CX671676

Overview
NameCX671676
Unique NameCX671676
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length710
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9964 contig Csv1_Contig9964:28..736. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX671676 vs. ExPASy Swiss-Prot
Match: TOC33_ARATH (Translocase of chloroplast 33, chloroplastic OS=Arabidopsis thaliana GN=TOC33 PE=1 SV=1)

HSP 1 Score: 254.988 bits (650), Expect = 2.928e-67
Identity = 124/166 (74.70%), Postives = 149/166 (89.76%), Query Frame = 2
Query:  152 MGSLLLREWAGFQQFPSATQNKLIELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 649
            MGSL+ REW GFQQFP+ATQ KLIE   KLKQ+++N++T+LV+GKGGVGKSSTVNS+IGE+VV V+ FQ+E LRPVMVSR+ GGFT+NIIDTPGLVEAGYVN+QALELIKGFL+N+TIDVLLY DRLD YRVD+LD+Q++ A+T TFGK+IW K+LLVLTHAQ  P
Sbjct:    1 MGSLV-REWVGFQQFPAATQEKLIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYRVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSP 165          
BLAST of CX671676 vs. ExPASy Swiss-Prot
Match: TOC34_ARATH (Translocase of chloroplast 34, chloroplastic OS=Arabidopsis thaliana GN=TOC34 PE=1 SV=2)

HSP 1 Score: 241.506 bits (615), Expect = 3.350e-63
Identity = 115/161 (71.43%), Postives = 137/161 (85.09%), Query Frame = 2
Query:  167 LREWAGFQQFPSATQNKLIELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 649
            LREW G QQFP ATQ+KL+E+L K K+E+V++LT+LVMGKGGVGKSSTVNSVIGE+   V++FQSE LRP +VSR++ GFTLNIIDTPGL+E GYVN QA+ +IK FLLN TIDVLLY DRLD YRVDDLDRQ++ A+T  FGK+IW+KS LVLTHAQ  P
Sbjct:    7 LREWIGIQQFPPATQSKLLEILGKYKEEDVSSLTVLVMGKGGVGKSSTVNSVIGEKAAAVSTFQSEGLRPTLVSRTRSGFTLNIIDTPGLIEGGYVNDQAINIIKRFLLNMTIDVLLYVDRLDVYRVDDLDRQVVGAITDAFGKEIWKKSALVLTHAQFSP 167          
BLAST of CX671676 vs. ExPASy Swiss-Prot
Match: TOC34_PEA (Translocase of chloroplast 34 OS=Pisum sativum GN=TOC34 PE=1 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 6.984e-61
Identity = 113/161 (70.19%), Postives = 135/161 (83.85%), Query Frame = 2
Query:  167 LREWAGFQQFPSATQNKLIELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 649
            +REW+G   F  ATQ KL+ELL  LKQE+VN+LTILVMGKGGVGKSSTVNS+IGERVV+++ FQSE  RPVMVSRS+ GFTLNIIDTPGL+E GY+N  AL +IK FLL+KTIDVLLY DRLDAYRVD+LD+ + KA+T +FGK IW K+++ LTHAQ  P
Sbjct:    8 VREWSGINTFAPATQTKLLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSP 168          
BLAST of CX671676 vs. ExPASy Swiss-Prot
Match: TC159_ARATH (Translocase of chloroplast 159, chloroplastic OS=Arabidopsis thaliana GN=TOC159 PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.969e-19
Identity = 53/167 (31.74%), Postives = 90/167 (53.89%), Query Frame = 2
Query:  158 SLLLREWAGFQQFPSATQNKLIELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGY---VNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 649
