXXXXXXXXQYKKLDSGFL 836
            +SSS  ++  RLFGR+KPVH +LGGGK AD+ LWRNKK+S  VL   TA WVLFE   YH L  +C   +  + A F W N     ++S   +P   +P +    + + +   +N  L LL++IA G  +K+            +IGS  N LT+ Y   V   T+PVLYEK+EDKVD+           QY  LD   L
Sbjct:   41 SSSSFKSKIYRLFGREKPVHKVLGGGKPADIFLWRNKKVSGGVLGAVTASWVLFELFEYHLLAFLCHFAIFALAALFLWSNACTFIHKSTPHIPEVHIPEDPILQLVSGLRIEINRGLTLLRNIASGKDVKKFILVIAGLWVLSIIGSCYNFLTLFYTATVLLFTIPVLYEKYEDKVDAYGEKAMREIKKQYAVLDEKVL 240          
BLAST of CX671726 vs. ExPASy Swiss-Prot
Match: RTNLB_ARATH (Reticulon-like protein B2 OS=Arabidopsis thaliana GN=RTNLB2 PE=1 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 3.474e-34
Identity = 73/208 (35.10%), Postives = 116/208 (55.77%), Query Frame = -1
Query:  234 EKETSSS----VTARFNRLFGRQKPVHHLLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLFNRSASKVPRFVLPPEVFANIGTTVCANVNEALGLLQDIACGGKLKQXXXXXXXXXXXXVIGSWCNLLTVLYIGFVAAHTLPVLYEKHEDKVDSXXXXXXXXXXXQYKKLDSGFLS 845
            EK++SSS    + ++  RLFGR++PVH +LGGGK AD+ +W++KK+S  V  GAT  WVLFE + YH LT++C  +++ +   F W N +   ++S  K+P   +P E    + + +   +N  +  L++IA G  +K+            ++G   + LT+ YI  V   T+P+ Y+K+EDKVDS           QY  LD+   S
Sbjct:   51 EKKSSSSSPKSLKSKVYRLFGRERPVHKVLGGGKPADIFMWKDKKMSGGVFGGATVAWVLFELMEYHLLTLLCHVMIVALAVLFLWSNATMFIHKSPPKIPEVHIPEEPLLQLASGLRIEINRGISSLREIASGRDIKKFLSAIAGLWVLSILGGCYSFLTLAYIALVLLFTVPLFYDKYEDKVDSYGEKAMAELKKQYAVLDAKVFS 258          
BLAST of CX671726 vs. ExPASy Swiss-Prot
Match: RTNLI_ARATH (Reticulon-like protein B9 OS=Arabidopsis thaliana GN=RTNLB9 PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.753e-31
Identity = 68/191 (35.60%), Postives = 103/191 (53.93%), Query Frame = -1
Query:  234 RLFGRQKPVHHLLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLFNRSASKVPRFVLPPEVFANIGTTVCANVNEALGLLQDIACGGKLKQXXXXXXXXXXXXVIGSWCNLLTVLYIGFVAAHTLPVLYEKHEDKVDSXXXXXXXXXXXQYKKLDSGFLS 806
            +LF RQ+ +H + GGGK AD+LLWR  KI+A++++G + +W L E + Y+F+T++C A +  ML  F W   S   N     +P  VL    F  +  +     N+ L  L D+ACG                 +IG++ N + +L+IGFV+  TLPV+YE +ED VD+            YKK+D+  LS
Sbjct:   22 KLFTRQRSIHSIFGGGKVADILLWREPKIAATLVIGVSILWFLMEVVEYNFITLICHASMTSMLFFFIWSTASDFLNWERPLIPEVVLDESSFKQLARSFHVRFNQILTKLLDVACGRDPPLFFLTTISLYIVSIIGTYFNFVNLLFIGFVSMQTLPVMYEMYEDDVDTAAGKLMRKMKKLYKKVDTNVLS 212          
BLAST of CX671726 vs. ExPASy Swiss-Prot
Match: RTNLG_ARATH (Reticulon-like protein B7 OS=Arabidopsis thaliana GN=RTNLB7 PE=2 SV=2)

HSP 1 Score: 127.872 bits (320), Expect = 7.496e-29
Identity = 68/197 (34.52%), Postives = 104/197 (52.79%), Query Frame = -1
Query:  234 VTARFNRLFGRQKPVHHLLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLFNRSASKVPRFVLPPEVFANIGTTVCANVNEALGLLQDIACGGKLKQXXXXXXXXXXXXVIGSWCNLLTVLYIGFVAAHTLPVLYEKHEDKVDSXXXXXXXXXXXQYKKLDSGFLS 824
            + A   R+FGR++P+H +LGGGK ADVLLWR+KK++  +L   T IW+LF +     LT +C   +L +L  F W   S   N+S   +    +P +      + +   +N A   L+ IA    +K             VIG+W + L++LYI FV  HT+P+LYEK+ED++D             Y+  ++ FLS
Sbjct:   47 INAPIYRMFGRERPIHMVLGGGKPADVLLWRDKKVTLGLLSAVTVIWLLFGFGGRRLLTSLCRGSILFLLLSFLW---SNALNKSPENMMDIYIPEKPLLQAASAMTFELNCAFATLRSIALERDIKNFVMAVIGLWLVSVIGNWFSFLSLLYICFVLIHTVPMLYEKYEDEIDPIAEKAVIEMKKHYQVFEAKFLS 240          
