CX671601

Overview
NameCX671601
Unique NameCX671601
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length780
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX671601_ssr84 microsatellite CX671601_ssr84:84..95. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5074 contig Csv1_Contig5074:1..783. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX671601 vs. ExPASy Swiss-Prot
Match: NUD19_ARATH (Nudix hydrolase 19, chloroplastic OS=Arabidopsis thaliana GN=NUDT19 PE=1 SV=1)

HSP 1 Score: 372.474 bits (955), Expect = 1.471e-102
Identity = 179/262 (68.32%), Postives = 211/262 (80.53%), Query Frame = 1
Query:    1 PTSALESLKTRLLDNTLHCQPQKHHXXXXXXXXXXPDFKVLPFRKGRPLTYSGPGE--TAPVWHLGWISLGDCKIFLANSGIELKEEALVYLGSRSADDVVYWAIDVSDGDSLASEFGSKQLCFVELRTLMVATDWADQRAMADLAIAGHARALLEWHNVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQ 780
            PTSA ESLKT +     H  P              PDFKVLPF KGRPL +S  G+  T P+WHLGW+SL DCK+ LA+ G++L E++LVYLG +  +D+VYWA+D+++ D   SE G ++LCFVELRTLMVA DWADQRAM +LAIAG+ARALLEWHNVS+FCG CG KT PKEAG+ KQCS+ +C+KR+YPRVDPVVIMLVIDRENDR LLSRQSR+VPRMWSC+AGFIEPGESLEEAVRRETWEETGIEVG+VVYH+SQ
Sbjct:   63 PTSAFESLKTLIPVIPNHSTPS-------------PDFKVLPFSKGRPLVFSSGGDANTTPIWHLGWVSLADCKVLLASCGVDLNEDSLVYLGPKLEEDLVYWAVDLAE-DGFVSELGGRKLCFVELRTLMVAADWADQRAMDELAIAGNARALLEWHNVSQFCGSCGSKTFPKEAGRRKQCSDETCRKRVYPRVDPVVIMLVIDRENDRALLSRQSRYVPRMWSCLAGFIEPGESLEEAVRRETWEETGIEVGDVVYHSSQ 310          
BLAST of CX671601 vs. ExPASy Swiss-Prot
Match: NUD12_MACFA (Peroxisomal NADH pyrophosphatase NUDT12 OS=Macaca fascicularis GN=NUDT12 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.900e-25
Identity = 73/191 (38.22%), Postives = 104/191 (54.45%), Query Frame = 1
Query:  238 IELKEEALVYLGS--RSADD--VVYWAIDVSDGDSLASEFGSKQLCFVELRTLMVATDWADQRAMADLAIAGHARALLEWHNVSRFCGHCGEKTIPKEAGKLKQCSNASCKK------RIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQ 780
            +E+K++ L Y G   R  +D  V ++A+ +      A EF  +      L   M A     ++   +  +   AR++L WH+  +FC  CG  T  +E G  + C    C          YPRVDPVVIM VI  +  R LL RQ RF P M++C+AGFIEPGE++E+AVRRE  EE+G++VG V Y + Q
Sbjct:  203 LEMKDKLLNYAGEVPREEEDGLVAWFALGIDP--IAAEEFKQRHENCYFLHPPMPALLQLKEK---EAGVVAQARSVLAWHSRYKFCPTCGNGTKIEEGGYKRVCLKEDCPSLNGVHNTSYPRVDPVVIMQVIHPDGTRCLLGRQKRFPPGMFTCLAGFIEPGETIEDAVRREVEEESGVKVGHVQYVSCQ 388          
BLAST of CX671601 vs. ExPASy Swiss-Prot
Match: NUD12_BOVIN (Peroxisomal NADH pyrophosphatase NUDT12 OS=Bos taurus GN=NUDT12 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.900e-25
Identity = 76/201 (37.81%), Postives = 107/201 (53.23%), Query Frame = 1
Query:  214 KIFLANSGIEL--KEEALVYLGSRSADD----VVYWAIDVSDGDSLASEFGSKQLCFVELRTLMVATDWADQRAMADLAIAGHARALLEWHNVSRFCGHCGEKTIPKEAGKLKQCSNASCKK------RIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQ 780
