EY680240

Overview
NameEY680240
Unique NameEY680240
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length856
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY680240 vs. ExPASy Swiss-Prot
Match: RH38_ARATH (DEAD-box ATP-dependent RNA helicase 38 OS=Arabidopsis thaliana GN=RH38 PE=2 SV=2)

HSP 1 Score: 305.834 bits (782), Expect = 1.962e-82
Identity = 163/246 (66.26%), Postives = 192/246 (78.05%), Query Frame = 2
Query:    2 DLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKR-PPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIC*RL*STFCQEKRVVI*NQ*SSIKFYCPDELAKVMVIRGKIFGTG 736
            DLNLSPEL+KGLYVEMKF+KPSKIQAISLPMI+TPP+++LIAQA NGSGKTTCFVLGMLSRVDP L+ PQALCICPTRELA QN+EVL+KMGK TGIT+E AVP DST   P + R  PV+A VVIGTPGT+KKWM+ K+LG + LKILV+DEADHML   GFRDDSL+IMKDI R + + QVLLFSATFNETVK+FV R        F + + + + +     K  CP E  K+ VI+ +I   G
Sbjct:   95 DLNLSPELMKGLYVEMKFEKPSKIQAISLPMIMTPPHKHLIAQAHNGSGKTTCFVLGMLSRVDPTLREPQALCICPTRELANQNMEVLQKMGKFTGITAELAVP-DSTRGAPAATRGAPVSAHVVIGTPGTLKKWMAFKRLGLNHLKILVFDEADHMLATDGFRDDSLKIMKDIGRVNPNFQVLLFSATFNETVKDFVARTVKDPNQLFVKREDLAL-DSVKQYKVVCPKEQNKIEVIKDQIMELG 338          
BLAST of EY680240 vs. ExPASy Swiss-Prot
Match: RH38_ORYSJ (DEAD-box ATP-dependent RNA helicase 38 OS=Oryza sativa subsp. japonica GN=Os03g0158200 PE=3 SV=1)

HSP 1 Score: 303.523 bits (776), Expect = 9.738e-82
Identity = 156/249 (62.65%), Postives = 190/249 (76.31%), Query Frame = 2
Query:    2 DLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIC*RL*STFCQEKRVVI*NQ*SSIKFYCPDELAKVMVIRGKIFGTGKKKG 748
            DL L+PELLKGL+ EM F +PSKIQA++LPMILTPPY++LIAQA NGSGKTTCFVLGMLSRVDPN K  QA+CICPTRELA QN  VL +MGK TGIT  CA+P    +YVPI+K P +T QVVIGT GT+ KW++ KK+  + +KILV+DEADHML E GFR DS RIM+DI+RS+G CQVLLFSATFNE VK+FVTR+       F +++ + +  +    K   PDE AK+ VI+ KIF  G+K G
Sbjct:  104 DLKLTPELLKGLHDEMGFSRPSKIQAVTLPMILTPPYKDLIAQAHNGSGKTTCFVLGMLSRVDPNRKVTQAICICPTRELAQQNKSVLMRMGKFTGITCACAIPPAQKDYVPIAKMPKITDQVVIGTSGTLMKWINHKKILTNDIKILVFDEADHMLAEDGFRSDSERIMRDIQRSAGGCQVLLFSATFNERVKDFVTRVIKDGNQIFVKKEELTL-EKVKQYKVQVPDERAKIAVIKDKIFEFGQKVG 351          
BLAST of EY680240 vs. ExPASy Swiss-Prot
Match: DBP5_KLULA (ATP-dependent RNA helicase DBP5 OS=Kluyveromyces lactis GN=DBP5 PE=3 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 5.581e-45
Identity = 93/200 (46.50%), Postives = 135/200 (67.50%), Query Frame = 2
Query:    2 DLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRI 601
            +L LS ELLKGLY  MKFQKPSKIQ  +LP+++  P  N+IAQ+++G+GKT  F L ML+RVDPN+ + QA+C+ P RELA Q LEV+++MGK T  +S+  VP          +  P+TA +V+GTPGT+   +  K L    +K+ V DEAD+MLD+ G  D  +R+ K + ++   CQ++LFSATF++ V+ +  +I