BLAST of CX671726 vs. ExPASy Swiss-Prot
Match: RTNLP_ARATH (Reticulon-like protein B16 OS=Arabidopsis thaliana GN=RTNLB16 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.911e-24
Identity = 59/191 (30.89%), Postives = 95/191 (49.74%), Query Frame = -1
Query:  234 RLFGRQKPVHHLLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLFNRSASKVPRFVLPPEVFANIGTTVCANVNEALGLLQDIACGGKLKQXXXXXXXXXXXXVIGSWCNLLTVLYIGFVAAHTLPVLYEKHEDKVDSXXXXXXXXXXXQYKKLDSGFLS 806
            RL GRQ  VH  +GGGK+AD+LLWR + +S  V++ +T  W++FE+    FL++    L++ ++  F    +S   NR    +P  VL  E+  +   +    +N  L +  D+  G   +              IGS+ +L T+LYIG + + T+P LY K++ KVD             YK +D   +S
Sbjct:   24 RLLGRQITVHQFMGGGKAADLLLWRRRHLSLGVIIISTVAWLIFEFSGLPFLSVSSDVLLIVIMISFVHARVSAFRNRQLHSLPELVLSEEMVNSAAASFRIKLNHLLVMAHDVTVGNDFRLFFKVVICLWLLSAIGSYISLCTLLYIGTILSVTIPALYSKYQSKVDKCCGTIHRRLSHHYKIVDENVIS 214          
The following BLAST results are available for this feature:
BLAST of CX671726 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
RTNLH_ARATH1.350e-7063.29Reticulon-like protein B8 OS=Arabidopsis thaliana ... [more]
RTNLE_ARATH1.317e-4143.27Reticulon-like protein B5 OS=Arabidopsis thaliana ... [more]
RTNLF_ARATH5.005e-4144.06Reticulon-like protein B6 OS=Arabidopsis thaliana ... [more]
RTNLA_ARATH4.848e-3638.00Reticulon-like protein B1 OS=Arabidopsis thaliana ... [more]
RTNLC_ARATH2.406e-3537.75Reticulon-like protein B3 OS=Arabidopsis thaliana ... [more]
RTNLD_ARATH4.104e-3539.50Reticulon-like protein B4 OS=Arabidopsis thaliana ... [more]
RTNLB_ARATH3.474e-3435.10Reticulon-like protein B2 OS=Arabidopsis thaliana ... [more]
RTNLI_ARATH2.753e-3135.60Reticulon-like protein B9 OS=Arabidopsis thaliana ... [more]
RTNLG_ARATH7.496e-2934.52Reticulon-like protein B7 OS=Arabidopsis thaliana ... [more]
RTNLP_ARATH1.911e-2430.89Reticulon-like protein B16 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_12G09_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-12G09-N18-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671726 ID=CX671726; Name=CX671726; organism=Citrus sinensis; type=EST; length=869bp
TTTTTTTTTTTTTTTTTAGTGAAAAAGGGATTAGTAGTTATTTGGACTCT
TATAAATTCACCAGGTCAATATTCTATAATAATACATAATTCCACCATAA
TTAACATCAATAATATGACAATGTTGTCGTTACGTTCCATCACTAGTCAT
GGCAAGGGGGATATGTAAAATCTAATGTTTGATCAATCGATCTATTCGCT
TTTCTTCCCTTTGAACTTGCCCTTGGGGATTTTGCTGAGGAAACCTGAAT
CAAGCTTCTTGTACTGATTCTGGAGCTGCTGGAAGACATTGTTCAGAAAG
CTGTCAACTTTATCTTCATGCTTCTCATACAGGACTGGTAATGTATGGGC
AGCAACAAAACCAATATATAGAACGGTCAAAAGGTTACACCAGCTCCCTA
TCACAGCAGCAACCCACAAGCTTGCTACAGCCACAAGAAGTTGTTTCAGT
TTTCCTCCACATGCAATGTCCTGAAGTAGCCCCAGAGCTTCATTAACATT
AGCACAAACTGTCGTGCCAATGTTAGCAAATACCTCTGGAGGCAGAACAA
AGCGGGGAACTTTTGATGCTGATCTGTTAAATAAGCCCGAAATGTTTACC
CAAAAAAACTGAGCAAGCATGCCAAGGACCAAAGCAAAGCATACAATGGT
CAGAAAATGGTAGTTAAGCCATTCAAAGAGCACCCAAATTGCTGTTGCAC
CCATTAATACACTGGCTGATATCTTCTTGTTCCTCCATAACAAAACATCA
GCAGATTTTCCACCGCCCAAAAGATGGTGGACAGGTTTCTGGCGTCCGAA
CAGCCGATTGAAACGAGCAGTGACTGAGCTTGATGTCTCTTTCTCAAAAA
ATGATACAGCTTTCTGCTT
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