EG358272

Overview
NameEG358272
Unique NameEG358272
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length702
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1011 contig Csv1_Contig1011:669..1370. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EG358272 vs. ExPASy Swiss-Prot
Match: SUCB_ARATH (Succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial OS=Arabidopsis thaliana GN=At2g20420 PE=1 SV=1)

HSP 1 Score: 414.461 bits (1064), Expect = 2.817e-115
Identity = 207/233 (88.84%), Postives = 223/233 (95.71%), Query Frame = 3
Query:    3 FAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKEIFALRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEDQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVALK 701
            F+I+LDRK+AGP+II C KGGTSIEDLAEK+P+MI+KVPIDVF GITDEDAAKVVDGLAPK ADR D+IEQVKKLY+LF ++DCT+LEINPLAETS  QLVAADAKLNFDDNAAFRQKE+FA+RDPTQEDPREVAAAK DLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASE QVVEAFKILTSD+KVKAILVNIFGGIMKCDVIASGIVNAAK+VALK
Sbjct:  144 FSIILDRKSAGPLIIACKKGGTSIEDLAEKFPDMIIKVPIDVFAGITDEDAAKVVDGLAPKAADRKDSIEQVKKLYELFRKTDCTMLEINPLAETSTNQLVAADAKLNFDDNAAFRQKEVFAMRDPTQEDPREVAAAKVDLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEHQVVEAFKILTSDDKVKAILVNIFGGIMKCDVIASGIVNAAKEVALK 376          
BLAST of EG358272 vs. ExPASy Swiss-Prot
Match: SUCB_ORYSJ (Succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial OS=Oryza sativa subsp. japonica GN=Os02g0621700 PE=1 SV=1)

HSP 1 Score: 413.305 bits (1061), Expect = 6.275e-115
Identity = 207/233 (88.84%), Postives = 221/233 (94.85%), Query Frame = 3
Query:    3 FAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKEIFALRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEDQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVALK 701
            FAI LDR TAGP+II CSKGGTSIEDLAEKYP+MI+KVPIDVF GITD+DAAKVVDGLAPK ADR  +IEQ+KKLY+LFC+SDCTLLEINPLAET+  +LVAADAKLNFDDNAAFRQKEIFA+RD TQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGG+ASE QVVEAFKILTSD++VKAILVNIFGGIMKCDVIASGIVNAAKQV LK
Sbjct:  145 FAITLDRNTAGPLIIACSKGGTSIEDLAEKYPDMIIKVPIDVFKGITDDDAAKVVDGLAPKTADRQSSIEQIKKLYELFCKSDCTLLEINPLAETADNKLVAADAKLNFDDNAAFRQKEIFAMRDTTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGSASEGQVVEAFKILTSDDRVKAILVNIFGGIMKCDVIASGIVNAAKQVDLK 377          
BLAST of EG358272 vs. ExPASy Swiss-Prot
Match: SUCB2_DICDI (Succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial OS=Dictyostelium discoideum GN=scsB PE=3 SV=1)

HSP 1 Score: 290.812 bits (743), Expect = 4.697e-78
Identity = 146/233 (62.66%), Postives = 176/233 (75.54%), Query Frame = 3
Query:    3 FAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKEIFALRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEDQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVALK 701
            FAI++DRK  GP++I   +GG  IE +AE+ P++I K PID+  GI  E    + + L         A +Q++ LY+LF +SD T +EINP AET+  Q++  DAK+NFDDNA+FRQKEIF +RD  +EDPREV A K  LNYIGLDG IGCMVNGAGLAMATMDIIKL GG PANFLDVGG+ASE  V EAFKILT D +VK +LVNIFGGIMKCD+IASGIVNA+KQV LK
Sbjct:  143 FAIVMDRKYGGPVMIASPQGGVDIESVAEETPDLIFKEPIDIVKGIRPEQTKNLAEKLGFTGEKAKIAQQQMENLYQLFIKSDATQVEINPFAETTDGQVICMDAKINFDDNASFRQKEIFEMRDTAEEDPREVEAGKFGLNYIGLDGNIGCMVNGAGLAMATMDIIKLKGGIPANFLDVGGSASEQAVTEAFKILTKDPRVKCLLVNIFGGIMKCDIIASGIVNASKQVGLK 375          
BLAST of EG358272 vs. ExPASy Swiss-Prot
Match: SUCB1_DICDI (Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial OS=Dictyostelium discoideum GN=scsC PE=3 SV=1)