Sbjct:   83 ELGLSEELLKGLYA-MKFQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRVDPNVNSTQAICLSPARELARQTLEVIQEMGKFTKTSSQLVVPDS------FERNKPITANIVVGTPGTVLDLIRRKMLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKT---CQLVLFSATFDDGVRQYAKKI 272          
BLAST of EY680240 vs. ExPASy Swiss-Prot
Match: DBP5_CANAL (ATP-dependent RNA helicase DBP5 OS=Candida albicans GN=DBP5 PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.624e-44
Identity = 98/200 (49.00%), Postives = 134/200 (67.00%), Query Frame = 2
Query:    2 DLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRI 601
            +L LSPELLKGLY  MKF KPSKIQ  +LP++L+ P RN+I Q+++G+GKT  F L MLSRVDP +K PQ LC+ PTRELA Q LEV+  MGK T IT++  VP    N +P  +   V AQV++GTPG     +  ++L  S++K+ V DEAD+ML+  G  D ++R+ K + R     Q++LFSATF   V+ +  R+
Sbjct:  154 ELGLSPELLKGLYA-MKFNKPSKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFSLTMLSRVDPTIKMPQCLCLSPTRELARQTLEVITTMGKFTNITTQLVVP----NAIP--RGSSVNAQVLVGTPGIAIDLIRRRQLNLSKMKVFVLDEADNMLEAQGLGDQAIRVKKALPRG---VQLVLFSATFPTEVREYAERL 343          
BLAST of EY680240 vs. ExPASy Swiss-Prot
Match: DBP5_YEAST (ATP-dependent RNA helicase DBP5 OS=Saccharomyces cerevisiae GN=DBP5 PE=1 SV=2)

HSP 1 Score: 179.104 bits (453), Expect = 2.770e-44
Identity = 94/200 (47.00%), Postives = 136/200 (68.00%), Query Frame = 2
Query:    2 DLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRI 601
            +L L+PELLKG+Y  MKFQKPSKIQ  +LP++L  P RN+IAQ+++G+GKT  F L ML+RV+P   +PQA+C+ P+RELA Q LEV+++MGK T ITS+  VP          K   + AQV++GTPGT+   M  K +   ++KI V DEAD+MLD+ G  D  +R+ + + + +   Q++LFSATF + V+ +  +I
Sbjct:   96 ELGLAPELLKGIYA-MKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDS------FEKNKQINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLPKDT---QLVLFSATFADAVRQYAKKI 285          
BLAST of EY680240 vs. ExPASy Swiss-Prot
Match: DBP5_YEAS7 (ATP-dependent RNA helicase DBP5 OS=Saccharomyces cerevisiae (strain YJM789) GN=DBP5 PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.770e-44
Identity = 94/200 (47.00%), Postives = 136/200 (68.00%), Query Frame = 2
Query:    2 DLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRI 601
            +L L+PELLKG+Y  MKFQKPSKIQ  +LP++L  P RN+IAQ+++G+GKT  F L ML+RV+P   +PQA+C+ P+RELA Q LEV+++MGK T ITS+  VP          K   + AQV++GTPGT+   M  K +   ++KI V DEAD+MLD+ G  D  +R+ + + + +   Q++LFSATF + V+ +  +I
Sbjct:   96 ELGLAPELLKGIYA-MKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDS------FEKNKQINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLPKDT---QLVLFSATFADAVRQYAKKI 285          
BLAST of EY680240 vs. ExPASy Swiss-Prot
