CX671625

Overview
NameCX671625
Unique NameCX671625
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length891
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671625 vs. ExPASy Swiss-Prot
Match: GLUP_BACSU (Rhomboid protease gluP OS=Bacillus subtilis GN=gluP PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 1.434e-18
Identity = 41/136 (30.15%), Postives = 68/136 (50.00%), Query Frame = -1
Query:  295 HSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDVIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAACTGIIYGFLTCPIVQLSDASS 702
            H G+ H+A +  AL + G  V + YG   F LIY   GI+G++ SF+ +P P+ G +G +F  +GA L     N+ +  + +   +    I++    F +SN   +D   H+G    G+I GF     + L  A +
Sbjct:  232 HIGIAHLAFNTLALWSVGTAVERMYGSGRFLLIYLAAGITGSIASFVFSPYPSAGASGAIFGCLGALLYVALSNRKMFLRTIGTNIIVIIIINLGFGFAVSN---IDNSGHIG----GLIGGFFAAAALGLPKAGA 360          

HSP 2 Score: 38.891 bits (89), Expect = 1.434e-18
Identity = 21/45 (46.67%), Postives = 26/45 (57.78%), Query Frame = -3
Query:  722 FLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFL 856
            FL EI     N+E       + +GAK N LI  GEWWRL+TP+ L
Sbjct:  192 FLLEINGGSTNTE-----TLVAFGAKENSLIAQGEWWRLLTPIVL 231          
BLAST of CX671625 vs. ExPASy Swiss-Prot
Match: YDCA_BACSU (Putative rhomboid protease ydcA OS=Bacillus subtilis GN=ydcA PE=3 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 2.166e-11
Identity = 34/126 (26.98%), Postives = 61/126 (48.41%), Query Frame = -1
Query:  331 HSGLFHVALSCWALLTFGPQVCKSYGPFTFFLIYTLGGISGNLTSFLHTP--EPTVGGTGPVFAIIGAWLIYQFQNKDVIAKDVSERMFQKAILSTALSFIISNFGPVDTWAHLGAACTGIIYGFL 702
            H+G  H+  +  ++  F P + +  G   F L+Y   GI GN+ +++  P     VG +G +F + G +L       ++I ++ S+ +      +  +SFI SN   ++  AHL   C G +  FL
Sbjct:   68 HAGFTHLLFNSMSIFLFAPALERMLGKARFLLVYAGSGIIGNIGTYVTEPLDYVHVGASGAIFGLFGVYLFMVLFRNELIGQEHSKMIITLLAFAVLMSFINSN---INMMAHLFGLCGGFLLSFL 190          

HSP 2 Score: 28.8758 bits (63), Expect = 2.166e-11
Identity = 16/37 (43.24%), Postives = 22/37 (59.46%), Query Frame = -3
Query:  722 FFSLP----LLYGAKI---NELILVGEWWRLVTPMFL 811
            FFSLP    +L+   +   N  +  GEWWRL+TP+ L
Sbjct:   31 FFSLPAHSVVLWRDTVTGYNLGVANGEWWRLITPILL 67          
The following BLAST results are available for this feature:
BLAST of CX671625 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
GLUP_BACSU1.434e-1830.15Rhomboid protease gluP OS=Bacillus subtilis GN=glu... [more]
YDCA_BACSU2.166e-1126.98Putative rhomboid protease ydcA OS=Bacillus subtil... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS10_12B12_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-12B12-D24-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671625 ID=CX671625; Name=CX671625; organism=Citrus sinensis; type=EST; length=891bp
TGAAAGCAAAAATTTACTATGTACAAACTAATTTTTTTGCTCTAAACATA
CATATTTGTCTAGCTGCCATTCTACATAAAGATGTATAAAGCAAGACTCT
CATTTTGTTACATCCTGGTATTTATCTAATATCTAATGTTTCTGATTTCA
TCTTAATGCTAGTGTGTCGAGAGGAGGTTCAAAAACGAAAATAAAAGAGC
CTAAAATGATAACAAAGATGGTGAACACCATAAGCGATTTGCAAGGATTG
GCATATTGTCTAATCAGTGTTATTCCTTCTTCCTGACTATTTCTTGAAGA
AGCATCACTGAGTTGTACTATAGGACATGTCAAAAAGCCGTATATTATAC
CAGTACAAGCTGCTCCGAGGTGTGCCCACGTATCAACTGGCCCGAAATTG
CTTATTATGAAGCTTAGAGCCGTAGAAAGTATCGCCTTCTGGAACATTCT
CTCTGATACATCCTTGGCAATCACATCTTTGTTCTGGAACTGATAAATAA
GCCAAGCTCCAATTATGGCAAAAACAGGTCCCGTCCCACCAACAGTTGGC
TCTGGTGTATGAAGGAAGCTTGTCAAGTTGCCAGAAATTCCTCCAAGTGT
GTATATCAAGAAGAATGTAAATGGTCCATAGCTCTTACATACTTGAGGCC
CAAAAGTAAGAAGTGCCCAGCAACTAAGAGCTACGTGAAAAAGCCCCGAG
TGCCCATTGTCAATCTTGTACCAGAAACATTGGTGTCACTAGCCTCCACC
ACTCGCCAACGAGGATCAACTCGTTTATCTTTGCACCGTACAACAATGGG
AGTGAAAAAAACCCAAATTCAGAGTTCCTTATTGGGCTGGCAATCTCAAA
CAAAAAAACTGCAATATCTATAGAAACCAATATACTTATTA
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