EG358270

Overview
NameEG358270
Unique NameEG358270
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length725
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2092 contig Csv1_Contig2092:811..1535. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EG358270 vs. ExPASy Swiss-Prot
Match: ERF1Z_ARATH (Eukaryotic peptide chain release factor subunit 1-3 OS=Arabidopsis thaliana GN=ERF1-3 PE=2 SV=1)

HSP 1 Score: 365.54 bits (937), Expect = 1.581e-100
Identity = 179/211 (84.83%), Postives = 196/211 (92.89%), Query Frame = 2
Query:    2 LAGSADFKTELSQSDMFDPRLQAKILKVVDVSYGGENGFNQAIELSAESLSNVKFIQEKRLIGKYFEEISQDTGKYVFGADDTLKALDMGAVDTLIVWENLDITRYVLKNTVTGEIVIKHLNREQETNQNNFRDSATSAELEVQEKSSLLEWFANEYRRFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQLDMRSFDEFSDDGEIYDDSE 634
            LAGSADFKTELSQS++FDPRLQAKIL VVDVSYGGENGFNQAIELSAE LSNVKFIQEK+LIGKYFEEISQDTGKYVFG +DTLKAL+MGAV+TLIVWENLDI RY LKN  TGEIVIKHL ++QE NQ+NF D+ T+AELEVQEK  LLEWFANEY+RFGCTLEFVTNKSQEGSQFCRGFGGIGG+LRYQLDMR+FDE S DGE+Y+DS+
Sbjct:  226 LAGSADFKTELSQSELFDPRLQAKILNVVDVSYGGENGFNQAIELSAEILSNVKFIQEKKLIGKYFEEISQDTGKYVFGVEDTLKALEMGAVETLIVWENLDINRYELKNNTTGEIVIKHLGKDQENNQSNFHDAETNAELEVQEKMPLLEWFANEYKRFGCTLEFVTNKSQEGSQFCRGFGGIGGLLRYQLDMRTFDELS-DGEVYEDSD 435          
BLAST of EG358270 vs. ExPASy Swiss-Prot
Match: ERF1Y_ARATH (Eukaryotic peptide chain release factor subunit 1-2 OS=Arabidopsis thaliana GN=ERF1-2 PE=2 SV=1)

HSP 1 Score: 356.681 bits (914), Expect = 7.346e-98
Identity = 173/211 (81.99%), Postives = 195/211 (92.42%), Query Frame = 2
Query:    2 LAGSADFKTELSQSDMFDPRLQAKILKVVDVSYGGENGFNQAIELSAESLSNVKFIQEKRLIGKYFEEISQDTGKYVFGADDTLKALDMGAVDTLIVWENLDITRYVLKNTVTGEIVIKHLNREQETNQNNFRDSATSAELEVQEKSSLLEWFANEYRRFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQLDMRSFDEFSDDGEIYDDSE 634
            LAGSADFKTELSQS++FDPRLQAKIL VVDVSYGGENGFNQAIELSAE LSNVKFIQEK+LIGKYFEEISQDTGKYVFG +DTLKAL+MGA++TLIVWENLDI RY LKN+ TGE+V+KH  ++QE++ +NF DS T+AELEVQEK  LLEWFANEY+RFGCTLEFVTNKSQEGSQFCRGFGGIGG+LRYQLDMR+FDE SD  E+Y+DS+
Sbjct:  225 LAGSADFKTELSQSELFDPRLQAKILNVVDVSYGGENGFNQAIELSAEILSNVKFIQEKKLIGKYFEEISQDTGKYVFGVEDTLKALEMGAIETLIVWENLDINRYELKNSTTGEMVVKHFGKDQESDTSNFHDSETNAELEVQEKMPLLEWFANEYKRFGCTLEFVTNKSQEGSQFCRGFGGIGGMLRYQLDMRTFDELSDT-EVYEDSD 434          
BLAST of EG358270 vs. ExPASy Swiss-Prot
Match: ERF1X_ARATH (Eukaryotic peptide chain release factor subunit 1-1 OS=Arabidopsis thaliana GN=ERF1-1 PE=2 SV=2)

