CX671717

Overview
NameCX671717
Unique NameCX671717
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length828
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7027 contig Csv1_Contig7027:845..1672. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX671717 vs. ExPASy Swiss-Prot
Match: G3PB_PEA (Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic OS=Pisum sativum GN=GAPB PE=2 SV=2)

HSP 1 Score: 359.762 bits (922), Expect = 1.089e-98
Identity = 182/232 (78.45%), Postives = 190/232 (81.90%), Query Frame = -2
Query:  132 GVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAMTTTHSYTGDQXXXXXXXXXXXXXXXXXLNIVPTSTGAAKAVSLVMPQLKGKLNGIALRXXXXXXXXXXXXXXVEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVATKWPGVAAGGSGDPLEDFCQTNPADEECKVYE 827
            GVNE+DY HEVA+I+SNASCTTNCLAPF KV+DEE GIVKG MTTTHSYTGDQ                 LNIVPTSTGAAKAVSLV+PQLKGKLNGIALR              V KKGI+AEDVNAAFRKAAEGPLKGIL VCDVPLVSVDFRCSDVS+TIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVA KWPG    GSGDPLEDFC+TNPADEECKVYE
Sbjct:  220 GVNEQDYGHEVADIISNASCTTNCLAPFAKVLDEEFGIVKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVSLVLPQLKGKLNGIALRVPTPNVSVVDLVVNVAKKGISAEDVNAAFRKAAEGPLKGILDVCDVPLVSVDFRCSDVSTTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVANKWPGTPKVGSGDPLEDFCETNPADEECKVYE 451          
BLAST of CX671717 vs. ExPASy Swiss-Prot
Match: G3PB_ARATH (Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic OS=Arabidopsis thaliana GN=GAPB PE=1 SV=2)

HSP 1 Score: 358.221 bits (918), Expect = 3.167e-98
Identity = 179/232 (77.16%), Postives = 190/232 (81.90%), Query Frame = -2
Query:  132 GVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAMTTTHSYTGDQXXXXXXXXXXXXXXXXXLNIVPTSTGAAKAVSLVMPQLKGKLNGIALRXXXXXXXXXXXXXXVEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVATKWPGVAAGGSGDPLEDFCQTNPADEECKVYE 827
            GVNE+DY H+VANI+SNASCTTNCLAPF KV+DEE GIVKG MTTTHSYTGDQ                 LNIVPTSTGAAKAVSLV+PQLKGKLNGIALR              VEKKG+TAEDVN AFRKAA GP+KGIL VCD PLVSVDFRCSDVS+TIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVA+KWPG  A GSGDPLEDFC+TNPADEECKVY+
Sbjct:  216 GVNEQDYGHDVANIISNASCTTNCLAPFAKVLDEEFGIVKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVSLVLPQLKGKLNGIALRVPTPNVSVVDLVINVEKKGLTAEDVNEAFRKAANGPMKGILDVCDAPLVSVDFRCSDVSTTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVASKWPGAEAVGSGDPLEDFCKTNPADEECKVYD 447          
BLAST of CX671717 vs. ExPASy Swiss-Prot
Match: G3PB_SPIOL (Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic OS=Spinacia oleracea GN=GAPB PE=1 SV=1)

HSP 1 Score: 344.739 bits (883), Expect = 3.624e-94
Identity = 175/233 (75.11%), Postives = 186/233 (79.83%), Query Frame = -2
Query:  132 GVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAMTTTHSYTGDQXXXXXXXXXXXXXXXXXLNIVPTSTGAAKAVSLVMPQLKGKLNGIALRXXXXXXXXXXXXXXVEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVATKWPGVAAG-GSGDPLEDFCQTNPADEECKVYE 827
            GVNEKDY H+VANI+SNASCTTNCLAPFVKV+DEELGIVKG MTTTHSYTGDQ                 LNIVPTSTGAAKAVSLV+PQLKGKLNGIALR              +EK G+TAEDVN AFRKAA GPLKG+L VCD+PLVSVDFRCSD SSTIDSSLTMVMG DMVKVVAWYDNEWGYSQRVVDLA LVA KWPG+     SGDPLEDFC+ NPADEECK+YE
Sbjct:  219 GVNEKDYGHDVANIISNASCTTNCLAPFVKVLDEELGIVKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVSLVLPQLKGKLNGIALRVPTPNVSVVDLVVNIEKVGVTAEDVNNAFRKAAAGPLKGVLDVCDIPLVSVDFRCSDFSSTIDSSLTMVMGGDMVKVVAWYDNEWGYSQRVVDLADLVANKWPGLEGSVASGDPLEDFCKDNPADEECKLYE 451          
BLAST of CX671717 vs. ExPASy Swiss-Prot
Match: G3PB_TOBAC (Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic (Fragment) OS=Nicotiana tabacum GN=GAPB PE=2 SV=1)