            +LL    AG      A + K +E  ++  +E + +L ILV+GK GVGKS+T+NS++G ++ ++++F         +S +  G  +  IDTPGL  A      N + L  +K  +     D++LY DRLD    D  +  +++ +T + G  IW+ +++ LTHA   P
Sbjct:  821 ALLAGRQAGQLFSLDAAKKKAVESEAEGNEELIFSLNILVLGKAGVGKSATINSILGNQIASIDAFGLSTTSVREISGTVNGVKITFIDTPGLKSAAMDQSTNAKMLSSVKKVMKKCPPDIVLYVDRLDTQTRDLNNLPLLRTITASLGTSIWKNAIVTLTHAASAP 987          
BLAST of CX671676 vs. ExPASy Swiss-Prot
Match: TC120_ARATH (Translocase of chloroplast 120, chloroplastic OS=Arabidopsis thaliana GN=TOC120 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.629e-17
Identity = 62/221 (28.05%), Postives = 108/221 (48.87%), Query Frame = 2
Query:   26 AENTNTVKSDHPGEVR------R*RLYSLSLDATRRRNNIYANSPKKSMG---SLLLREWAGFQQFPSATQNKLIELLSKLKQENVN-TLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAG---YVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 649
            AE++ T ++D   E R      R +   LS    +  +N+        +G    L  R  +    F     + + E L    Q+ ++ + TI+V+GK GVGKS+T+NS+  E  ++ ++FQ    +   +     G  + +IDTPGL+ +    + N + L+ ++ F+     D++LY DRLD    D  D  +++ +T  FG  IW  +++ LTHA   P
Sbjct:  368 AEDSTTAETDEHDETREKLQFIRVKFLRLSHRLGQTPHNVVVAQVLYRLGLAEQLRGRNGSRVGAFSFDRASAMAEQLEAAAQDPLDFSCTIMVLGKSGVGKSATINSIFDELKISTDAFQVGTKKVQDIEGFVQGIKVRVIDTPGLLPSWSDQHKNEKILKSVRAFIKKSPPDIVLYLDRLDMQSRDSGDMPLLRTITDVFGPSIWFNAIVGLTHAASAP 588          
BLAST of CX671676 vs. ExPASy Swiss-Prot
Match: TC132_ARATH (Translocase of chloroplast 132, chloroplastic OS=Arabidopsis thaliana GN=TOC132 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.084e-17
Identity = 65/228 (28.51%), Postives = 108/228 (47.37%), Query Frame = 2
Query:    5 SRSKFCWAENTNTVKSDHPGEVR------R*RLYSLSLDATRRRNNIYANSPKKSMG---SLLLREWAGFQQFPSATQNKLIELLSKLKQENVN-TLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEA---GYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 649
            S ++F  AE++ T ++D   E R      R +   L+    +  +N+        +G    L  R  +    F     + + E L    Q+ ++ + TI+V+GK GVGKS+T+NS+  E     ++FQ    R   V     G  + +IDTPGL+ +      N + L  +K F+     D++LY DRLD    D  D  +++ ++  FG  IW  +++ LTHA   P
Sbjct:  479 SHNQFQQAEDSTTTEADEHDETREKLQLIRVKFLRLAHRLGQTPHNVVVAQVLYRLGLAEQLRGRNGSRVGAFSFDRASAMAEQLEAAGQDPLDFSCTIMVLGKSGVGKSATINSIFDEVKFCTDAFQMGTKRVQDVEGLVQGIKVRVIDTPGLLPSWSDQAKNEKILNSVKAFIKKNPPDIVLYLDRLDMQSRDSGDMPLLRTISDVFGPSIWFNAIVGLTHAASVP 706          
BLAST of CX671676 vs. ExPASy Swiss-Prot
Match: GTPA_DICDI (GTP-binding protein A OS=Dictyostelium discoideum GN=gtpA PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.240e-16
Identity = 54/146 (36.99%), Postives = 83/146 (56.85%), Query Frame = 2
Query:  206 TQNKLIELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAG--YVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHA 637
            T  +L E+L+ LK    N   +L++G+ GVGKSST+N+V G  +  V+S +S    P   SR   GF LNIIDTPG +++    V+   +  I+ +L  KTI  +L+ ++    R D   + +I   T   G Q+WR + +VLT+A