HSP 1 Score: 340.502 bits (872), Expect = 5.448e-93
Identity = 169/209 (80.86%), Postives = 184/209 (88.04%), Query Frame = 2
Query:    2 LAGSADFKTELSQSDMFDPRLQAKILKVVDVSYGGENGFNQAIELSAESLSNVKFIQEKRLIGKYFEEISQDTGKYVFGADDTLKALDMGAVDTLIVWENLDITRYVLKNTVTGEIVIKHLNREQETNQNNFRDSATSAELEVQEKSSLLEWFANEYRRFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQLDMRSFDEFSDDGEIYDD 628
            LAGSADFKTELSQSDMFDPRL AKIL VVDVSYGGENGFNQAIELSAE L+NVKFIQEKRLIGKYFEEISQDTGKYVFG +DTL AL+ GA++TLIVWENLDI RYV+KN+ TGE VIKHLN+EQE N  NF+ + +   L+V+EK SLLEW ANEYRRFGC LEFVTNKSQEGSQFCRGFGGIGGILRYQLDM +FD  S+DGE  DD
Sbjct:  227 LAGSADFKTELSQSDMFDPRLAAKILNVVDVSYGGENGFNQAIELSAEILANVKFIQEKRLIGKYFEEISQDTGKYVFGVEDTLNALESGAIETLIVWENLDINRYVMKNSATGETVIKHLNKEQEANTENFKVADSDLALDVEEKLSLLEWLANEYRRFGCALEFVTNKSQEGSQFCRGFGGIGGILRYQLDMTAFD--SEDGEALDD 433          
BLAST of EG358270 vs. ExPASy Swiss-Prot
Match: ERF1_POLMI (Eukaryotic peptide chain release factor subunit 1 OS=Polyandrocarpa misakiensis GN=ERF1 PE=2 SV=1)

HSP 1 Score: 297.36 bits (760), Expect = 5.289e-80
Identity = 147/209 (70.33%), Postives = 171/209 (81.82%), Query Frame = 2
Query:    2 LAGSADFKTELSQSDMFDPRLQAKILKVVDVSYGGENGFNQAIELSAESLSNVKFIQEKRLIGKYFEEISQDTGKYVFGADDTLKALDMGAVDTLIVWENLDITRYVLKNTVTGEIVIKHLNREQETNQNNFRDSATSAELEVQEKSSLLEWFANEYRRFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQLDMRSFDEFSDDGEIYDD 628
            LAGSADFKTELSQSDMFD RLQ KILK+VDVSYGGENGFNQAIELSAE LSNVKFIQEK+LIG+YF+EISQDTGKY FG DDTLKAL+MGAV+ LIVWENLD  RYVLKN  T E  I  L  +QE ++ +F D  T  E+E+ E  SLLEWFAN Y++FG TLE VT++SQEGSQF +GFGGIGG+LRY++D +  +   DD ++YDD
Sbjct:  226 LAGSADFKTELSQSDMFDQRLQVKILKLVDVSYGGENGFNQAIELSAEVLSNVKFIQEKKLIGRYFDEISQDTGKYCFGVDDTLKALEMGAVEILIVWENLDTMRYVLKNHTTDEEKILFLKPDQEKDKTHFTDKDTGVEMEMVESCSLLEWFANNYKKFGSTLEIVTDRSQEGSQFVKGFGGIGGMLRYRIDFQGMEFNDDDPDLYDD 434          
BLAST of EG358270 vs. ExPASy Swiss-Prot
Match: ERF1_DROME (Eukaryotic peptide chain release factor subunit 1 OS=Drosophila melanogaster GN=eRF1 PE=1 SV=2)