HSP 1 Score: 315.849 bits (808), Expect = 1.143e-87
Identity = 162/205 (79.02%), Postives = 168/205 (81.95%), Query Frame = -2
Query:  213 GVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAMTTTHSYTGDQXXXXXXXXXXXXXXXXXLNIVPTSTGAAKAVSLVMPQLKGKLNGIALRXXXXXXXXXXXXXXVEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVATKWPG 827
            GVNE+DY HEVA+I+SNASCTTNCLAPFVKVMDEELGIVKG MTTTHSYTGDQ                 LNIVPTSTGAAKAVSLV+PQLKGKLNGIALR              V KKGITAEDVNAAFRKAA+GPLKG+LAVCD PLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVA  WPG
Sbjct:  189 GVNEQDYSHEVADIISNASCTTNCLAPFVKVMDEELGIVKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVSLVLPQLKGKLNGIALRVPTPNVSVVDLVVNVAKKGITAEDVNAAFRKAADGPLKGVLAVCDEPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVANNWPG 393          

HSP 2 Score: 29.261 bits (64), Expect = 1.143e-87
Identity = 13/23 (56.52%), Postives = 16/23 (69.57%), Query Frame = -3
Query:  122 THWRISARQTLLMRSAKFMKLKF 190
            +HW   ARQ LLMR+AK M  +F
Sbjct:  402 SHWMSFARQILLMRNAKSMNNRF 424          
BLAST of CX671717 vs. ExPASy Swiss-Prot
Match: G3PA_SPIOL (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Spinacia oleracea GN=GAPA PE=1 SV=2)

HSP 1 Score: 262.692 bits (670), Expect = 1.811e-69
Identity = 137/203 (67.49%), Postives = 154/203 (75.86%), Query Frame = -2
Query:  219 GVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAMTTTHSYTGDQXXXXXXXXXXXXXXXXXLNIVPTSTGAAKAVSLVMPQLKGKLNGIALRXXXXXXXXXXXXXXVEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVATKW 827
            GVNE+ Y H    I+SNASCTTNCLAPFVKV+D++ GI+KG MTTTHSYTGDQ                 LNIVPTSTGAAKAV+LV+P LKGKLNGIALR              V KK   AE+VNAAFR++A+  LKGIL+VCD PLVS+DFRC+DVSSTIDSSLTMVMGDDMVKV+AWYDNEWGYSQRVVDLA +VA KW
Sbjct:  200 GVNEEGYTH-ADTIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAACLNIVPTSTGAAKAVALVLPNLKGKLNGIALRVPTPNVSVVDLVVQVSKKTF-AEEVNAAFRESADNELKGILSVCDEPLVSIDFRCTDVSSTIDSSLTMVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANKW 400          
BLAST of CX671717 vs. ExPASy Swiss-Prot
Match: G3PA_SINAL (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic (Fragment) OS=Sinapis alba GN=GAPA PE=2 SV=1)

HSP 1 Score: 260.766 bits (665), Expect = 6.882e-69
Identity = 140/203 (68.97%), Postives = 151/203 (74.38%), Query Frame = -2
Query:  219 GVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAMTTTHSYTGDQXXXXXXXXXXXXXXXXXLNIVPTSTGAAKAVSLVMPQLKGKLNGIALRXXXXXXXXXXXXXXVEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVATKW 827
            GVN + Y HE   I+SNASCTTNCLAPFVKV+D++ GI+KG MTTTHSYTGDQ                 LNIVPTSTGAAKAV+LV+P LKGKLNGIALR              V KK   AE+VNAAFR AAE  LKGIL VCD PLVSVDFRCSDVSSTIDSSLTMVMGDDMVKV+AWYDNEWGYSQRVVDLA +VA  W
Sbjct:   32 GVNAELYSHE-DTIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPNLKGKLNGIALRVPTPNVSVVDLVVQVSKKTF-AEEVNAAFRDAAEKELKGILDVCDEPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNW 232          
BLAST of CX671717 vs. ExPASy Swiss-Prot
Match: G3PA_CHLRE (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Chlamydomonas reinhardtii GN=GAPA PE=1 SV=1)

