CX671719

Overview
NameCX671719
Unique NameCX671719
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length814
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671719 vs. ExPASy Swiss-Prot
Match: RF2_CYAP8 (Peptide chain release factor 2 OS=Cyanothece sp. (strain PCC 8801) GN=prfB PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.052e-13
Identity = 37/88 (42.05%), Postives = 55/88 (62.50%), Query Frame = -2
Query:   58 ERNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQLPDFNSVLDGNIKPFIEAHINS 321
            ER+   NK KAL  LKAKLL+I  EQ    ++ I+ + +   W  + R YV HPY++V+DV+T  +  D N V+DG +  FIE+++ S
Sbjct:  277 ERSQLQNKEKALALLKAKLLIIAQEQRAQAIAEIRGDMVEAAWGNQIRNYVFHPYQMVKDVRTNTETTDVNGVMDGKLDLFIESYLRS 364          
BLAST of CX671719 vs. ExPASy Swiss-Prot
Match: RF2_SYNY3 (Peptide chain release factor 2 OS=Synechocystis sp. (strain PCC 6803) GN=prfB PE=3 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.795e-13
Identity = 36/94 (38.30%), Postives = 57/94 (60.64%), Query Frame = -2
Query:   40 ERNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQLPDFNSVLDGNIKPFIEAHINSRRSSDT 321
            ER+   NK KAL  LKAKLL+++ EQ    ++ I+ + +   W  + R YV HPY+LV+D++T ++  D   V+DG +  FIEA++      D+
Sbjct:  279 ERSQLQNKEKALAILKAKLLIVLEEQRAQAIAEIRGDMVEAAWGTQIRNYVFHPYQLVKDLRTNVETTDVGGVMDGELSDFIEAYLRHSARLDS 372          
BLAST of CX671719 vs. ExPASy Swiss-Prot
Match: RF2_SYNPX (Peptide chain release factor 2 OS=Synechococcus sp. (strain WH8102) GN=prfB PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.820e-13
Identity = 35/86 (40.70%), Postives = 55/86 (63.95%), Query Frame = -2
Query:   64 ERNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQLPDFNSVLDGNIKPFIEAHI 321
            ER+   NK KA+  LKAKLLVI  EQ  + ++ I+ + +   W  + R YV HPY++V+D++T  +  D  +V+DG + PFI+A +
Sbjct:  276 ERSQLQNKEKAMALLKAKLLVIAQEQRAAEIADIRGDIVEAAWGNQIRNYVFHPYQMVKDLRTSEETNDVQAVMDGALDPFIDASL 361          
BLAST of CX671719 vs. ExPASy Swiss-Prot
Match: RF2_PROAC (Peptide chain release factor 2 OS=Propionibacterium acnes GN=prfB PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.385e-12
Identity = 38/102 (37.25%), Postives = 62/102 (60.78%), Query Frame = -2
Query:   37 VIFSSAGERNHFANKMKALNRLKAKLLVIVGEQGVSNVSCIKREAIVNIWQRETRRYVSHPYKLVQDVKTGIQLPDFNSVLDGNIKPFIEAHINSRRSSDTD 342
            ++ S   ER+   NK  AL  L+AKLL    E+  + ++ +K E   N W  + R YV HPY++V+D++T  ++ + ++V DG+I  FI+A I  RR ++TD
Sbjct:  269 IVVSCQNERSQIQNKAAALRVLQAKLLEKAREEQEAEMNSLKSEG--NSWGAQMRSYVLHPYQMVKDLRTNHEVGNTDAVFDGDIDDFIDAGIRWRRKNETD 368          
The following BLAST results are available for this feature:
BLAST of CX671719 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
RF2_CYAP81.052e-1342.05Peptide chain release factor 2 OS=Cyanothece sp. (... [more]
RF2_SYNY31.795e-1338.30Peptide chain release factor 2 OS=Synechocystis sp... [more]
RF2_SYNPX6.820e-1340.70Peptide chain release factor 2 OS=Synechococcus sp... [more]
RF2_PROAC3.385e-1237.25Peptide chain release factor 2 OS=Propionibacteriu... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS10_12G04_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-12G04-N8-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671719 ID=CX671719; Name=CX671719; organism=Citrus sinensis; type=EST; length=814bp
TTTTTTTTTTTTTTTTTAGGCAATAGTGAAGACTTAGTCTGTATCACTCG
ACCGTCTACTATTGATATGAGCTTCAATAAAAGGTTTAATGTTTCCATCC
AAAACAGAATTGAAGTCAGGCAGTTGGATGCCAGTTTTTACATCTTGTAC
TAGCTTGTATGGGTGAGAGACATACCTTCGCGTCTCTCTTTGCCATATAT
TGACGATGGCTTCTCTCTTTATGCAACTTACATTGGAAACTCCTTGCTCT
CCCACAATCACAAGAAGTTTGGCTTTCAATCGATTAAGGGCCTTCATCTT
ATTTGCAAAGTGGTTCCTCTCACCTGCAGATGAAAATATCACTTTTCTTC
TTCTTTGAAGTAACAGAAACCAGGGAGGAAATGCCATAGATACAAGATTA
AAAGTTATTTCCTCTGCTAGTGAAAAGAGAAGAGAATATAGTTAGGAAGT
GAATCAATTATTCACAGTGTGCAGTACAGTAACCATTTTATCAATGACTC
TAGGCAAACTAGGATTGCTATATGCAAACATTTCCTTCAATGAAACACAA
AGAATGCCAAACATTTCCTTTAATTTTGAGGACAATGGAAAAAACAAGAG
AGCAACAGAAGTATTTTGATAGGCTTCCTTAGGTGAATTAAAAGAAACTT
CTTCGGTGCATTATTTGTCAATAGCCAGTCAAATGATGTGTCATTCCAAC
TTATCATTCTGTGCACTAAAAACTCCAGGGTGAGGGAAAGTAGCATAACT
GAAACTCATAAAAAAAAAATTCCATTTCAACCTCCAGATAAGCACAGAAA
CAAAGAATGGAACC
back to top