HSP 1 Score: 287.73 bits (735), Expect = 4.191e-77
Identity = 142/212 (66.98%), Postives = 171/212 (80.66%), Query Frame = 2
Query:    2 LAGSADFKTELSQSDMFDPRLQAKILKVVDVSYGGENGFNQAIELSAESLSNVKFIQEKRLIGKYFEEISQDTGKYVFGADDTLKALDMGAVDTLIVWENLDITRYVLKNTVTG-EIVIKHLNREQETNQNNFRDSATSAELEVQEKSSLLEWFANEYRRFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQLDMRS--FDEFSDDGEIYDD 628
            LAGSADFKTELSQSDMFDPRLQ+K++K+VDVSYGGENGFNQAIEL+AESL NVKFIQEK+LIG+YF+EISQDTGKY FG +DTL+AL++G+V+TLI WENLDI RYVLKN        + HL  EQE ++++F D  +  E+E+ E   LLEW AN Y+ FG TLE +T+KSQEGSQF RGFGGIGGILRY++D +S   DE  +DG   DD
Sbjct:  226 LAGSADFKTELSQSDMFDPRLQSKVIKLVDVSYGGENGFNQAIELAAESLQNVKFIQEKKLIGRYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNHANSTSTTVLHLTPEQEKDKSHFTDKESGVEMELIESQPLLEWLANNYKMFGATLEIITDKSQEGSQFVRGFGGIGGILRYKVDFQSMQLDELDNDGFDLDD 437          
BLAST of EG358270 vs. ExPASy Swiss-Prot
Match: ERF1_RAT (Eukaryotic peptide chain release factor subunit 1 OS=Rattus norvegicus GN=Etf1 PE=2 SV=3)

HSP 1 Score: 280.796 bits (717), Expect = 5.123e-75
Identity = 141/208 (67.79%), Postives = 167/208 (80.29%), Query Frame = 2
Query:    2 LAGSADFKTELSQSDMFDPRLQAKILKVVDVSYGGENGFNQAIELSAESLSNVKFIQEKRLIGKYFEEISQDTGKYVFGADDTLKALDMGAVDTLIVWENLDITRYVLKNTVTGEIVIKHLNREQETNQNNFRDSATSAELEVQEKSSLLEWFANEYRRFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQLDMRSFDEFSDDGEIYD 625
            LAGSADFKTELSQSDMFD RLQ+K+LK+VD+SYGGENGFNQAIELS E LSNVKFIQEK+LIG+YF+EISQDTGKY FG +DTLKAL+MGAV+ LIV+ENLDI RYVL    T E  I +L  EQE ++++F D  T  E E+ E   LLEWFAN Y++FG TLE VT+KSQEGSQF +GFGGIGGILRY++D +  +    D E +D
Sbjct:  226 LAGSADFKTELSQSDMFDQRLQSKVLKLVDISYGGENGFNQAIELSTEVLSNVKFIQEKKLIGRYFDEISQDTGKYCFGVEDTLKALEMGAVEILIVYENLDIMRYVLHCQGTEEEKILYLTPEQEKDKSHFTDKETGQEHELIESMPLLEWFANNYKKFGATLEIVTDKSQEGSQFVKGFGGIGGILRYRVDFQGMEYQGGDDEFFD 433          
BLAST of EG358270 vs. ExPASy Swiss-Prot
Match: ERF1_RABIT (Eukaryotic peptide chain release factor subunit 1 OS=Oryctolagus cuniculus GN=ETF1 PE=2 SV=3)

HSP 1 Score: 280.796 bits (717), Expect = 5.123e-75
Identity = 141/208 (67.79%), Postives = 167/208 (80.29%), Query Frame = 2
Query:    2 LAGSADFKTELSQSDMFDPRLQAKILKVVDVSYGGENGFNQAIELSAESLSNVKFIQEKRLIGKYFEEISQDTGKYVFGADDTLKALDMGAVDTLIVWENLDITRYVLKNTVTGEIVIKHLNREQETNQNNFRDSATSAELEVQEKSSLLEWFANEYRRFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQLDMRSFDEFSDDGEIYD 625
            LAGSADFKTELSQSDMFD RLQ+K+LK+VD+SYGGENGFNQAIELS E LSNVKFIQEK+LIG+YF+EISQDTGKY FG +DTLKAL+MGAV+ LIV+ENLDI RYVL    T E  I +L  EQE ++++F D  T  E E+ E   LLEWFAN Y++FG TLE VT+KSQEGSQF +GFGGIGGILRY++D +  +    D E +D
Sbjct:  226 LAGSADFKTELSQSDMFDQRLQSKVLKLVDISYGGENGFNQAIELSTEVLSNVKFIQEKKLIGRYFDEISQDTGKYCFGVEDTLKALEMGAVEILIVYENLDIMRYVLHCQGTEEEKILYLTPEQEKDKSHFTDKETGQEHELIESMPLLEWFANNYKKFGATLEIVTDKSQEGSQFVKGFGGIGGILRYRVDFQGMEYQGGDDEFFD 433          
BLAST of EG358270 vs. ExPASy Swiss-Prot
Match: ERF1_MOUSE (Eukaryotic peptide chain release factor subunit 1 OS=Mus musculus GN=Etf1 PE=1 SV=4)