HSP 1 Score: 257.299 bits (656), Expect = 7.609e-68
Identity = 135/203 (66.50%), Postives = 153/203 (75.37%), Query Frame = -2
Query:  219 GVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAMTTTHSYTGDQXXXXXXXXXXXXXXXXXLNIVPTSTGAAKAVSLVMPQLKGKLNGIALRXXXXXXXXXXXXXXVEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVATKW 827
            GVNE DY HE   I+SNASCTTNCLAPFVKV++++ GIVKG MTTTHSYTGDQ                 LNIVPT+TGAAKAVSLV+P LKGKLNGIALR              VEKK   AE+VNAAFR+AA GP+KG+L V D PLVS+DF+C+D S++ID+SLTMVMGDDMVKVVAWYDNEWGYSQRVVDLA + A KW
Sbjct:  172 GVNEGDYKHEYP-IISNASCTTNCLAPFVKVLEQKFGIVKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTTTGAAKAVSLVLPSLKGKLNGIALRVPTPTVSVVDLVVQVEKKTF-AEEVNAAFREAANGPMKGVLHVEDAPLVSIDFKCTDQSTSIDASLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAEVTAKKW 372          
BLAST of CX671717 vs. ExPASy Swiss-Prot
Match: G3PA_ARATH (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Arabidopsis thaliana GN=GAPA PE=1 SV=3)

HSP 1 Score: 254.988 bits (650), Expect = 3.776e-67
Identity = 136/203 (67.00%), Postives = 149/203 (73.40%), Query Frame = -2
Query:  219 GVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAMTTTHSYTGDQXXXXXXXXXXXXXXXXXLNIVPTSTGAAKAVSLVMPQLKGKLNGIALRXXXXXXXXXXXXXXVEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVATKW 827
            GVN   Y H+   I+SNASCTTNCLAPFVKV+D++ GI+KG MTTTHSYTGDQ                 LNIVPTSTGAAKAV+LV+P LKGKLNGIALR              V KK   AE+VNAAFR +AE  LKGIL VCD PLVSVDFRCSD S+TIDSSLTMVMGDDMVKV+AWYDNEWGYSQRVVDLA +VA  W
Sbjct:  195 GVNADAYSHDEP-IISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPNLKGKLNGIALRVPTPNVSVVDLVVQVSKKTF-AEEVNAAFRDSAEKELKGILDVCDEPLVSVDFRCSDFSTTIDSSLTMVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNW 395          
BLAST of CX671717 vs. ExPASy Swiss-Prot
Match: G3PA_MAIZE (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Zea mays GN=GAPA PE=2 SV=1)

HSP 1 Score: 251.521 bits (641), Expect = 4.175e-66
Identity = 134/203 (66.01%), Postives = 149/203 (73.40%), Query Frame = -2
Query:  219 GVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAMTTTHSYTGDQXXXXXXXXXXXXXXXXXLNIVPTSTGAAKAVSLVMPQLKGKLNGIALRXXXXXXXXXXXXXXVEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVATKW 827
            GVN   Y+ +   I+SNASCTTNCLAPFVKV+D++ GI+KG MTTTHSYTGDQ                 LNIVPTSTGAAKAVSLV+P LKGKLNGIALR              V KK + AE+VN AFR AA   L GIL VCDVPLVSVDFRCSDVSSTID+SLTMVMGDDMVKV++WYDNEWGYSQRVVDLA + A +W
Sbjct:  202 GVNADQYNPDEP-IISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVSLVLPNLKGKLNGIALRVPTPNVSVVDLVVQVSKKTL-AEEVNQAFRDAAANELTGILEVCDVPLVSVDFRCSDVSSTIDASLTMVMGDDMVKVISWYDNEWGYSQRVVDLADICANQW 402          
BLAST of CX671717 vs. ExPASy Swiss-Prot
Match: G3PA_PEA (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Pisum sativum GN=GAPA PE=2 SV=2)

