CX671707
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX671707 vs. ExPASy Swiss-Prot
Match: HDA19_ARATH (Histone deacetylase 19 OS=Arabidopsis thaliana GN=HDA19 PE=1 SV=2) HSP 1 Score: 400.979 bits (1029), Expect = 4.986e-111 Identity = 187/235 (79.57%), Postives = 214/235 (91.06%), Query Frame = -2 Query: 209 VMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGVEVDDKMPQHEYYEYFGPDYTLHVAPSNMENKNSRQLLEEIRNKLLEYLSKLQHAPSVQFQERPPDSELPEADEDQEDGDERWDPDSDMDVDDERKSLPNRVKREAVEPEQKDREGLKGMAEQARGFDMIADDSISTKVLDMSSMPIDEPSIKVEQENMSK 913 VME+FRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGVEV+DKMP+HEYYEYFGPDYTLHVAPSNMENKNSRQ+LEEIRN LL LSKLQHAPSV FQERPPD+E PE DEDQEDGD+RWDPDSDMDVDD+RK +P+RVKREAVEP+ KD++GLKG+ E+ +G ++ D+S STKV ++ + ++E S+K+E+E +K Sbjct: 256 VMEIFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGVEVEDKMPEHEYYEYFGPDYTLHVAPSNMENKNSRQMLEEIRNDLLHNLSKLQHAPSVPFQERPPDTETPEVDEDQEDGDKRWDPDSDMDVDDDRKPIPSRVKREAVEPDTKDKDGLKGIMERGKGCEVEVDESGSTKVTGVNPVGVEEASVKMEEEGTNK 490
BLAST of CX671707 vs. ExPASy Swiss-Prot
Match: HDA19_MAIZE (Probable histone deacetylase 19 OS=Zea mays PE=2 SV=1) HSP 1 Score: 318.161 bits (814), Expect = 4.250e-86 Identity = 167/247 (67.61%), Postives = 196/247 (79.35%), Query Frame = -2 Query: 209 VMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGVEVDDKMPQHEYYEYFGPDYTLHVAPSNMENKNSRQLLEEIRNKLLEYLSKLQHAPSVQFQERPPDSELPEADEDQEDGDERWDPDSDMDVDD--------ERKSLPNRVKREAVEPEQKDREGLKGMAEQARGFDMIADDSISTK---VLDMSSMPIDEPS-IKVEQENMSK 913 VMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECV++MRSFNVPLLLLGGGGYTIRNVARCWCYETGVALG E +DKMP +EYYEYFGPDYTLHVAPSNMENKN+RQ L++IR+K LSKL+HAPSV FQER PD+E+PE DEDQ+D DER DPDSDM+VDD R L ++KRE E + ++G + +A + RG + +A+D S+K D S+M IDEPS +K E E+ +K Sbjct: 261 VMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVRYMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGQEPEDKMPVNEYYEYFGPDYTLHVAPSNMENKNTRQQLDDIRSK----LSKLRHAPSVHFQERVPDTEIPEQDEDQDDPDERHDPDSDMEVDDHKAVEESSRRSILGIKIKREFGENATRVQDGGR-VASEHRGLEPMAEDIGSSKQAPQADASAMAIDEPSNVKNEPESSTK 502
BLAST of CX671707 vs. ExPASy Swiss-Prot