HSP 1 Score: 281.567 bits (719), Expect = 2.850e-75
Identity = 137/232 (59.05%), Postives = 179/232 (77.16%), Query Frame = 3
Query:    3 FAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKEIFALRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEDQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVAL 698
            FAI++DRK  GP+++   +GG  IE +A   P+ I K PID+  G+  E   ++ + L     + + A +Q+KKLY  F ++DCTL+EINPLAET+   ++  DAKLNFDDNAAFR  +IF LRD +QEDPREV AA+ DLNYIGLDG IGC+VNGAGLAMA+MDIIKL+GG+PANFLDVGG A++ QV EA K+++SD+KVK+ILVNIFGGIMKCDVIA GI+ A K++++
Sbjct:  151 FAILMDRKAGGPVMVASPEGGVDIEGVARDNPSAIFKEPIDIMIGVQPEQTKRLAEKLGFSKKNISMAQDQMKKLYDFFIKNDCTLVEINPLAETASGDVLCMDAKLNFDDNAAFRHPDIFKLRDKSQEDPREVKAAEFDLNYIGLDGNIGCLVNGAGLAMASMDIIKLYGGSPANFLDVGGGATQKQVTEAIKLISSDKKVKSILVNIFGGIMKCDVIALGIIAALKELSI 382          
BLAST of EG358272 vs. ExPASy Swiss-Prot
Match: SUCB1_PIG (Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial (Fragment) OS=Sus scrofa GN=SUCLA2 PE=2 SV=1)

HSP 1 Score: 276.559 bits (706), Expect = 9.167e-74
Identity = 141/235 (60.00%), Postives = 176/235 (74.89%), Query Frame = 3
Query:    3 FAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVD--GLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKEIFALRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEDQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVALK 701
            FAI ++R   GP++IG S+GG +IED+A + P  IVK PID+  GI  E A ++    G  P + D   A E + KLY LF + D T++EINP+ E S   ++  DAK+NFD N+A+RQK+IF L+D TQED R+  AAKA+LNYIGLDG IGC+VNGAGLAMATMDIIKLHGGTPANFLDVGG A+  QV EAFK++TSD+KV +ILVNIFGGIM+CDVIA GIV A K + +K
Sbjct:  131 FAITMERSFQGPVLIGSSQGGVNIEDVAAETPEAIVKEPIDIVEGIKKEQAVRLAQKMGFPPSIVD--SAAENMIKLYNLFLKYDATMVEINPMVEDSDGAVLCMDAKINFDSNSAYRQKKIFDLQDWTQEDERDKDAAKANLNYIGLDGNIGCLVNGAGLAMATMDIIKLHGGTPANFLDVGGGATVHQVTEAFKLITSDKKVLSILVNIFGGIMRCDVIAQGIVMAVKDLEIK 363          
BLAST of EG358272 vs. ExPASy Swiss-Prot
Match: SUCB1_HUMAN (Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial OS=Homo sapiens GN=SUCLA2 PE=1 SV=3)

HSP 1 Score: 274.248 bits (700), Expect = 4.549e-73
Identity = 140/235 (59.57%), Postives = 175/235 (74.47%), Query Frame = 3
Query:    3 FAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVD--GLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKEIFALRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEDQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVALK 701
            FAI ++R   GP++IG S GG +IED+A + P  I+K PID+  GI  E A ++    G  P + +   A E + KLY LF + D T++EINP+ E S   ++  DAK+NFD N+A+RQK+IF L+D TQED R+  AAKA+LNYIGLDG IGC+VNGAGLAMATMDIIKLHGGTPANFLDVGG A+  QV EAFK++TSD+KV AILVNIFGGIM+CDVIA GIV A K + +K
Sbjct:  169 FAITMERSFQGPVLIGSSHGGVNIEDVAAESPEAIIKEPIDIEEGIKKEQALQLAQKMGFPPNIVE--SAAENMVKLYSLFLKYDATMIEINPMVEDSDGAVLCMDAKINFDSNSAYRQKKIFDLQDWTQEDERDKDAAKANLNYIGLDGNIGCLVNGAGLAMATMDIIKLHGGTPANFLDVGGGATVHQVTEAFKLITSDKKVLAILVNIFGGIMRCDVIAQGIVMAVKDLEIK 401          
BLAST of EG358272 vs. ExPASy Swiss-Prot
Match: SUCB1_BOVIN (Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial OS=Bos taurus GN=SUCLA2 PE=2 SV=1)