            KI L   G+EL  K+E   Y G  S ++    V ++A+ +      A EF  +      L   M A     ++   +  +   AR++L WH+  +FC  CG  T  +E G  + C    C          YPRVDPVVIM VI  +  + LL RQ RF P M++C+AGFIEPGE++E+AVRRE  EE+G++VG V Y + Q
Sbjct:  175 KITLIFLGVELEMKKEFFNYAGEISKEEEDGLVAWFALGIDT--VAAEEFKQRHENCYFLHPPMPALLQLKEK---EAGVVAQARSVLAWHSRYKFCPTCGNATKIEEGGYKRVCLKEDCPSLHGVHNTSYPRVDPVVIMQVIHPDGTKCLLGRQKRFPPGMFTCLAGFIEPGETIEDAVRREVEEESGVKVGHVQYVSCQ 370          
BLAST of CX671601 vs. ExPASy Swiss-Prot
Match: NPY1_SCHPO (Probable NADH pyrophosphatase OS=Schizosaccharomyces pombe GN=SPBC1778.03c PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.900e-25
Identity = 70/193 (36.27%), Postives = 103/193 (53.37%), Query Frame = 1
Query:  259 LVYLGSRSADDVV-------YWAIDVSDGDSLASEFGSKQLCFVELRTLMVATDWADQRAMADLAIAGHARALLEWHNVSRFCGHCGEKTIPKEAGKLKQCS--------NASCKKRI----YPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQ 780
            LVY+G+   +           +AID++  D L          FV LR++        Q + +D      AR++L+W +  RFC  CG++ IP   G    CS        N   KK I    YPR DP VIM+++  +   +LL R  R    +++C+AGF+EPGESLEEAV RET+EE+G++V +V+Y+ SQ
Sbjct:  103 LVYMGNEERNGPTDNWSQHNVFAIDITGIDELQQSIRDNGGTFVNLRSIFTEQY---QLSASDSGACAFARSILDWISRYRFCPGCGKRNIPTMGGTKLVCSDVLLNDDSNCPSKKGINNYQYPRTDPCVIMVILSHDMQHILLGRALRHPKGLYACLAGFLEPGESLEEAVVRETYEESGVDVEKVLYYASQ 292          
BLAST of CX671601 vs. ExPASy Swiss-Prot
Match: NUD12_HUMAN (Peroxisomal NADH pyrophosphatase NUDT12 OS=Homo sapiens GN=NUDT12 PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.241e-25
Identity = 77/201 (38.31%), Postives = 107/201 (53.23%), Query Frame = 1
Query:  214 KIFLANSGIEL--KEEALVYLGS--RSADD--VVYWAIDVSDGDSLASEFGSKQLCFVELRTLMVATDWADQRAMADLAIAGHARALLEWHNVSRFCGHCGEKTIPKEAGKLKQCSNASCKK------RIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQ 780
            KI L   G+EL  K++ L Y G   R  +D  V ++A+ +      A EF  +      L   M A     ++   +  +   AR++L WH+  +FC  CG  T  +E G  + C    C          YPRVDPVVIM VI  +  + LL RQ RF P M++C+AGFIEPGE++E+AVRRE  EE+G++VG V Y   Q
Sbjct:  193 KITLIFLGVELEIKDKLLNYAGEVPREEEDGLVAWFALGIDP--IAAEEFKQRHENCYFLHPPMPALLQLKEK---EAGVVAQARSVLAWHSRYKFCPTCGNATKIEEGGYKRLCLKEDCPSLNGVHNTSYPRVDPVVIMQVIHPDGTKCLLGRQKRFPPGMFTCLAGFIEPGETIEDAVRREVEEESGVKVGHVQYVACQ 388          
BLAST of CX671601 vs. ExPASy Swiss-Prot
Match: NUD12_MOUSE (Peroxisomal NADH pyrophosphatase NUDT12 OS=Mus musculus GN=Nudt12 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 7.219e-25
Identity = 57/125 (45.60%), Postives = 78/125 (62.40%), Query Frame = 1
Query:  424 DLAIAGHARALLEWHNVSRFCGHCGEKTIPKEAGKLKQCSNASCKK------RIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQ 780