Match: DBP5_CANGA (ATP-dependent RNA helicase DBP5 OS=Candida glabrata GN=DBP5 PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 3.618e-44
Identity = 95/200 (47.50%), Postives = 134/200 (67.00%), Query Frame = 2
Query:    2 DLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRI 601
            +L LSPELLKG+Y  MKFQKPSKIQ  +LP++L+ P RN+IAQ+++G+GKT  F L MLSRVD     PQA+C+ P+RELA Q LEV+++MGK+T IT++  VP          K   + A VV+GTPGT+   +  K +    +KI V DEAD+MLD+ G  D  +R+ K + + +   Q++LFSATF + VK +  ++
Sbjct:  118 ELGLSPELLKGIYA-MKFQKPSKIQERALPLLLSNPPRNMIAQSQSGTGKTAAFSLTMLSRVDETQNVPQAICLAPSRELARQTLEVIQEMGKYTKITTQLIVPDS------FEKNTKINANVVVGTPGTLLDLIRRKLIQLQNVKIFVLDEADNMLDKQGLGDQCIRVKKFLPKDT---QLVLFSATFADAVKAYAQKV 307          
BLAST of EY680240 vs. ExPASy Swiss-Prot
Match: DBP5_LODEL (ATP-dependent RNA helicase DBP5 OS=Lodderomyces elongisporus GN=DBP5 PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 1.053e-43
Identity = 91/199 (45.73%), Postives = 133/199 (66.83%), Query Frame = 2
Query:    2 DLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTR 598
            +L L PELLKGLY  MKF KPSKIQ  +LP++++ P +N+I Q+++G+GKT  F L MLSRVD ++KAPQ +C+ PTRELA Q LEV+  MGK++ IT +  VP        + +   ++AQV++GTPG +   ++ K +  +++K+ V DEAD+MLD  G  D  LR+ K + R    CQ++LFSATF   V+ +  +
Sbjct:  120 ELGLKPELLKGLYA-MKFNKPSKIQERALPLLISNPPKNMIGQSQSGTGKTAAFSLTMLSRVDESIKAPQCICLAPTRELARQTLEVVETMGKYSNITYQLVVPDS------VPRGQAISAQVLVGTPGIVHDLINRKAINVAKVKVFVLDEADNMLDAQGLADTCLRVKKRLPRD---CQLVLFSATFPTEVRKYAEK 308          
BLAST of EY680240 vs. ExPASy Swiss-Prot
Match: DBP5_SCHPO (ATP-dependent RNA helicase dbp5 OS=Schizosaccharomyces pombe GN=dbp5 PE=1 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 2.593e-42
Identity = 91/199 (45.73%), Postives = 134/199 (67.34%), Query Frame = 2
Query:    2 DLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTR 598
            +L L PELLKG+Y  MKFQKPSKIQ  +LP++L+ P RN+I Q+++G+GKT  F L MLSRVD ++  PQA+C+ P+RELA Q ++V+ +MGK+T + +   +         + K   + AQ+VIGTPGT+   M  ++L    +K+ V DEAD+MLD+ G  D S+RI   + R++   Q++LFSATF+E V+ +  R
Sbjct:  118 ELELKPELLKGIY-SMKFQKPSKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMGKYTEVKTAFGIKDS------VPKGAKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNT---QIVLFSATFSERVEKYAER 306          
BLAST of EY680240 vs. ExPASy Swiss-Prot
Match: DBP5_ASHGO (ATP-dependent RNA helicase DBP5 OS=Ashbya gossypii GN=DBP5 PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 1.287e-41
Identity = 103/240 (42.92%), Postives = 147/240 (61.25%), Query Frame = 2
Query:    2 DLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIC*RL*STFCQEKRVVI*NQ*SSIK---FYCPDELAKVMVI 712