Match: HDA6_ARATH (Histone deacetylase 6 OS=Arabidopsis thaliana GN=HDA6 PE=1 SV=1) HSP 1 Score: 234.958 bits (598), Expect = 4.732e-61 Identity = 115/177 (64.97%), Postives = 140/177 (79.10%), Query Frame = -2 Query: 410 VMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGVEVDDKMPQHEYYEYFGPDYTLHVAPSNMENKNSRQLLEEIRNKLLEYLSKLQHAPSVQFQERPPDSELPEADEDQEDGDERWDP---------DSDMDVDDE 913 VMEV++P AVVLQCGADSLSGDRLGCFNLS+KGHA+C++F+RS+NVPL++LGGGGYTIRNVARCWCYET VA+GVE D+K+P +EY+EYFGPDYTLHV PS MEN N+ + +E IRN LLE LS L HAPSVQFQ PP + + DE ++D + R P +SD D DD+ Sbjct: 260 VMEVYQPEAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRSYNVPLMVLGGGGYTIRNVARCWCYETAVAVGVEPDNKLPYNEYFEYFGPDYTLHVDPSPMENLNTPKDMERIRNTLLEQLSGLIHAPSVQFQHTPPVNRV--LDEPEDDMETRPKPRIWSGTATYESDSDDDDK 434
BLAST of CX671707 vs. ExPASy Swiss-Prot
Match: HDAC1_RAT (Histone deacetylase 1 OS=Rattus norvegicus GN=Hdac1 PE=2 SV=1) HSP 1 Score: 224.942 bits (572), Expect = 4.897e-58 Identity = 114/218 (52.29%), Postives = 154/218 (70.64%), Query Frame = -2 Query: 317 VMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGVEVDDKMPQHEYYEYFGPDYTLHVAPSNMENKNSRQLLEEIRNKLLEYLSKLQHAPSVQFQERPPDSELPE--ADEDQEDGDERWD--------------PDSDMDVDDERKSLPNRVKREAVEPE---QKDREGLKGMAEQAR 913 VME+F+P AVVLQCG+DSLSGDRLGCFNL+IKGHA+CV+F++SFN+P+L+LGGGGYTIRNVARCW YET VAL E+ +++P ++Y+EYFGPD+ LH++PSNM N+N+ + LE+I+ +L E L L HAP VQ Q P D+ +PE DED+ED D+R DSD + + RK+ N K + V+ E +KD E K + E+ + Sbjct: 248 VMEMFQPSAVVLQCGSDSLSGDRLGCFNLTIKGHAKCVEFVKSFNLPMLMLGGGGYTIRNVARCWTYETAVALDTEIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTNEYLEKIKQRLFENLRMLPHAPGVQMQAIPEDA-IPEESGDEDEEDPDKRISICSSDKRIACEEEFSDSDEEGEGGRKNSSNFKKAKRVKTEDEKEKDPEEKKEVTEEEK 464
BLAST of CX671707 vs. ExPASy Swiss-Prot
Match: HDAC1_MOUSE (Histone deacetylase 1 OS=Mus musculus GN=Hdac1 PE=1 SV=1) HSP 1 Score: 224.942 bits (572), Expect = 4.897e-58 Identity = 114/218 (52.29%), Postives = 154/218 (70.64%), Query Frame = -2 Query: 317 VMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGVEVDDKMPQHEYYEYFGPDYTLHVAPSNMENKNSRQLLEEIRNKLLEYLSKLQHAPSVQFQERPPDSELPE--ADEDQEDGDERWD--------------PDSDMDVDDERKSLPNRVKREAVEPE---QKDREGLKGMAEQAR 913 VME+F+P AVVLQCG+DSLSGDRLGCFNL+IKGHA+CV+F++SFN+P+L+LGGGGYTIRNVARCW YET VAL E+ +++P ++Y+EYFGPD+ LH++PSNM N+N+ + LE+I+ +L E L L HAP VQ Q P D+ +PE DED+ED D+R DSD + + RK+ N K + V+ E +KD E K + E+ + Sbjct: 248 VMEMFQPSAVVLQCGSDSLSGDRLGCFNLTIKGHAKCVEFVKSFNLPMLMLGGGGYTIRNVARCWTYETAVALDTEIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTNEYLEKIKQRLFENLRMLPHAPGVQMQAIPEDA-IPEESGDEDEEDPDKRISICSSDKRIACEEEFSDSDEEGEGGRKNSSNFKKAKRVKTEDEKEKDPEEKKEVTEEEK 464
BLAST of CX671707 vs. ExPASy Swiss-Prot
