CX671677

Overview
NameCX671677
Unique NameCX671677
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length891
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671677 vs. ExPASy Swiss-Prot
Match: NCBP1_ARATH (Nuclear cap-binding protein subunit 1 OS=Arabidopsis thaliana GN=ABH1 PE=1 SV=2)

HSP 1 Score: 239.195 bits (609), Expect = 2.416e-62
Identity = 127/246 (51.63%), Postives = 166/246 (67.48%), Query Frame = -1
Query:  157 ENIDQFHASDRPWEVLRNAVSKTYNRICDLRKEIISLKKGVTXXXXXXXXXXXXXXXXXXXXXLVDGEPVLGGNPARLSRLKLHAEKAKNEEISAKESLEAKEALFARAVEENEALYLSLYRNFSNVLMERLPDASRAGTLQDLKSTHADAMAVDLEEPSAMELDNEDGRPKKSQXXXXXXXNVYNIGEKEQWCLSTLGYVKAFSRQYASEIWPHMEKLDAEVLS-EDTHPLFRRAVYSGLRRPIN 891
            EN+DQFH SD+PWE+L NA++KTYNRI DLRK+I ++ K V                      LV+GEPVLG NPA++ RLK   EK    E+S +ESLEAKEAL  RA+ E E L L L+++F  VL ERLPD ++  ++QDLKS  A+      ++PSAM++D+E+G PKKS            +GE+EQWCLSTLGY+ AF+RQYASEIWPHMEKL++EV S ED HPLF +A+ S L+ P++
Sbjct:  618 ENVDQFHVSDQPWEILGNALNKTYNRISDLRKDISNITKNVLVAEKASANARVELEAAESKLSLVEGEPVLGENPAKMKRLKSTVEKTGEAELSLRESLEAKEALLNRALSETEVLLLLLFQSFLGVLKERLPDPTKVRSVQDLKSIGAED-----DKPSAMDVDSENGNPKKS----------CEVGEREQWCLSTLGYLTAFTRQYASEIWPHMEKLESEVFSGEDVHPLFLQAISSALQFPLH 848          
BLAST of CX671677 vs. ExPASy Swiss-Prot
Match: NCBP1_ORYSJ (Nuclear cap-binding protein subunit 1 OS=Oryza sativa subsp. japonica GN=ABH1 PE=2 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 1.241e-58
Identity = 120/244 (49.18%), Postives = 158/244 (64.75%), Query Frame = -1
Query:  163 NIDQFHASDRPWEVLRNAVSKTYNRICDLRKEIISLKKGVTXXXXXXXXXXXXXXXXXXXXXLVDGEPVLGGNPARLSRLKLHAEKAKNEEISAKESLEAKEALFARAVEENEALYLSLYRNFSNVLMERLPDASRAGTLQDLKS--THADAMAVDLEEPSAMELDNEDGRPKKSQXXXXXXXNVYNIGEKEQWCLSTLGYVKAFSRQYASEIWPHMEKLDAEVLSEDTHPLFRRAVYSGLRRP 888
            N+DQFH SDRPWE+LRNAVSKTYNRI DLRKEI +L+KG+                      +VDG+PV   NP RL RL+  A+KAK  E++ +ESLEAKEAL AR +EE++ L   L+++F  VL ERLP  S  G + +L++   + ++ A D  E + ME+DNE+G    SQ         +N+GE EQWCL TLGY+K+FSRQYA+EIW H+  LD E+   + HPL R+A +SGL RP
Sbjct:  618 NVDQFHVSDRPWEILRNAVSKTYNRIFDLRKEIQTLRKGLQAAKEASEKAARELEEAKSIIEIVDGQPVPSENPGRLRRLQARADKAKEGEVTTEESLEAKEALLARGLEESKELLRLLFKSFVEVLTERLPPISADGDVPNLRAGDPNVNSSARD-PEATTMEIDNENGGDNDSQLNGQNKKISHNVGELEQWCLCTLGYLKSFSRQYATEIWSHIAMLDQEIFVGNIHPLIRKAAFSGLCRP 860          
The following BLAST results are available for this feature:
BLAST of CX671677 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
NCBP1_ARATH2.416e-6251.63Nuclear cap-binding protein subunit 1 OS=Arabidops... [more]
NCBP1_ORYSJ1.241e-5849.18Nuclear cap-binding protein subunit 1 OS=Oryza sat... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS10_12E03_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-12E03-J6-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671677 ID=CX671677; Name=CX671677; organism=Citrus sinensis; type=EST; length=891bp
TTTTTTTAATTGCAAATTTTGCTGATAGACATGATTTCTTTCTCGTGCAT
CTGTTTTGACATTTTTACACTAAATGATTTAAAAACAAGGGTAAAACTTT
GTAAAAAGAAGAAAAGAAGTGATAATTTACACCAGGAATTAGAGGTATCA
GACCTAGTTGATGGGTCGGCGTAGACCAGAATAAACTGCTCTGCGGAAAA
GAGGATGTGTATCTTCACTTAATACCTCTGCATCCAGCTTCTCCATATGT
GGCCATATCTCAGAAGCATATTGTCTTGAAAAGGCCTTCACATAACCCAG
AGTTGATAGACACCACTGCTCCTTTTCACCTATGTTGTAGACATTGCCTG
AGCTCCCACCATTTGACTGACTCTTTTTAGGTCTTCCATCCTCATTGTCC
AGTTCCATTGCCGATGGCTCTTCAAGATCAACAGCCATTGCATCTGCATG
GGTAGATTTTAAATCTTGCAAAGTTCCAGCTCTAGATGCATCTGGTAGGC
GTTCCATCAACACATTTGAGAAGTTTCTGTAAAGAGAAAGATATAGTGCC
TCATTTTCTTCTACAGCTCGAGCAAAAAGAGCCTCCTTGGCCTCTAAAGA
CTCTTTTGCTGATATCTCCTCGTTTTTAGCTTTTTCGGCATGTAATTTCA
GACGACTCAACCTTGCAGGATTTCCACCAAGAACAGGTTCACCATCAACT
AAAGAAAGCTTTGACTCAGCAGCTTCTAACTCTGCTTTGGCCTTAGCTGC
AGCTTCTTCTGCTAATGTAACACCCTTCTTAAGAGATATAATCTCTTTCC
TTAGATCACAGATACGATTATATGTCTTGCTAACTGCATTCCTAAGGACC
TCCCATGGACGATCTGAAGCATGAAATTGGTCAATGTTTTC
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