HSP 1 Score: 273.092 bits (697), Expect = 1.014e-72
Identity = 138/233 (59.23%), Postives = 173/233 (74.25%), Query Frame = 3
Query:    3 FAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKEIFALRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEDQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVALK 701
            FAI ++R   GP++IG S GG +IED+A + P  IVK PID+  GI  E A ++   +    +  + A E + KLY  F + D T++EINP+ E S   ++  DAK+NFD N+A+RQK+IF L+D TQED R+  AAKADLNYIGLDG IGC+VNGAGLAMATMDIIKLHGGTPANFLDVGG A+  QV EAFK++TSD+KV +ILVNIFGGIM+CDVIA GIV A K + +K
Sbjct:  169 FAITMERSFQGPVLIGSSHGGVNIEDVAAETPEAIVKEPIDIVEGIKKEQAVRLAQKMGFPASIVDSAAENMIKLYDPFLKYDATMVEINPMVEDSDGAVLCMDAKINFDSNSAYRQKKIFDLQDWTQEDERDKDAAKADLNYIGLDGNIGCLVNGAGLAMATMDIIKLHGGTPANFLDVGGGATVHQVTEAFKLITSDKKVLSILVNIFGGIMRCDVIAQGIVMAVKDLEIK 401          
BLAST of EG358272 vs. ExPASy Swiss-Prot
Match: SUCB1_MOUSE (Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial OS=Mus musculus GN=Sucla2 PE=1 SV=2)

HSP 1 Score: 271.552 bits (693), Expect = 2.949e-72
Identity = 137/235 (58.30%), Postives = 175/235 (74.47%), Query Frame = 3
Query:    3 FAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVD--GLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKEIFALRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEDQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVALK 701
            FAI ++R   GP++IG ++GG +IED+A + P  IVK PID+  GI  E A  +    G    + D   A E + KLY LF + D T++EINP+ E S  +++  DAK+NFD N+A+RQK+IF L+D +QED R+  AA AD+NYIGLDG IGC+VNGAGLAMATMDIIKLHGGTPANFLDVGG A+  QV EAFK++TSD+KV+AILVNIFGGIM+CDVIA GIV A K + ++
Sbjct:  169 FAITMERSFQGPVLIGSAQGGVNIEDVAAENPEAIVKEPIDIVEGIKKEQAVTLAQKMGFPSNIVD--SAAENMIKLYNLFLKYDATMVEINPMVEDSDGKVLCMDAKINFDSNSAYRQKKIFDLQDWSQEDERDKEAANADINYIGLDGSIGCLVNGAGLAMATMDIIKLHGGTPANFLDVGGGATVQQVTEAFKLITSDKKVQAILVNIFGGIMRCDVIAQGIVMAVKDLEIR 401          
BLAST of EG358272 vs. ExPASy Swiss-Prot
Match: SUCB1_MACFA (Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial OS=Macaca fascicularis GN=SUCLA2 PE=2 SV=1)

HSP 1 Score: 270.781 bits (691), Expect = 5.030e-72
Identity = 138/235 (58.72%), Postives = 174/235 (74.04%), Query Frame = 3
Query:    3 FAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVD--GLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKEIFALRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEDQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVALK 701
            FAI ++R   GP++IG S+GG +IED+A + P  I+  PID+  GI  E A ++    G  P + +   A E + KLY LF + D T++EINP+ E S   ++  DAK+NFD N+A+RQK+IF L+D TQED R+  AA+A+LNYIGLDG IGC+VNGAGLAMATMDIIKLHGGTPANFLDVGG A+  QV EAFK++TSD+KV AILVNIFGGIM CDVIA GIV A K + +K
Sbjct:  169 FAITMERSFQGPVLIGSSQGGVNIEDVAAETPEAIITEPIDIEEGIKKEQALQLAQKMGFPPNIVE--SAAENMVKLYSLFLKYDATMIEINPMVEDSDGAVLCMDAKINFDSNSAYRQKKIFDLQDWTQEDERDKDAAQANLNYIGLDGNIGCLVNGAGLAMATMDIIKLHGGTPANFLDVGGGATVHQVTEAFKLITSDKKVLAILVNIFGGIMSCDVIAQGIVTALKDLEIK 401          
BLAST of EG358272 vs. ExPASy Swiss-Prot
Match: SUCB_NEOFR (Succinyl-CoA ligase [GDP-forming] subunit beta, hydrogenosomal OS=Neocallimastix frontalis GN=SCSB PE=2 SV=2)