Match: HDAC1_BOVIN (Histone deacetylase 1 OS=Bos taurus GN=HDAC1 PE=2 SV=1) HSP 1 Score: 224.942 bits (572), Expect = 4.897e-58 Identity = 114/218 (52.29%), Postives = 154/218 (70.64%), Query Frame = -2 Query: 317 VMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGVEVDDKMPQHEYYEYFGPDYTLHVAPSNMENKNSRQLLEEIRNKLLEYLSKLQHAPSVQFQERPPDSELPE--ADEDQEDGDERWD--------------PDSDMDVDDERKSLPNRVKREAVEPE---QKDREGLKGMAEQAR 913 VME+F+P AVVLQCG+DSLSGDRLGCFNL+IKGHA+CV+F++SFN+P+L+LGGGGYTIRNVARCW YET VAL E+ +++P ++Y+EYFGPD+ LH++PSNM N+N+ + LE+I+ +L E L L HAP VQ Q P D+ +PE DED+ED D+R DSD + + RK+ N K + V+ E +KD E K + E+ + Sbjct: 248 VMEMFQPSAVVLQCGSDSLSGDRLGCFNLTIKGHAKCVEFVKSFNLPMLMLGGGGYTIRNVARCWTYETAVALDTEIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTNEYLEKIKQRLFENLRMLPHAPGVQMQAIPEDA-IPEESGDEDEEDPDKRISICSSDKRIACEEEFSDSDEEGEGGRKNSSNFKKAKRVKTEDEKEKDPEEKKEVTEEEK 464
BLAST of CX671707 vs. ExPASy Swiss-Prot
Match: HDA1B_XENLA (Probable histone deacetylase 1-B OS=Xenopus laevis GN=hdac1-B PE=1 SV=1) HSP 1 Score: 223.402 bits (568), Expect = 1.425e-57 Identity = 114/223 (51.12%), Postives = 157/223 (70.40%), Query Frame = -2 Query: 296 VMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGVEVDDKMPQHEYYEYFGPDYTLHVAPSNMENKNSRQLLEEIRNKLLEYLSKLQHAPSVQFQERPPDSELPEA-DEDQEDGDERWD--------------PDSDMDVDDERKSLPN--RVKREAVEPEQKDREGLKGMAEQARGFDMIAD 913 VME+F+P AVVLQCGADSLSGDRLGCFNL+IKGHA+CV+F+++FN+P+L+LGGGGYTIRNVARCW YET VAL E+ +++P ++Y+EYFGPD+ LH++PSNM N+N+ + LE+I+ +L E L L HAP VQ Q P DS ++ +ED+ED D+R DS+ + + RK++ N +VKR E E+K+ E K + E+ + D D Sbjct: 248 VMEMFQPSAVVLQCGADSLSGDRLGCFNLTIKGHAKCVEFIKTFNLPMLMLGGGGYTIRNVARCWTYETAVALDSEIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTNEYLEKIKQRLFENLRMLPHAPGVQMQAIPEDSVHDDSGEEDEEDPDKRISIRSSDKRIACDEEFSDSEDEGEGGRKNVANFKKVKRVKTE-EEKEGEDKKDVKEEEKAKDEKTD 469
BLAST of CX671707 vs. ExPASy Swiss-Prot
Match: HDAC1_PONAB (Histone deacetylase 1 OS=Pongo abelii GN=HDAC1 PE=2 SV=1) HSP 1 Score: 222.246 bits (565), Expect = 3.174e-57 Identity = 112/218 (51.38%), Postives = 154/218 (70.64%), Query Frame = -2 Query: 317 VMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGVEVDDKMPQHEYYEYFGPDYTLHVAPSNMENKNSRQLLEEIRNKLLEYLSKLQHAPSVQFQERPPDSELPE--ADEDQEDGDERWD--------------PDSDMDVDDERKSLPNRVKREAVEPE---QKDREGLKGMAEQAR 913 VME+F+P AVVLQCG+DSLSGDRLGCFNL+IKGHA+CV+F++SFN+P+L+LGGGGYTIRNVARCW YET VAL E+ +++P ++Y+EYFGPD+ LH++PSNM N+N+ + LE+I+ +L E L L HAP VQ Q P D+ +PE DED++D D+R DS+ + + RK+ N K + V+ E +KD E K + E+ + Sbjct: 248 VMEMFQPSAVVLQCGSDSLSGDRLGCFNLTIKGHAKCVEFVKSFNLPMLMLGGGGYTIRNVARCWTYETAVALDTEIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTNEYLEKIKQRLFENLRMLPHAPGVQMQAIPEDA-IPEESGDEDEDDPDKRISICSSDKRIACEEEFSDSEEEGEGGRKNSSNFKKAKRVKTEDEKEKDPEEKKEVTEEEK 464
