CX671586

Overview
NameCX671586
Unique NameCX671586
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length828
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX671586_ssr5 microsatellite CX671586_ssr5:5..14. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX671586 vs. ExPASy Swiss-Prot
Match: UPTG2_SOLTU (Alpha-1,4-glucan-protein synthase [UDP-forming] 2 OS=Solanum tuberosum GN=UPTG2 PE=1 SV=1)

HSP 1 Score: 523.087 bits (1346), Expect = 7.481e-148
Identity = 243/264 (92.05%), Postives = 252/264 (95.45%), Query Frame = 1 
Query:   37 MATPSTKPTPLLKHELDIVIPTIRNLDFLEMWRPFFEPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILGPKASCISFKDSACRCFGYMVSKKKYIFTIDDDCFVAKDPSGKEINALEQHIKNLLSPSTPLFFNTLYDPYREGADFVRGYPFSLREGVHTAVSHGLWLNIPDYDAPTQLVKPRERNTRYVDAVLTVPKGTLFPMCGMNLAFDRELIGPAMYFGLMGDGQPIGRYDDMWAGWCMKVICDHMGWGVKTGLPY 828
            MA  S  PTPLLK ELDIVIPTIRNLDFLEMWRPFF+PYHLIIVQDGDPSK I VP+GFDYELYNRNDINRILGPKASCISFKDSACRCFGYMVSKKKYI+TIDDDCFVAKDPSGK+INALEQHIKNLL PSTP FFNTLYDPYREGADFVRGYPFS+REG  TAVSHGLWLNIPDYDAPTQLVKPRERNTRYVDAV+T+PKGTLFPMCGMNLAFDRELIGPAMYFGLMGDGQPIGRYDDMWAGWC+KVICDH+G GVKTGLPY
Sbjct:    1 MAGSSVTPTPLLKDELDIVIPTIRNLDFLEMWRPFFQPYHLIIVQDGDPSKIINVPEGFDYELYNRNDINRILGPKASCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPHFFNTLYDPYREGADFVRGYPFSMREGAATAVSHGLWLNIPDYDAPTQLVKPRERNTRYVDAVMTIPKGTLFPMCGMNLAFDRELIGPAMYFGLMGDGQPIGRYDDMWAGWCIKVICDHLGLGVKTGLPY 264
[Close]
BLAST of CX671586 vs. ExPASy Swiss-Prot
Match: UPTG_MAIZE (Alpha-1,4-glucan-protein synthase [UDP-forming] OS=Zea mays GN=UPTG PE=1 SV=2)

HSP 1 Score: 520.39 bits (1339), Expect = 4.849e-147
Identity = 240/260 (92.31%), Postives = 251/260 (96.54%), Query Frame = 1 
Query:   49 STKPTPLLKHELDIVIPTIRNLDFLEMWRPFFEPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILGPKASCISFKDSACRCFGYMVSKKKYIFTIDDDCFVAKDPSGKEINALEQHIKNLLSPSTPLFFNTLYDPYREGADFVRGYPFSLREGVHTAVSHGLWLNIPDYDAPTQLVKPRERNTRYVDAVLTVPKGTLFPMCGMNLAFDRELIGPAMYFGLMGDGQPIGRYDDMWAGWCMKVICDHMGWGVKTGLPY 828
            ST  TPLLK ELDIVIPTIRNLDFLEMWR FF+PYHLIIVQDGDP+KTIKVP+GFDYELYNRNDINRILGPKASCISFKDSACRCFGYMVSKKKYI+TIDDDCFVAKDPSGK+INALEQHIKNLLSPSTP FFNTLYDPYREGADFVRGYPFSLREG HTAVSHGLWLNIPDYDAPTQLVKP+ERN RYVDAV+T+PKGTLFPMCGMNLAFDR+LIGPAMYFGLMGDGQPIGRYDDMWAGWC+KVICDH+  GVKTGLPY
Sbjct:   11 STPSTPLLKDELDIVIPTIRNLDFLEMWRAFFQPYHLIIVQDGDPTKTIKVPEGFDYELYNRNDINRILGPKASCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLSPSTPFFFNTLYDPYREGADFVRGYPFSLREGAHTAVSHGLWLNIPDYDAPTQLVKPKERNERYVDAVMTIPKGTLFPMCGMNLAFDRDLIGPAMYFGLMGDGQPIGRYDDMWAGWCVKVICDHLSLGVKTGLPY 270
[Close]
BLAST of CX671586 vs. ExPASy Swiss-Prot
Match: UPTG_PEA (Alpha-1,4-glucan-protein synthase [UDP-forming] OS=Pisum sativum GN=UPTG PE=1 SV=1)