HSP 1 Score: 280.796 bits (717), Expect = 5.123e-75
Identity = 141/208 (67.79%), Postives = 167/208 (80.29%), Query Frame = 2
Query:    2 LAGSADFKTELSQSDMFDPRLQAKILKVVDVSYGGENGFNQAIELSAESLSNVKFIQEKRLIGKYFEEISQDTGKYVFGADDTLKALDMGAVDTLIVWENLDITRYVLKNTVTGEIVIKHLNREQETNQNNFRDSATSAELEVQEKSSLLEWFANEYRRFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQLDMRSFDEFSDDGEIYD 625
            LAGSADFKTELSQSDMFD RLQ+K+LK+VD+SYGGENGFNQAIELS E LSNVKFIQEK+LIG+YF+EISQDTGKY FG +DTLKAL+MGAV+ LIV+ENLDI RYVL    T E  I +L  EQE ++++F D  T  E E+ E   LLEWFAN Y++FG TLE VT+KSQEGSQF +GFGGIGGILRY++D +  +    D E +D
Sbjct:  226 LAGSADFKTELSQSDMFDQRLQSKVLKLVDISYGGENGFNQAIELSTEVLSNVKFIQEKKLIGRYFDEISQDTGKYCFGVEDTLKALEMGAVEILIVYENLDIMRYVLHCQGTEEEKILYLTPEQEKDKSHFTDKETGQEHELIESMPLLEWFANNYKKFGATLEIVTDKSQEGSQFVKGFGGIGGILRYRVDFQGMEYQGGDDEFFD 433          
BLAST of EG358270 vs. ExPASy Swiss-Prot
Match: ERF1_MESAU (Eukaryotic peptide chain release factor subunit 1 OS=Mesocricetus auratus GN=ETF1 PE=1 SV=3)

HSP 1 Score: 280.796 bits (717), Expect = 5.123e-75
Identity = 141/208 (67.79%), Postives = 167/208 (80.29%), Query Frame = 2
Query:    2 LAGSADFKTELSQSDMFDPRLQAKILKVVDVSYGGENGFNQAIELSAESLSNVKFIQEKRLIGKYFEEISQDTGKYVFGADDTLKALDMGAVDTLIVWENLDITRYVLKNTVTGEIVIKHLNREQETNQNNFRDSATSAELEVQEKSSLLEWFANEYRRFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQLDMRSFDEFSDDGEIYD 625
            LAGSADFKTELSQSDMFD RLQ+K+LK+VD+SYGGENGFNQAIELS E LSNVKFIQEK+LIG+YF+EISQDTGKY FG +DTLKAL+MGAV+ LIV+ENLDI RYVL    T E  I +L  EQE ++++F D  T  E E+ E   LLEWFAN Y++FG TLE VT+KSQEGSQF +GFGGIGGILRY++D +  +    D E +D
Sbjct:  226 LAGSADFKTELSQSDMFDQRLQSKVLKLVDISYGGENGFNQAIELSTEVLSNVKFIQEKKLIGRYFDEISQDTGKYCFGVEDTLKALEMGAVEILIVYENLDIMRYVLHCQGTEEEKILYLTPEQEKDKSHFTDKETGQEHELIESMPLLEWFANNYKKFGATLEIVTDKSQEGSQFVKGFGGIGGILRYRVDFQGMEYQGGDDEFFD 433          
BLAST of EG358270 vs. ExPASy Swiss-Prot
Match: ERF1_HUMAN (Eukaryotic peptide chain release factor subunit 1 OS=Homo sapiens GN=ETF1 PE=1 SV=3)