HSP 1 Score: 261.536 bits (667), Expect = 3.052e-69
Identity = 133/236 (56.36%), Postives = 176/236 (74.58%), Query Frame = 3
Query:    3 FAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDE---DAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKEIFALRDPTQEDPREVAA-AKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEDQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVAL 698
            FAI+LDR T GP+++  S+GG  IE++A+  P+ I+ VP  +  G+T E   D AK + G   K   +  A +   KLYK+F E D T++EINP+AE +  ++V  DAK  FDDNA+++ K IFALRD TQEDPREVA  AK +LNY+G++G IGC+VNGAGLAMATMDIIKL+GG PANFLDVGG+A+  QV EAFKI++SD+ V AILVNIFGGIM+CD++A G++ A K++ L
Sbjct:  144 FAILLDRATRGPVLVASSEGGVEIEEVAKTNPDAILTVPFSIKTGLTREVALDTAKKM-GFTEKCVPQ--AADTFMKLYKIFIEKDATMVEINPMAENNRGEVVCMDAKFGFDDNASYKPKGIFALRDTTQEDPREVAGHAKWNLNYVGMEGNIGCLVNGAGLAMATMDIIKLNGGVPANFLDVGGSATAKQVKEAFKIISSDKAVSAILVNIFGGIMRCDIVAEGVIQAVKELGL 376          
The following BLAST results are available for this feature:
BLAST of EG358272 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SUCB_ARATH2.817e-11588.84Succinyl-CoA ligase [GDP-forming] subunit beta, mi... [more]
SUCB_ORYSJ6.275e-11588.84Succinyl-CoA ligase [GDP-forming] subunit beta, mi... [more]
SUCB2_DICDI4.697e-7862.66Succinyl-CoA ligase [GDP-forming] subunit beta, mi... [more]
SUCB1_DICDI2.850e-7559.05Succinyl-CoA ligase [ADP-forming] subunit beta, mi... [more]
SUCB1_PIG9.167e-7460.00Succinyl-CoA ligase [ADP-forming] subunit beta, mi... [more]
SUCB1_HUMAN4.549e-7359.57Succinyl-CoA ligase [ADP-forming] subunit beta, mi... [more]
SUCB1_BOVIN1.014e-7259.23Succinyl-CoA ligase [ADP-forming] subunit beta, mi... [more]
SUCB1_MOUSE2.949e-7258.30Succinyl-CoA ligase [ADP-forming] subunit beta, mi... [more]
SUCB1_MACFA5.030e-7258.72Succinyl-CoA ligase [ADP-forming] subunit beta, mi... [more]
SUCB_NEOFR3.052e-6956.36Succinyl-CoA ligase [GDP-forming] subunit beta, hy... [more]

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Properties
Property NameValue
Genbank description12d8 Citrus sinensis flesh suppression subtractive hybridization (SSH) cDNA library Moro nucellare 58-8D-I cultivar Citrus sinensis cDNA clone Cl0012d8, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EG358272 ID=EG358272; Name=EG358272; organism=Citrus sinensis; type=EST; length=702bp
ACTTTGCTATCATGTTGGATCGTAAAACTGCTGGCCCTATAATAATTGGT
TGCAGCAAGGGAGGAACCAGCATTGAAGACCTTGCTGAGAAATATCCTAA
CATGATTGTTAAGGTGCCTATTGATGTTTTCAATGGAATCACTGATGAAG
ATGCTGCTAAGGTTGTTGATGGTTTGGCGCCCAAGGTTGCTGATAGAAAT
GATGCAATTGAACAAGTGAAGAAACTGTATAAACTCTTTTGTGAGAGTGA
CTGCACATTATTGGAAATCAATCCTCTAGCAGAGACTTCTGGTAAGCAGT
TGGTGGCTGCTGATGCTAAGTTGAATTTTGATGATAATGCTGCCTTCCGT
CAGAAAGAGATATTTGCTCTTCGTGACCCAACGCAAGAGGATCCTCGAGA
GGTGGCTGCTGCCAAAGCTGATTTAAATTACATTGGCTTGGATGGAGAAA
TTGGTTGCATGGTGAATGGTGCAGGATTAGCTATGGCTACAATGGATATA
ATCAAATTACATGGTGGAACTCCTGCCAATTTCCTGGATGTTGGTGGTAA
TGCTTCTGAGGACCAGGTGGTTGAGGCATTTAAAATTTTGACTTCTGATG
AGAAAGTCAAAGCAATCTTGGTGAACATATTTGGAGGAATCATGAAATGT
GATGTAATAGCCAGTGGAATTGTCAATGCTGCTAAACAAGTTGCACTCAA
AG
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