HSP 1 Score: 249.98 bits (637), Expect = 1.215e-65
Identity = 132/203 (65.02%), Postives = 149/203 (73.40%), Query Frame = -2
Query:  219 GVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAMTTTHSYTGDQXXXXXXXXXXXXXXXXXLNIVPTSTGAAKAVSLVMPQLKGKLNGIALRXXXXXXXXXXXXXXVEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVATKW 827
            GVN   Y H   +I+SNASCTTNCLAPFVKV+D++ GI+KG MTTTHSYTGDQ                 LNIVPTSTGAAKAV+LV+P LKGKLNGIALR              V KK   AE+VN AFR++A   L GIL+VCD PLVSVDFRC+DVSST+DSSLTMVMGDD+VKV+AWYDNEWGYSQRVVDLA +VA  W
Sbjct:  204 GVNADAYTH-ADDIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPTLKGKLNGIALRVPTPNVSVVDLVVQVSKKTF-AEEVNEAFRESAAKELTGILSVCDEPLVSVDFRCTDVSSTVDSSLTMVMGDDLVKVIAWYDNEWGYSQRVVDLADIVANNW 404          
The following BLAST results are available for this feature:
BLAST of CX671717 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 349
Match NameE-valueIdentityDescription
G3PB_PEA1.089e-9878.45Glyceraldehyde-3-phosphate dehydrogenase B, chloro... [more]
G3PB_ARATH3.167e-9877.16Glyceraldehyde-3-phosphate dehydrogenase B, chloro... [more]
G3PB_SPIOL3.624e-9475.11Glyceraldehyde-3-phosphate dehydrogenase B, chloro... [more]
G3PB_TOBAC1.143e-8779.02Glyceraldehyde-3-phosphate dehydrogenase B, chloro... [more]
G3PA_SPIOL1.811e-6967.49Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PA_SINAL6.882e-6968.97Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PA_CHLRE7.609e-6866.50Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PA_ARATH3.776e-6767.00Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PA_MAIZE4.175e-6666.01Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PA_PEA1.215e-6565.02Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_12G03_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-12G03-N6-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671717 ID=CX671717; Name=CX671717; organism=Citrus sinensis; type=EST; length=828bp
TTTTTTTTTTTTTTTTTGATAAATTGTCTGTTCAACTCACTCAGTTGTCA
TTAATATAAAAGCATTTTGTGACAAAGGCTGCGAAAAACCTATGTAATTA
ATTAGCCAACCAATTAAGAAAGAATTTAAGCTTCATAAACTTTGCACTCC
TCATCAGCAGGGTTTGTCTGGCAGAAATCCTCCAATGGGTCTCCGCTTCC
GCCTGCAGCCACGCCTGGCCACTTGGTTGCAACCAAATGCGCCAAATCGA
CAACCCTTTGGCTGTATCCCCATTCATTGTCGTACCAGGCAACAACCTTG
ACCATATCATCACCCATGACCATGGTCAATGAAGAGTCAATGGTGGAGGA
AACATCAGAGCATCGGAAGTCCACCGACACCAGTGGAACATCGCAGACGG
CCAATATGCCCTTCAGTGGCCCCTCAGCAGCCTTTCTGAAGGCTGCATTA
ACATCTTCTGCTGTAATACCCTTTTTCTCAACGTTCACAACAAGGTCAAC
GACTGAAACATTTGGTGTTGGCACACGGAGCGCAATGCCGTTGAGCTTGC
CTTTGAGCTGTGGCATCACAAGAGAAACAGCCTTGGCGGCACCTGTGCTC
GTTGGGACAATGTTCAACGCTGCAGCTCTCGCTCTCCTCAAGTCCCTGTG
TGAAGCATCCAAGAGCCTCTGGTCTCCAGTGTAGGAGTGAGTAGTTGTCA
TCGCTCCCTTGACAATCCCCAATTCTTCATCCATGACCTTCACAAAAGGA
GCCAAACAGTTTGTGGTGCAAGAAGCATTGCTCACAATGTTTGCAACCTC
GTGATCGTAATCCTTCTCGTTAACTCCA
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