Sbjct:  134 TTEELQEMLAVLKGVQ-NECNVLLLGRTGVGKSSTLNTVFGIDI-PVHSSESCTQDPFTYSRVVNGFKLNIIDTPGFLDSQGELVDSNNMIKIQRYLSGKTIHCVLFVEKFTETRFDGAHQLVINQFTEKLGPQLWRNAAVVLTYA 277          
BLAST of CX671676 vs. ExPASy Swiss-Prot
Match: TOC90_ARATH (Translocase of chloroplast 90, chloroplastic OS=Arabidopsis thaliana GN=TOC90 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.406e-14
Identity = 46/130 (35.38%), Postives = 72/130 (55.38%), Query Frame = 2
Query:  260 TLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGL----VEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHA 637
            +L ILV+GK GVGKS+T+NS+ G+     ++F+    R   V  +  G  +  IDTPG       +   N + L  IK ++  +  DV+LY DRLD   +   D  +++ +T  FG  IW  ++LV+TH+
Sbjct:  166 SLRILVLGKTGVGKSATINSIFGQPKSETDAFRPGTDRIEEVMGTVSGVKVTFIDTPGFHPLSSSSTRKNRKILLSIKRYVKKRPPDVVLYLDRLDMIDMRYSDFSLLQLITEIFGAAIWLNTILVMTHS 295          
The following BLAST results are available for this feature:
BLAST of CX671676 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
TOC33_ARATH2.928e-6774.70Translocase of chloroplast 33, chloroplastic OS=Ar... [more]
TOC34_ARATH3.350e-6371.43Translocase of chloroplast 34, chloroplastic OS=Ar... [more]
TOC34_PEA6.984e-6170.19Translocase of chloroplast 34 OS=Pisum sativum GN=... [more]
TC159_ARATH2.969e-1931.74Translocase of chloroplast 159, chloroplastic OS=A... [more]
TC120_ARATH1.629e-1728.05Translocase of chloroplast 120, chloroplastic OS=A... [more]
TC132_ARATH8.084e-1728.51Translocase of chloroplast 132, chloroplastic OS=A... [more]
GTPA_DICDI5.240e-1636.99GTP-binding protein A OS=Dictyostelium discoideum ... [more]
TOC90_ARATH6.406e-1435.38Translocase of chloroplast 90, chloroplastic OS=Ar... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS10_12E02_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-12E02-J4-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671676 ID=CX671676; Name=CX671676; organism=Citrus sinensis; type=EST; length=710bp
ATTAAGTCGGTCGAAATTTTGCTGGGCGGAAAATACAAACACTGTAAAGT
CCGACCACCCAGGCGAGGTAAGAAGATAACGGCTTTACTCCCTCAGTTTG
GACGCAACTAGAAGAAGAAACAACATTTACGCAAACAGCCCGAAGAAATC
AATGGGGTCTCTTCTACTTCGTGAATGGGCGGGGTTTCAACAGTTTCCTT
CTGCAACTCAGAACAAATTGATCGAATTACTGTCCAAATTGAAGCAAGAG
AATGTAAACACGTTGACAATTCTTGTCATGGGCAAAGGTGGTGTTGGAAA
ATCTTCAACTGTGAATTCTGTTATCGGTGAACGAGTAGTCACTGTTAATT
CTTTCCAGTCCGAAGCGCTGAGACCAGTAATGGTTTCTCGTTCCAAAGGA
GGTTTCACATTGAACATCATTGATACTCCAGGCCTTGTAGAGGCTGGTTA
TGTTAATTACCAAGCTCTTGAGTTGATTAAAGGGTTTCTTTTGAATAAGA
CCATAGATGTTCTGCTATATGCTGACCGTTTGGATGCATATAGAGTAGAT
GACTTGGATAGACAAATTATTAAGGCTGTCACCGGAACTTTTGGCAAACA
AATATGGCGCAAAAGTTTACTTGTTCTCACTCATGCACAACTCTGCCCCT
CCTGATGGACTGAACTATGATGTTTACTGCTCTAAACGATCCGATGCTCT
TTTAAAGACT
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