CX671614

Overview
NameCX671614
Unique NameCX671614
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length833
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX671614_ssr440 microsatellite CX671614_ssr440:440..449. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig8068 contig Csv1_Contig8068:481..1317. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX671614 vs. ExPASy Swiss-Prot
Match: PBS1_ARATH (Serine/threonine-protein kinase PBS1 OS=Arabidopsis thaliana GN=PBS1 PE=1 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 9.746e-63
Identity = 125/162 (77.16%), Postives = 137/162 (84.57%), Query Frame = -1 
Query:  357 QNLVTWARPLFNDRRKFSKLADPRLEGRYPIRGLYQALAVASMCIQEQAATRPLIGDVVTALSYLANQTYDPNSHRGAGDKDDRRNRD--GAR-IFKNDEGGGSGRRWDLEGSEKEDSPRETARILNRDLERERAVAEAKMWGENLREKRRQSAQGSFDGTN 833
            QNLV WARPLFNDRRKF KLADPRL+GR+P R LYQALAVASMCIQEQAATRPLI DVVTALSYLANQ YDP+        D RRNRD  GAR I +ND+GGGSG ++DLEGSEKEDSPRETARILNRD+ RERAVAEAKMWGE+LREKRRQS QG+ +  +
Sbjct:  299 QNLVAWARPLFNDRRKFIKLADPRLKGRFPTRALYQALAVASMCIQEQAATRPLIADVVTALSYLANQAYDPSK------DDSRRNRDERGARLITRNDDGGGSGSKFDLEGSEKEDSPRETARILNRDINRERAVAEAKMWGESLREKRRQSEQGTSESNS 454
[Close]
BLAST of CX671614 vs. ExPASy Swiss-Prot
Match: RLCK7_ARATH (Probable serine/threonine-protein kinase RLCKVII OS=Arabidopsis thaliana GN=At1g07870 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 6.176e-25
Identity = 51/88 (57.95%), Postives = 67/88 (76.14%), Query Frame = -1 
Query:  570 QNLVTWARPLFNDRRKFSKLADPRLEGRYPIRGLYQALAVASMCIQEQAATRPLIGDVVTALSYLANQTYDPNSHRGAGDKDDRRNRD 833
            QNLV WARPLF DRR F K+ DP L+G+YP+RGLYQALA+++MC+QEQ   RP++ DVV AL++LA+  YDPNS   +  K+   +RD
Sbjct:  316 QNLVGWARPLFKDRRNFPKMVDPLLQGQYPVRGLYQALAISAMCVQEQPTMRPVVSDVVLALNFLASSKYDPNSPSSSSGKNPSFHRD 403
The following BLAST results are available for this feature:
BLAST of CX671614 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
PBS1_ARATH9.746e-6377.16Serine/threonine-protein kinase PBS1 OS=Arabidopsi... [more]
RLCK7_ARATH6.176e-2557.95Probable serine/threonine-protein kinase RLCKVII O... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS10_12B06_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-12B06-D12-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671614 ID=CX671614; Name=CX671614; organism=Citrus sinensis; type=EST; length=833bp
TTTTTTGACAGAATTTTTCAATTAGTTTGTAAATTGTATTGAAGAACAGT
ACAAGGTACAGATAACAGAACGTTTCGATTAAATGAAACTACATGAGGAA
GCAAGACGTGTTTACTCTCAAAATTTTATAAATACGTCTTGTTCTCCTTT
GGCTCTTCTAACAGACAATGTACACTCTTCATTTGTGCTTTTTCATAATC
ATCATCCTTTTTTTCTCCTATGCCCAGTGAAAGTAAAATAAAAAAAACTG
ATAAACAGAGAAAAAAGTTTAAAAGCATGTTGGCACCAAGTCCATTGTTG
TACATGTTGAAGCCAGAGGAGGAAAATGGTGCCTGGCATGGTCAATGGCA
CTATCCGTTAGTGCCATCAAAACTTCCTTGGGCACTTTGTCGTCTTTTTT
CTCTCAAGTTCTCTCCCCACATCTTGGCCTCGGCAACAGCTCTCTCTCTT
TCTAAATCCCGGTTCAATATCCTAGCAGTTTCTCTCGGGGAGTCCTCTTT
CTCAGACCCTTCTAAGTCCCACCTGCGTCCAGATCCTCCTCCCTCATCAT
TCTTAAATATCCTTGCTCCATCCCTGTTTCTTCTGTCATCCTTATCTCCA
GCACCTCTATGGCTATTAGGATCATAGGTCTGGTTTGCCAAATAAGAGAG
GGCAGTGACCACGTCTCCAATTAGAGGACGTGTGGCAGCCTGTTCTTGGA
TGCACATTGATGCCACAGCCAGCGCTTGGTAGAGACCCCTTATTGGATAC
CGCCCCTCAAGTCGTGGATCTGCTAGTTTTGAAAATTTTCTACGGTCATT
GAACAATGGACGTGCCCATGTGACAAGGTTCTG
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