CX671544

Overview
NameCX671544
Unique NameCX671544
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length898
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7879 contig Csv1_Contig7879:340..1236. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX671544 vs. ExPASy Swiss-Prot
Match: DHX8_MOUSE (ATP-dependent RNA helicase DHX8 OS=Mus musculus GN=Dhx8 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.967e-13
Identity = 34/72 (47.22%), Postives = 47/72 (65.28%), Query Frame = -2
Query:  682 NAALKQPEGTYRALASGQVVQIHPSSVLFRAKPECIVFNELIQTNHKYIRNITRIDYLWLTELAPQYYTMQN 897
            NAA K P+  YR L   QVV IHPSS LF  +PE +V++EL+ T  +Y+R +T ID  WL E AP ++ + +
Sbjct: 1138 NAAKKDPQEGYRTLIDQQVVYIHPSSALFNRQPEWVVYHELVLTTKEYMREVTTIDPRWLVEFAPAFFKVSD 1209          
BLAST of CX671544 vs. ExPASy Swiss-Prot
Match: DHX8_HUMAN (ATP-dependent RNA helicase DHX8 OS=Homo sapiens GN=DHX8 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.967e-13
Identity = 34/72 (47.22%), Postives = 47/72 (65.28%), Query Frame = -2
Query:  682 NAALKQPEGTYRALASGQVVQIHPSSVLFRAKPECIVFNELIQTNHKYIRNITRIDYLWLTELAPQYYTMQN 897
            NAA K P+  YR L   QVV IHPSS LF  +PE +V++EL+ T  +Y+R +T ID  WL E AP ++ + +
Sbjct: 1114 NAAKKDPQEGYRTLIDQQVVYIHPSSALFNRQPEWVVYHELVLTTKEYMREVTTIDPRWLVEFAPAFFKVSD 1185          
BLAST of CX671544 vs. ExPASy Swiss-Prot
Match: MOG5_CAEEL (Probable pre-mRNA-splicing factor ATP-dependent RNA helicase mog-5 OS=Caenorhabditis elegans GN=mog-5 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.775e-12
Identity = 32/68 (47.06%), Postives = 45/68 (66.18%), Query Frame = -2
Query:  694 NAALKQPEGTYRALASGQVVQIHPSSVLFRAKPECIVFNELIQTNHKYIRNITRIDYLWLTELAPQYY 897
            NAA + P+  YR L  GQ V IHPSS  F+ +PE +V++EL+ T  +Y+R +T ID  WL E AP ++
Sbjct: 1089 NAAKRDPQEGYRTLTDGQNVYIHPSSACFQQQPEWVVYHELVMTTKEYMREVTAIDPKWLVEFAPSFF 1156          
BLAST of CX671544 vs. ExPASy Swiss-Prot
Match: DHX33_HUMAN (Putative ATP-dependent RNA helicase DHX33 OS=Homo sapiens GN=DHX33 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.775e-12
Identity = 33/63 (52.38%), Postives = 43/63 (68.25%), Query Frame = -2
Query:  694 QPEGTYRALASGQVVQIHPSSVLFRAKPECIVFNELIQTNHKYIRNITRIDYLWLTELAPQYY 882
            QP+GTY    + Q V IHPSSVLF  KP C+V+ EL+ TN  Y+R++  ID  WL E AP+Y+
Sbjct:  636 QPDGTYATTDTHQPVAIHPSSVLFHCKPACVVYTELLYTNKCYMRDLCVIDAQWLYEAAPEYF 698          
BLAST of CX671544 vs. ExPASy Swiss-Prot
Match: DHX8_DICDI (ATP-dependent RNA helicase dhx8 OS=Dictyostelium discoideum GN=dhx8 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.744e-12
Identity = 31/74 (41.89%), Postives = 46/74 (62.16%), Query Frame = -2
Query:  676 NAALKQPEGTYRALASGQVVQIHPSSVLFRAKPECIVFNELIQTNHKYIRNITRIDYLWLTELAPQYYTMQN*N 897
            NA+ K P   Y+ L  GQ V IHPSS LF   P+ ++++EL+ T  +Y+R +  ID  WL ELAP+++   + N
Sbjct: 1057 NASKKDPNEGYKTLVEGQPVYIHPSSTLFNRNPDWVIYHELVMTTKEYMREVCTIDPKWLVELAPKFFKTSDPN 1130          
BLAST of CX671544 vs. ExPASy Swiss-Prot
