CX043366

Overview
NameCX043366
Unique NameCX043366
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length801
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3567 contig Csv1_Contig3567:1..769. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX043366 vs. ExPASy Swiss-Prot
Match: RL35_EUPES (60S ribosomal protein L35 OS=Euphorbia esula GN=RPL35 PE=2 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.674e-48
Identity = 103/123 (83.74%), Postives = 106/123 (86.18%), Query Frame = -1 
Query:  283 MARIKVHELRQKSKVDXXXXXXXXXXXXXXLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAIKV 651
            MARIKVHELRQK+K +              LRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQK ALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQ SLKTEREKK+EMYFPMRKYAIKV
Sbjct:    1 MARIKVHELRQKTKAELLNQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKLALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQQSLKTEREKKKEMYFPMRKYAIKV 123
[Close]
BLAST of CX043366 vs. ExPASy Swiss-Prot
Match: RL352_ARATH (60S ribosomal protein L35-2 OS=Arabidopsis thaliana GN=RPL35B PE=2 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 6.362e-48
Identity = 102/123 (82.93%), Postives = 106/123 (86.18%), Query Frame = -1 
Query:  283 MARIKVHELRQKSKVDXXXXXXXXXXXXXXLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAIKV 651
            MARIKVHELR+KSK D              LRVAKVTGGAPNKLSKIKVVR SIAQVLTVISQKQK+ALREAYKNKK LPLDLRPKKTRAIRRRLTKHQASLKTEREKK+EMYFP+RKYAIKV
Sbjct:    1 MARIKVHELREKSKADLSGQLKEFKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTVISQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYFPIRKYAIKV 123
[Close]
BLAST of CX043366 vs. ExPASy Swiss-Prot
Match: RL354_ARATH (60S ribosomal protein L35-4 OS=Arabidopsis thaliana GN=RPL35D PE=2 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 1.085e-47
Identity = 102/123 (82.93%), Postives = 105/123 (85.37%), Query Frame = -1 
Query:  283 MARIKVHELRQKSKVDXXXXXXXXXXXXXXLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAIKV 651
            MARIKVHELR KSK D              LRVAKVTGGAPNKLSKIKVVR SIAQVLTVISQKQK+ALREAYKNKK LPLDLRPKKTRAIRRRLTKHQASLKTEREKK+EMYFP+RKYAIKV
Sbjct:    1 MARIKVHELRDKSKTDLQNQLKEFKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTVISQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYFPVRKYAIKV 123
[Close]
BLAST of CX043366 vs. ExPASy Swiss-Prot
Match: RL351_ARATH (60S ribosomal protein L35-1 OS=Arabidopsis thaliana GN=RPL35A PE=1 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 5.386e-47
Identity = 101/123 (82.11%), Postives = 105/123 (85.37%), Query Frame = -1 
Query:  283 MARIKVHELRQKSKVDXXXXXXXXXXXXXXLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAIKV 651
            MARIKVHELR+KSK D              LRVAKVTGGAPNKLSKIKVVR SIAQVLTV SQKQK+ALREAYKNKK LPLDLRPKKTRAIRRRLTKHQASLKTEREKK+EMYFP+RKYAIKV
Sbjct:    1 MARIKVHELREKSKSDLQNQLKELKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTVSSQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYFPIRKYAIKV 123
[Close]
BLAST of CX043366 vs. ExPASy Swiss-Prot
Match: RL353_ARATH (60S ribosomal protein L35-3 OS=Arabidopsis thaliana GN=RPL35C PE=1 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 2.047e-46
Identity = 100/123 (81.30%), Postives = 104/123 (84.55%), Query Frame = -1 
Query:  283 MARIKVHELRQKSKVDXXXXXXXXXXXXXXLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAIKV 651
            MARIKVHELR KSK D              LRVAKVTGGAPNKLSKIKVVR SIAQVLTV SQKQK+ALREAYKNKK LPLDLRPKKTRAIRRRLTKHQASLKTEREKK++MYFP+RKYAIKV
Sbjct:    1 MARIKVHELRDKSKSDLSTQLKELKAELASLRVAKVTGGAPNKLSKIKVVRKSIAQVLTVSSQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKDMYFPIRKYAIKV 123
[Close]
BLAST of CX043366 vs. ExPASy Swiss-Prot
Match: RL35_RAT (60S ribosomal protein L35 OS=Rattus norvegicus GN=Rpl35 PE=1 SV=3)