            +  +   AR++L WH+  +FC  CG  T  +E G  + C   +C          YPRVDPVVIM VI  +  + LL RQ RF P M++C+AGFIEPGE++E+AVRRE  EE+G++VG V Y + Q
Sbjct:  264 EAGVVAQARSVLAWHSRYKFCPTCGSATKIEEGGYKRVCVRETCPSLQGVHNTSYPRVDPVVIMQVIHPDGTKCLLGRQKRFPPGMFTCLAGFIEPGETIEDAVRREVEEESGVKVGHVQYVSCQ 388          
BLAST of CX671601 vs. ExPASy Swiss-Prot
Match: NUD12_PONAB (Peroxisomal NADH pyrophosphatase NUDT12 OS=Pongo abelii GN=NUDT12 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.679e-24
Identity = 75/201 (37.31%), Postives = 106/201 (52.74%), Query Frame = 1
Query:  214 KIFLANSGIEL--KEEALVYLGS--RSADD--VVYWAIDVSDGDSLASEFGSKQLCFVELRTLMVATDWADQRAMADLAIAGHARALLEWHNVSRFCGHCGEKTIPKEAGKLKQCSNASCKK------RIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQ 780
            KI L   G+EL  K++   Y G   R  +D  V ++A+ +      A EF  +      L   M A     ++   +  +   AR++L W++  +FC  CG  T  +E G  + C    C          YPRVDPVVIM VI  +  + LL RQ RF P M++C+AGFIEPGE++E+AVRRE  EE+G++VG V Y   Q
Sbjct:  193 KITLIFLGVELEIKDKLFNYAGEVPREEEDGLVAWFALGIDP--IAAEEFKQRHENCYFLHPPMPALLQLKEK---EAGVVAQARSVLAWYSRYKFCPTCGNATKIEEGGYKRVCLKEDCPSLNGVHNTSYPRVDPVVIMQVIHPDGTKCLLGRQKRFPPGMFTCLAGFIEPGETIEDAVRREVEEESGVKVGHVQYVACQ 388          
BLAST of CX671601 vs. ExPASy Swiss-Prot
Match: NUDC_CHRVO (NADH pyrophosphatase OS=Chromobacterium violaceum GN=nudC PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.920e-19
Identity = 50/121 (41.32%), Postives = 69/121 (57.02%), Query Frame = 1
Query:  418 MADLAIAGHARALLEWHNVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQ 780
            MA +  A  A  L ++ +  RFCGHC            + C   SC +  YPR+ P +++LV  R    +LL+R   F P M+S +AGF+EPGE+LEE V RETWEE G++V  + Y  SQ
Sbjct:   84 MAQVQAAARAAQLRQFFHSHRFCGHCATPLAVSADQLGRHCP--SCGQVYYPRISPAMMVLV--RRGRELLLARSPHFAPGMYSALAGFVEPGETLEECVHRETWEEVGVKVKNLRYAFSQ 200          
BLAST of CX671601 vs. ExPASy Swiss-Prot
Match: NUD13_HUMAN (Nucleoside diphosphate-linked moiety X motif 13 OS=Homo sapiens GN=NUDT13 PE=2 SV=3)

HSP 1 Score: 92.0485 bits (227), Expect = 3.837e-18
Identity = 55/139 (39.57%), Postives = 77/139 (55.40%), Query Frame = 1
Query:  364 FVELRTLMVATDWADQRAMADLAIAGHARALLEWHNVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQ 780
            F+ELR  +       Q    D ++   A+ALL WH+  +FC   G+ T    AG  + C + +     YP++ PV I LV D    R LL+RQS F   M+S +AGF + GES+EE +RRE  EE G+EV  + Y+ SQ
Sbjct:  135 FIELRKALF------QLNARDASLLSTAQALLRWHDAHQFCSRSGQPTKKNVAGSKRVCPSNNII--YYPQMAPVAITLVSD--GTRCLLARQSSFPKGMYSALAGFCDIGESVEETIRREVAEEVGLEVESLQYYASQ 263          
BLAST of CX671601 vs. ExPASy Swiss-Prot
Match: NUDC_PSEAE (NADH pyrophosphatase OS=Pseudomonas aeruginosa GN=nudC PE=3 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 8.548e-18