HSP 1 Score: 280.796 bits (717), Expect = 5.123e-75
Identity = 141/208 (67.79%), Postives = 167/208 (80.29%), Query Frame = 2
Query:    2 LAGSADFKTELSQSDMFDPRLQAKILKVVDVSYGGENGFNQAIELSAESLSNVKFIQEKRLIGKYFEEISQDTGKYVFGADDTLKALDMGAVDTLIVWENLDITRYVLKNTVTGEIVIKHLNREQETNQNNFRDSATSAELEVQEKSSLLEWFANEYRRFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQLDMRSFDEFSDDGEIYD 625
            LAGSADFKTELSQSDMFD RLQ+K+LK+VD+SYGGENGFNQAIELS E LSNVKFIQEK+LIG+YF+EISQDTGKY FG +DTLKAL+MGAV+ LIV+ENLDI RYVL    T E  I +L  EQE ++++F D  T  E E+ E   LLEWFAN Y++FG TLE VT+KSQEGSQF +GFGGIGGILRY++D +  +    D E +D
Sbjct:  226 LAGSADFKTELSQSDMFDQRLQSKVLKLVDISYGGENGFNQAIELSTEVLSNVKFIQEKKLIGRYFDEISQDTGKYCFGVEDTLKALEMGAVEILIVYENLDIMRYVLHCQGTEEEKILYLTPEQEKDKSHFTDKETGQEHELIESMPLLEWFANNYKKFGATLEIVTDKSQEGSQFVKGFGGIGGILRYRVDFQGMEYQGGDDEFFD 433          
The following BLAST results are available for this feature:
BLAST of EG358270 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
ERF1Z_ARATH1.581e-10084.83Eukaryotic peptide chain release factor subunit 1-... [more]
ERF1Y_ARATH7.346e-9881.99Eukaryotic peptide chain release factor subunit 1-... [more]
ERF1X_ARATH5.448e-9380.86Eukaryotic peptide chain release factor subunit 1-... [more]
ERF1_POLMI5.289e-8070.33Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_DROME4.191e-7766.98Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_RAT5.123e-7567.79Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_RABIT5.123e-7567.79Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_MOUSE5.123e-7567.79Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_MESAU5.123e-7567.79Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_HUMAN5.123e-7567.79Eukaryotic peptide chain release factor subunit 1 ... [more]

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Properties
Property NameValue
Genbank description9d12 Citrus sinensis flesh suppression subtractive hybridization (SSH) cDNA library Moro nucellare 58-8D-I cultivar Citrus sinensis cDNA clone Cl009d12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EG358270 ID=EG358270; Name=EG358270; organism=Citrus sinensis; type=EST; length=725bp
ACTTGCTGGATCAGCCGACTTTAAAACTGAGCTTAGTCAGTCAGATATGT
TTGATCCTCGCCTTCAGGCTAAAATTTTGAAAGTAGTAGATGTTTCTTAT
GGAGGGGAGAATGGATTTAACCAGGCAATTGAGCTATCTGCTGAAAGTCT
GTCCAATGTGAAGTTTATACAAGAGAAGCGTTTGATAGGAAAGTATTTTG
AAGAGATAAGCCAGGATACTGGGAAGTATGTTTTTGGTGCTGATGACACG
CTGAAAGCTTTGGATATGGGTGCTGTCGACACGCTAATTGTTTGGGAAAA
TTTGGACATTACTAGGTATGTCTTGAAAAATACTGTTACTGGTGAGATTG
TCATAAAACATTTGAACAGGGAGCAAGAGACCAATCAGAACAACTTTCGT
GATTCTGCCACCTCTGCTGAATTGGAGGTTCAGGAAAAGTCATCGCTGCT
TGAGTGGTTTGCAAATGAATACAGGAGGTTTGGTTGCACACTCGAGTTTG
TTACCAACAAATCACAAGAGGGATCCCAGTTTTGCAGAGGCTTTGGTGGT
ATTGGTGGAATACTCCGCTACCAGCTTGATATGAGATCATTTGATGAGTT
TTCTGATGATGGAGAAATTTATGATGATTCTGAATAGCAATCAATCAAAC
CTACCCCATTGCTGGTGCAGGATGACGACGTGAAGGGCCTGCACCAGCGC
GCGATTCGTCGCGCCAACTTTGGAG
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