BLAST of CX671707 vs. ExPASy Swiss-Prot
Match: HDAC1_HUMAN (Histone deacetylase 1 OS=Homo sapiens GN=HDAC1 PE=1 SV=1) HSP 1 Score: 222.246 bits (565), Expect = 3.174e-57 Identity = 112/218 (51.38%), Postives = 154/218 (70.64%), Query Frame = -2 Query: 317 VMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGVEVDDKMPQHEYYEYFGPDYTLHVAPSNMENKNSRQLLEEIRNKLLEYLSKLQHAPSVQFQERPPDSELPE--ADEDQEDGDERWD--------------PDSDMDVDDERKSLPNRVKREAVEPE---QKDREGLKGMAEQAR 913 VME+F+P AVVLQCG+DSLSGDRLGCFNL+IKGHA+CV+F++SFN+P+L+LGGGGYTIRNVARCW YET VAL E+ +++P ++Y+EYFGPD+ LH++PSNM N+N+ + LE+I+ +L E L L HAP VQ Q P D+ +PE DED++D D+R DS+ + + RK+ N K + V+ E +KD E K + E+ + Sbjct: 248 VMEMFQPSAVVLQCGSDSLSGDRLGCFNLTIKGHAKCVEFVKSFNLPMLMLGGGGYTIRNVARCWTYETAVALDTEIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTNEYLEKIKQRLFENLRMLPHAPGVQMQAIPEDA-IPEESGDEDEDDPDKRISICSSDKRIACEEEFSDSEEEGEGGRKNSSNFKKAKRVKTEDEKEKDPEEKKEVTEEEK 464
BLAST of CX671707 vs. ExPASy Swiss-Prot
Match: HDA1A_XENLA (Probable histone deacetylase 1-A OS=Xenopus laevis GN=hdac1-A PE=1 SV=1) HSP 1 Score: 219.55 bits (558), Expect = 2.057e-56 Identity = 113/223 (50.67%), Postives = 156/223 (69.96%), Query Frame = -2 Query: 296 VMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGVEVDDKMPQHEYYEYFGPDYTLHVAPSNMENKNSRQLLEEIRNKLLEYLSKLQHAPSVQFQERPPDSELPEA-DEDQEDGDERWD--------------PDSDMDVDDERKSLPN--RVKREAVEPEQKDREGLKGMAEQARGFDMIAD 913 VME+F+P AVVLQCGADSLSGDRLGCFNL+IKGHA+CV+F+++FN+PLL+LGGGGYTIRNVARCW YET VAL E+ +++P ++Y+EYFGPD+ LH++PSNM N+N+ + LE+I+ +L E L L HAP VQ Q DS ++ +ED++D D+R DS+ + + RK++ N +VKR E E+K+ E K + E+ + D D Sbjct: 248 VMEMFQPSAVVLQCGADSLSGDRLGCFNLTIKGHAKCVEFIKTFNLPLLMLGGGGYTIRNVARCWTYETAVALDSEIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTNEYLEKIKQRLFENLRMLPHAPGVQMQAVAEDSIHDDSGEEDEDDPDKRISIRSSDKRIACDEEFSDSEDEGEGGRKNVANFKKVKRVKTE-EEKEGEDKKDVKEEEKAKDEKTD 469 The following BLAST results are available for this feature:
BLAST of CX671707 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 44
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX671707 ID=CX671707; Name=CX671707; organism=Citrus sinensis; type=EST; length=914bpback to top |