Identity = 55/141 (39.01%), Postives = 80/141 (56.74%), Query Frame = 1
Query:  358 LCFVELRTLMVATDWADQRAMADLAIAGHARALLEWHNVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQ 780
            + +  LR  M+  D+ DQ  M      G+A  +  W   +RFCG+CG +   ++  ++ QC    C    YPR+ P +I+LV     D VLL+R  RFVP ++S +AGF+E GES+E+ V RE  EE G+EV  + Y  SQ
Sbjct:   78 MAWAPLRQFMLHGDF-DQFCML-----GYASQIGIWARHNRFCGNCGTRMQAQDHERVMQCPQ--CGLHQYPRLSPSMIVLVT--RGDEVLLARSPRFVPGVYSTLAGFVEAGESVEQCVVREVREEVGVEVANLEYIGSQ 208          
The following BLAST results are available for this feature:
BLAST of CX671601 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 105
Match NameE-valueIdentityDescription
NUD19_ARATH1.471e-10268.32Nudix hydrolase 19, chloroplastic OS=Arabidopsis t... [more]
NUD12_MACFA1.900e-2538.22Peroxisomal NADH pyrophosphatase NUDT12 OS=Macaca ... [more]
NUD12_BOVIN1.900e-2537.81Peroxisomal NADH pyrophosphatase NUDT12 OS=Bos tau... [more]
NPY1_SCHPO1.900e-2536.27Probable NADH pyrophosphatase OS=Schizosaccharomyc... [more]
NUD12_HUMAN3.241e-2538.31Peroxisomal NADH pyrophosphatase NUDT12 OS=Homo sa... [more]
NUD12_MOUSE7.219e-2545.60Peroxisomal NADH pyrophosphatase NUDT12 OS=Mus mus... [more]
NUD12_PONAB4.679e-2437.31Peroxisomal NADH pyrophosphatase NUDT12 OS=Pongo a... [more]
NUDC_CHRVO5.920e-1941.32NADH pyrophosphatase OS=Chromobacterium violaceum ... [more]
NUD13_HUMAN3.837e-1839.57Nucleoside diphosphate-linked moiety X motif 13 OS... [more]
NUDC_PSEAE8.548e-1839.01NADH pyrophosphatase OS=Pseudomonas aeruginosa GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_12A11_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-12A11-B22-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671601 ID=CX671601; Name=CX671601; organism=Citrus sinensis; type=EST; length=780bp
CCAACTTCGGCTCTTGAATCACTCAAAACAAGACTTTTAGACAATACCCT
TCACTGCCAACCACAAAAACACCATTCATCATTATCATCATCATCTTCTT
CTTCTCCTGATTTCAAGGTCTTGCCTTTCAGAAAGGGCAGGCCTTTGACT
TATTCTGGCCCTGGTGAGACGGCGCCGGTTTGGCATCTGGGTTGGATCAG
TTTGGGTGATTGCAAGATTTTCTTGGCGAATTCTGGGATTGAGTTGAAGG
AAGAGGCTTTGGTTTATCTGGGTTCTCGGTCTGCGGATGATGTGGTTTAT
TGGGCAATTGATGTGTCTGACGGGGATAGCTTGGCTTCTGAATTCGGTAG
TAAACAATTATGCTTTGTGGAGCTGAGGACGCTTATGGTGGCTACTGATT
GGGCTGATCAGCGGGCTATGGCTGATTTGGCTATTGCCGGTCATGCCAGG
GCATTACTAGAGTGGCATAATGTATCACGGTTTTGTGGACATTGTGGGGA
AAAAACAATCCCTAAGGAAGCTGGGAAACTGAAGCAGTGCTCAAATGCAT
CGTGCAAAAAGAGGATATACCCTCGTGTTGATCCAGTGGTCATTATGTTG
GTCATTGACAGAGAGAATGATCGTGTACTTTTAAGCAGACAATCAAGATT
TGTCCCACGAATGTGGAGCTGCATAGCTGGTTTTATAGAGCCTGGAGAAA
GCTTAGAAGAAGCAGTGAGGAGAGAAACATGGGAAGAGACTGGCATTGAA
GTTGGGGAAGTTGTCTATCATACTTCTCAA
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