HSP 1 Score: 518.85 bits (1335), Expect = 1.411e-146
Identity = 240/258 (93.02%), Postives = 250/258 (96.90%), Query Frame = 1 
Query:   55 KPTPLLKHELDIVIPTIRNLDFLEMWRPFFEPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILGPKASCISFKDSACRCFGYMVSKKKYIFTIDDDCFVAKDPSGKEINALEQHIKNLLSPSTPLFFNTLYDPYREGADFVRGYPFSLREGVHTAVSHGLWLNIPDYDAPTQLVKPRERNTRYVDAVLTVPKGTLFPMCGMNLAFDRELIGPAMYFGLMGDGQPIGRYDDMWAGWCMKVICDHMGWGVKTGLPY 828
            KPTPLLK ELDIVIPTIRNLDFLEMWRPFFE YHLIIVQDGDPSK IKVP+GFDYELYNRNDINRILGPKASCISFKDSACRCFGYMVSKKKYI+TIDDDCFVAKDP+G EINALEQHIKNLLSPSTP FFNTLYDPYREG DFVRGYPFSLREGV TAVSHGLWLNIPDYDAPTQLVKP ERNTR+VDAVLT+PKG+LFPMCGMNLAF+RELIGPAMYFGLMGDGQPIGRYDDMWAGWC+KVICDH+G+GVKTGLPY
Sbjct:    6 KPTPLLKDELDIVIPTIRNLDFLEMWRPFFEQYHLIIVQDGDPSKVIKVPEGFDYELYNRNDINRILGPKASCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPTGHEINALEQHIKNLLSPSTPFFFNTLYDPYREGTDFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVKPHERNTRFVDAVLTIPKGSLFPMCGMNLAFNRELIGPAMYFGLMGDGQPIGRYDDMWAGWCIKVICDHLGYGVKTGLPY 263
[Close]
BLAST of CX671586 vs. ExPASy Swiss-Prot
Match: UPTG1_SOLTU (Alpha-1,4-glucan-protein synthase [UDP-forming] 1 OS=Solanum tuberosum GN=UPTG1 PE=1 SV=2)

HSP 1 Score: 513.457 bits (1321), Expect = 5.928e-145
Identity = 236/256 (92.19%), Postives = 247/256 (96.48%), Query Frame = 1 
Query:   61 TPLLKHELDIVIPTIRNLDFLEMWRPFFEPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILGPKASCISFKDSACRCFGYMVSKKKYIFTIDDDCFVAKDPSGKEINALEQHIKNLLSPSTPLFFNTLYDPYREGADFVRGYPFSLREGVHTAVSHGLWLNIPDYDAPTQLVKPRERNTRYVDAVLTVPKGTLFPMCGMNLAFDRELIGPAMYFGLMGDGQPIGRYDDMWAGWCMKVICDHMGWGVKTGLPY 828
            TPLLK ELDIVIPTIRNLDFLEMWRPFF+PYHLIIVQDGDPSK IKVP+GFDYELYNRNDINRILGPKASCISFKDSACRCFGYMVSKKKYI+TIDDDCFVAKDPSGK+INALEQHIKNLL PSTP FFNTLYDPYR+GADFVRGYPFS+REG  TAVSHGLWLNIPDYDAPTQLVKP ERNTRYVDAV+T+PKGTLFPMCGMNLAFDR+LIGPAMYFGLMGDGQPIGRYDDMWAGWC KVICDH+G G+KTGLPY
Sbjct:    5 TPLLKDELDIVIPTIRNLDFLEMWRPFFQPYHLIIVQDGDPSKIIKVPEGFDYELYNRNDINRILGPKASCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPHFFNTLYDPYRDGADFVRGYPFSMREGAPTAVSHGLWLNIPDYDAPTQLVKPHERNTRYVDAVMTIPKGTLFPMCGMNLAFDRDLIGPAMYFGLMGDGQPIGRYDDMWAGWCTKVICDHLGLGIKTGLPY 260
The following BLAST results are available for this feature:
BLAST of CX671586 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
UPTG2_SOLTU7.481e-14892.05Alpha-1,4-glucan-protein synthase [UDP-forming] 2 ... [more]
UPTG_MAIZE4.849e-14792.31Alpha-1,4-glucan-protein synthase [UDP-forming] OS... [more]
UPTG_PEA1.411e-14693.02Alpha-1,4-glucan-protein synthase [UDP-forming] OS... [more]
UPTG1_SOLTU5.928e-14592.19Alpha-1,4-glucan-protein synthase [UDP-forming] 1 ... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS10_12A01_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-12A01-B2-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671586 ID=CX671586; Name=CX671586; organism=Citrus sinensis; type=EST; length=828bp
GAAGTCTCTCTCTCATTTTGTCTCAAATTTTTGAAGATGGCAACTCCTTC
AACAAAGCCAACGCCACTGCTGAAACACGAGCTGGATATCGTGATACCGA
CGATTCGAAACTTGGATTTCTTGGAGATGTGGAGGCCATTTTTTGAGCCG
TATCATTTGATCATCGTACAAGATGGTGACCCATCAAAGACCATCAAGGT
CCCTGACGGCTTTGACTACGAGCTCTACAACAGAAACGACATCAACCGCA
TTCTGGGTCCTAAGGCTTCTTGCATTTCCTTCAAGGACTCTGCTTGTCGA
TGCTTTGGCTACATGGTCTCTAAGAAGAAATATATTTTCACCATTGATGA
TGATTGCTTTGTTGCCAAAGATCCCTCTGGCAAAGAGATCAATGCACTCG
AGCAGCACATAAAGAACCTGTTGTCACCATCCACTCCATTATTCTTCAAC
ACCCTTTATGATCCATACAGGGAAGGTGCGGACTTTGTCCGTGGATACCC
TTTCAGTCTCCGTGAAGGTGTCCACACGGCTGTATCTCATGGCCTCTGGC
TGAACATCCCTGACTATGATGCACCCACTCAGCTGGTCAAGCCTCGTGAG
AGAAACACCAGGTATGTGGACGCTGTTCTGACGGTTCCTAAGGGAACCCT
GTTCCCAATGTGCGGTATGAATCTGGCATTCGACCGTGAGCTGATTGGAC
CGGCAATGTACTTTGGACTCATGGGTGATGGACAGCCAATAGGACGTTAT
GATGATATGTGGGCTGGCTGGTGCATGAAGGTAATATGTGATCATATGGG
ATGGGGTGTGAAAACCGGTCTGCCTTAC
back to top