            +L L+PELLKGLY  MKFQKPSKIQ  +LP++L  P RN+IAQ+++G+GKT  F L MLSRVD  + A QA+C+ P+R LA Q LEV+++MGK T I S+  VP          K   + A +++GTPGT+   M  K +   ++K  V DEAD+MLD+ G  D  +R+ K + + +   Q++LFSATF+++V+ +  R+     S   Q   V +    S+IK     C DE  K  V+
Sbjct:   83 ELGLAPELLKGLYA-MKFQKPSKIQERALPLLLYNPPRNMIAQSQSGTGKTAAFSLTMLSRVDVAVPATQAICLAPSR-LARQTLEVIQEMGKFTKIASQLIVPDS------YEKNKAINAHIIVGTPGTVLDLMRRKMIQLGKVKTFVLDEADNMLDKQGLGDQCIRVKKFLPKDT---QLVLFSATFDDSVREYARRVVPNANSLELQRNEVNV----SAIKQLFMDCNDERHKFTVL 307          
The following BLAST results are available for this feature:
BLAST of EY680240 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RH38_ARATH1.962e-8266.26DEAD-box ATP-dependent RNA helicase 38 OS=Arabidop... [more]
RH38_ORYSJ9.738e-8262.65DEAD-box ATP-dependent RNA helicase 38 OS=Oryza sa... [more]
DBP5_KLULA5.581e-4546.50ATP-dependent RNA helicase DBP5 OS=Kluyveromyces l... [more]
DBP5_CANAL1.624e-4449.00ATP-dependent RNA helicase DBP5 OS=Candida albican... [more]
DBP5_YEAST2.770e-4447.00ATP-dependent RNA helicase DBP5 OS=Saccharomyces c... [more]
DBP5_YEAS72.770e-4447.00ATP-dependent RNA helicase DBP5 OS=Saccharomyces c... [more]
DBP5_CANGA3.618e-4447.50ATP-dependent RNA helicase DBP5 OS=Candida glabrat... [more]
DBP5_LODEL1.053e-4345.73ATP-dependent RNA helicase DBP5 OS=Lodderomyces el... [more]
DBP5_SCHPO2.593e-4245.73ATP-dependent RNA helicase dbp5 OS=Schizosaccharom... [more]
DBP5_ASHGO1.287e-4142.92ATP-dependent RNA helicase DBP5 OS=Ashbya gossypii... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-008-H09-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY680240 ID=EY680240; Name=EY680240; organism=Citrus sinensis; type=EST; length=856bp
AGATTTGAATCTCTCACCAGAGCTCCTAAAGGGATTATACGTGGAAATGA
AATTCCAGAAGCCTAGCAAGATTCAAGCCATCAGTTTGCCTATGATCTTG
ACTCCTCCCTACAGAAATTTGATTGCTCAGGCACGTAATGGTTCTGGCAA
GACGACTTGTTTTGTGCTTGGGATGTTGAGCCGTGTTGATCCAAACCTCA
AGGCTCCACAAGCACTTTGCATTTGTCCTACCAGAGAATTGGCAATTCAG
AATTTGGAGGTTCTTCGTAAGATGGGGAAGCACACAGGGATAACTTCAGA
ATGTGCTGTGCCAACAGACAGCACCAATTATGTGCCAATATCAAAAAGGC
CACCAGTTACAGCACAAGTAGTGATTGGCACTCCTGGTACCATTAAGAAA
TGGATGTCAGCAAAGAAATTGGGTTTCAGTCGTTTGAAAATTCTTGTGTA
TGATGAGGCCGATCACATGCTTGATGAGGCTGGCTTTAGAGATGATTCTT
TGAGGATTATGAAGGACATTGAAAGAAGCAGTGGTCATTGCCAGGTTCTT
CTATTTTCAGCCACATTCAACGAAACTGTCAAGAATTTTGTAACAAGGAT
TTGTTAAAGATTATAATCAACTTTTTGTCAAGAAAAAAGAGTTGTCATTT
AAAATCAGTAAAGCAGTATAAAGTTTTACTGTCCCGACGAACTTGCCAAG
GTTATGGTAATCAGGGGAAAAATTTTTGGAACTGGGAAAAAAAAAGGGGC
AAAAAATTATATTTTTGCCCCACAAAAAAAATTGGAAAGCGCCTTGCCAA
AAACCCTTTAAAAAATTTGGGTTAAAAAAGCCCCAAAAATTTAGGGGGGG
CCAAAA
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