HSP 1 Score: 136.732 bits (343), Expect = 1.424e-31
Identity = 71/122 (58.20%), Postives = 91/122 (74.59%), Query Frame = -1 
Query:  286 MARIKVHELRQKSKVDXXXXXXXXXXXXXXLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAIK 651
            MA+IK  +LR K K +              LRVAKVTGGA +KLSKI+VVR SIA+VLTVI+Q QK  LR+ YK KK+ PLDLRPKKTRA+RRRLTKH+  LKT++++++E  +P+RKYA+K
Sbjct:    1 MAKIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVINQTQKENLRKFYKGKKYKPLDLRPKKTRAMRRRLTKHEEKLKTKKQQRKERLYPLRKYAVK 122
[Close]
BLAST of CX043366 vs. ExPASy Swiss-Prot
Match: RL35_MOUSE (60S ribosomal protein L35 OS=Mus musculus GN=Rpl35 PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.424e-31
Identity = 71/122 (58.20%), Postives = 91/122 (74.59%), Query Frame = -1 
Query:  286 MARIKVHELRQKSKVDXXXXXXXXXXXXXXLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAIK 651
            MA+IK  +LR K K +              LRVAKVTGGA +KLSKI+VVR SIA+VLTVI+Q QK  LR+ YK KK+ PLDLRPKKTRA+RRRLTKH+  LKT++++++E  +P+RKYA+K
Sbjct:    1 MAKIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVINQTQKENLRKFYKGKKYKPLDLRPKKTRAMRRRLTKHEEKLKTKKQQRKERLYPLRKYAVK 122
[Close]
BLAST of CX043366 vs. ExPASy Swiss-Prot
Match: RL35_HUMAN (60S ribosomal protein L35 OS=Homo sapiens GN=RPL35 PE=1 SV=2)

HSP 1 Score: 135.191 bits (339), Expect = 4.143e-31
Identity = 70/122 (57.38%), Postives = 91/122 (74.59%), Query Frame = -1 
Query:  286 MARIKVHELRQKSKVDXXXXXXXXXXXXXXLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAIK 651
            MA+IK  +LR K K +              LRVAKVTGGA +KLSKI+VVR SIA+VLTVI+Q QK  LR+ YK KK+ PLDLRPKKTRA+RRRL KH+ +LKT++++++E  +P+RKYA+K
Sbjct:    1 MAKIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVINQTQKENLRKFYKGKKYKPLDLRPKKTRAMRRRLNKHEENLKTKKQQRKERLYPLRKYAVK 122
[Close]
BLAST of CX043366 vs. ExPASy Swiss-Prot
Match: RL35_CHICK (60S ribosomal protein L35 OS=Gallus gallus GN=RPL35 PE=2 SV=3)

HSP 1 Score: 135.191 bits (339), Expect = 4.143e-31
Identity = 71/122 (58.20%), Postives = 91/122 (74.59%), Query Frame = -1 
Query:  286 MARIKVHELRQKSKVDXXXXXXXXXXXXXXLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAIK 651
            MA+IK  +LR K K +              LRVAKVTGGA +KLSKI+VVR SIA+VLTVI+Q QK  LR+ YK KK+ PLDLRPKKTRA+RRRL KH+ +LKT++++++E  +P+RKYAIK
Sbjct:    1 MAKIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVINQTQKENLRKFYKGKKYKPLDLRPKKTRAMRRRLNKHEENLKTKKQQRKERLYPVRKYAIK 122
[Close]
BLAST of CX043366 vs. ExPASy Swiss-Prot
Match: RL35_BOVIN (60S ribosomal protein L35 OS=Bos taurus GN=RPL35 PE=2 SV=3)