Match: DHX8_ARATH (Probable pre-mRNA-splicing factor ATP-dependent RNA helicase OS=Arabidopsis thaliana GN=At3g26560 PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.962e-11
Identity = 29/72 (40.28%), Postives = 48/72 (66.67%), Query Frame = -2
Query:  682 NAALKQPEGTYRALASGQVVQIHPSSVLFRAKPECIVFNELIQTNHKYIRNITRIDYLWLTELAPQYYTMQN 897
            + A K P+  YR L   Q V IHPSS LF+ +P+ +++++L+ T  +Y+R +T ID  WL ELAP+++ + +
Sbjct: 1064 HGARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHDLVMTTKEYMREVTVIDPKWLVELAPRFFKVSD 1135          
BLAST of CX671544 vs. ExPASy Swiss-Prot
Match: DHX33_MOUSE (Putative ATP-dependent RNA helicase DHX33 OS=Mus musculus GN=Dhx33 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.371e-11
Identity = 32/68 (47.06%), Postives = 42/68 (61.76%), Query Frame = -2
Query:  694 NAALKQPEGTYRALASGQVVQIHPSSVLFRAKPECIVFNELIQTNHKYIRNITRIDYLWLTELAPQYY 897
            N A  Q +GTY    + Q V IHPSSVLF  KP C+V+  L+ TN  Y+R++  +D  WL E AP Y+
Sbjct:  622 NTAELQTDGTYATTDTHQPVAIHPSSVLFHCKPACVVYTSLLYTNKCYMRDLCVVDAEWLYEAAPDYF 689          
The following BLAST results are available for this feature:
BLAST of CX671544 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
DHX8_MOUSE7.967e-1347.22ATP-dependent RNA helicase DHX8 OS=Mus musculus GN... [more]
DHX8_HUMAN7.967e-1347.22ATP-dependent RNA helicase DHX8 OS=Homo sapiens GN... [more]
MOG5_CAEEL1.775e-1247.06Probable pre-mRNA-splicing factor ATP-dependent RN... [more]
DHX33_HUMAN1.775e-1252.38Putative ATP-dependent RNA helicase DHX33 OS=Homo ... [more]
DHX8_DICDI6.744e-1241.89ATP-dependent RNA helicase dhx8 OS=Dictyostelium d... [more]
DHX8_ARATH1.962e-1140.28Probable pre-mRNA-splicing factor ATP-dependent RN... [more]
DHX33_MOUSE4.371e-1147.06Putative ATP-dependent RNA helicase DHX33 OS=Mus m... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS10_11F12_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-11F12-L23-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671544 ID=CX671544; Name=CX671544; organism=Citrus sinensis; type=EST; length=898bp
TTTTTTTTTTTTTTTTTAAAATTACAAATGATTCCTGAAATTATATAAAT
GAGTGCAAAGAGTACAAAATACAATTGGCTGTCTTCAGCTGAAAATATTT
CTGTACTGGTTGAAAATGACGCATTTGACATCACCGGCCATCATTGAAAG
CTCAGCATAGTCAGAAAACATGAAAATAATTAAAATAAATGCAACCAAAA
TTGAAAGGGTTTCACACGTTCACTCCTAAAATAACACTAATATAAGCAGT
AAACTTATTCTTGAACAGCCCTTCAAAATAGGCAGCCGTAACTATGCACA
AATCCGTGATGTGTCATTTCTCAATTCTTCATACATCCTGATTCTTGACC
CAAACATGCAGATTTTTCAAACCAGCTTGTGAAGGCCACAAAGTAGCCCA
TGATAAAACCATGGGCAACAACCAGGCTTGTTTGTAGTGCAGAGAAGCTT
CTCAAACTTTTGCAGCCACCTGTTCAGCAACATTTTCAAAAGAATAGGAC
CAGTAATGCATGTTAACATCAAGTTTTGACTTCCGAATAGTTTCCAGCAG
AAACATTTACTTGCTCCCAACAATCAGCAATGTAAATCAGTGAAAGAATG
TCGATCTACTTGCCCCCATTTCGATGATGGGAGGATAGAATTGAGACATC
AAGCTGTTACTGTTTGTAATTGAATATTTTAATTCTGCATGGTATAATAT
TGAGGAGCCAATTCAGTCAACCATAAGTAGTCAATTCTAGTTATGTTCCG
GATATATTTGTGATTAGTTTGGATCAGTTCATTGAATACTATGCACTCTG
GTTTTGCTCGAAATAAGACAGAAGAAGGATGAATCTGCACCACCTGACCA
CTTGCCAAAGCCCTGTATGTTCCCTCGGGCTGCTTCAAAGCTGCATTG
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