HSP 1 Score: 135.191 bits (339), Expect = 4.143e-31
Identity = 70/122 (57.38%), Postives = 91/122 (74.59%), Query Frame = -1 
Query:  286 MARIKVHELRQKSKVDXXXXXXXXXXXXXXLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAIK 651
            MA+IK  +LR K K +              LRVAKVTGGA +KLSKI+VVR SIA+VLTVI+Q QK  LR+ YK KK+ PLDLRPKKTRA+RRRL KH+ +LKT++++++E  +P+RKYA+K
Sbjct:    1 MAKIKARDLRGKKKEELLKQLEDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVINQTQKENLRKFYKGKKYKPLDLRPKKTRAMRRRLNKHEENLKTKKQQRKERLYPLRKYAVK 122
The following BLAST results are available for this feature:
BLAST of CX043366 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
RL35_EUPES1.674e-4883.7460S ribosomal protein L35 OS=Euphorbia esula GN=RP... [more]
RL352_ARATH6.362e-4882.9360S ribosomal protein L35-2 OS=Arabidopsis thalian... [more]
RL354_ARATH1.085e-4782.9360S ribosomal protein L35-4 OS=Arabidopsis thalian... [more]
RL351_ARATH5.386e-4782.1160S ribosomal protein L35-1 OS=Arabidopsis thalian... [more]
RL353_ARATH2.047e-4681.3060S ribosomal protein L35-3 OS=Arabidopsis thalian... [more]
RL35_RAT1.424e-3158.2060S ribosomal protein L35 OS=Rattus norvegicus GN=... [more]
RL35_MOUSE1.424e-3158.2060S ribosomal protein L35 OS=Mus musculus GN=Rpl35... [more]
RL35_HUMAN4.143e-3157.3860S ribosomal protein L35 OS=Homo sapiens GN=RPL35... [more]
RL35_CHICK4.143e-3158.2060S ribosomal protein L35 OS=Gallus gallus GN=RPL3... [more]
RL35_BOVIN4.143e-3157.3860S ribosomal protein L35 OS=Bos taurus GN=RPL35 P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_10F02_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-10F02-L4-1-7.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043366 ID=CX043366; Name=CX043366; organism=Citrus sinensis; type=EST; length=801bp
TTTTTTTTTTTTTTTTTAAAACAAAGAATTTACCAACAAATGTAGATAAA
TAAGAACACTCAAGAACAGAAATCCTATCTTGACTGCTATTCCATCACAA
TCTAGCACATCTTGTTTAGGTTGAGATGCACCCTTCAAGTTTTACACACA
TAAGATTGAACAAAAGCAAATTTAAGTGAACAAAAATGATATTTGAAAAG
GTAACAAAAGTAAAAATTTGTCAACAAAATAGGTTCGTAACTGCAAGATA
CCAAGATACTCCTAGAAAAAGATTCTAGCCTACACCTTAATGGCGTACTT
CCTCATGGGAAAGTACATCTCCCTCTTCTTCTCCCGCTCGGTCTTCAGTG
AAGCCTGGTGCTTGGTAAGCCTTCTCCTGATAGCCCGGGTCTTCTTGGGA
CGCAGATCAAGGGGCAAGAACTTCTTATTCTTGTATGCCTCCCTCAATGC
AGCCTTCTGCTTTTGTGAAATGACAGTCAACACTTGTGCGATCGATAACC
TCACCACCTTGATCTTGGATAGCTTGTTAGGGGCACCGCCGGTGACCTTA
GCAACGCGAAGGAGGGCGAGCTCAGCCTTGAGTTCCTTCAACTGGTTCAA
AAGATCCACCTTCGATTTCTGCCTCAGCTCATGCACCTTGATCCTAGCCA
TTGCTACGTTTGGTGTCTCTGCTCCTGCAACGGCGGCTTCCTCTGCTTTT
TTTACGACGACGGGACTATGCATCCCATAAATCAGTATGTCTAATCAAAT
GAAATTTGTCCCAACAATGATGATCCAAAGAAGCAGAGGGAACTGAAGGT
T
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