CX671540

Overview
NameCX671540
Unique NameCX671540
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length916
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5062 contig Csv1_Contig5062:250..1165. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX671540 vs. ExPASy Swiss-Prot
Match: AMO_LENCU (Primary amine oxidase (Fragment) OS=Lens culinaris PE=1 SV=3)

HSP 1 Score: 251.521 bits (641), Expect = 4.911e-66
Identity = 118/207 (57.00%), Postives = 142/207 (68.60%), Query Frame = -1
Query:  296 HDHFLNYYLDLDIDGYANSFEKTKLVTRRNTKANTPRKSY*TVEKETAKTEFEARLKLDTKPMEFAMVNPNKKTKIGHXXXXXXXXXXXXXXXLTDDDYPQIRAGFTDYNIWVTPYNKSEKYSGGNYVDQSHGDDTLLQCTDGNREIENKDIVLWYTMGIHHAPCQEDFPVMPTVSGGFELRPTNFFEYNPVLKVIPPKHVQWPNCT 916
            HDHF  YYLD DIDG  NSFEKT L T R     + RKSY T E +TAKTE +A++ +   P E  +VNPN KT +G+               LT+DDYPQIR  FT+YN+WVTPYN++EK++GG YVD S GDDTL   T  NREI NKDIV+W+ +GIHH P QEDFP+MP +S  FELRPTNFFE NPVLK +PP+   WP C+
Sbjct:  460 HDHFYIYYLDFDIDGTQNSFEKTSLKTVRIVDGGSKRKSYWTTETQTAKTESDAKITIGLAPAELVVVNPNIKTAVGNEVGYRLIPAIPAHPLLTEDDYPQIRGAFTNYNVWVTPYNRTEKWAGGLYVDHSRGDDTLAVWTKKNREIVNKDIVMWHVVGIHHVPAQEDFPIMPLLSTSFELRPTNFFERNPVLKTLPPRDFTWPGCS 666          
BLAST of CX671540 vs. ExPASy Swiss-Prot
Match: AMO_PEA (Primary amine oxidase OS=Pisum sativum PE=1 SV=1)

HSP 1 Score: 246.899 bits (629), Expect = 1.210e-64
Identity = 117/207 (56.52%), Postives = 142/207 (68.60%), Query Frame = -1
Query:  296 HDHFLNYYLDLDIDGYANSFEKTKLVTRRNTKANTPRKSY*TVEKETAKTEFEARLKLDTKPMEFAMVNPNKKTKIGHXXXXXXXXXXXXXXXLTDDDYPQIRAGFTDYNIWVTPYNKSEKYSGGNYVDQSHGDDTLLQCTDGNREIENKDIVLWYTMGIHHAPCQEDFPVMPTVSGGFELRPTNFFEYNPVLKVIPPKHVQWPNCT 916
            HDHF  YYLD DIDG  NSFEKT L T R    ++ RKSY T E +TAKTE +A++ +   P E  +VNPN KT +G+               LT+DDYPQIR  FT+YN+WVT YN++EK++GG YVD S GDDTL   T  NREI NKDIV+W+ +GIHH P QEDFP+MP +S  FELRPTNFFE NPVLK + P+ V WP C+
Sbjct:  467 HDHFYIYYLDFDIDGTHNSFEKTSLKTVRIKDGSSKRKSYWTTETQTAKTESDAKITIGLAPAELVVVNPNIKTAVGNEVGYRLIPAIPAHPLLTEDDYPQIRGAFTNYNVWVTAYNRTEKWAGGLYVDHSRGDDTLAVWTKQNREIVNKDIVMWHVVGIHHVPAQEDFPIMPLLSTSFELRPTNFFERNPVLKTLSPRDVAWPGCS 673          
BLAST of CX671540 vs. ExPASy Swiss-Prot
Match: AMO_ARATH (Primary amine oxidase OS=Arabidopsis thaliana GN=At1g62810 PE=2 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 9.607e-54
Identity = 107/208 (51.44%), Postives = 135/208 (64.90%), Query Frame = -1
Query:  299 HDHFLNYYLDLDIDG-YANSFEKTKLVTRRNTKANTPRKSY*TVEKETAKTEFEARLKLDT-KPMEFAMVNPNKKTKIGHXXXXXXXXXXXXXXXLTDDDYPQIRAGFTDYNIWVTPYNKSEKYSGGNYVDQSHGDDTLLQCTDGNREIENKDIVLWYTMGIHHAPCQEDFPVMPTVSGGFELRPTNFFEYNPVLKVIPPKHVQWPNC 916
            HDHF+ ++LD+DIDG   NS  K  L  +R     +PRKSY  V+K  AKTE +A++KL    P EF +VNPN+K+++G+               L  DD PQIR  FT+  IWVTPYN+SE+Y+GG  + QS GDDTL   +D +R IENKDIVLWYT+G HH PCQED+PVMPTV+  FEL+P NFFE NP+L   P      P C
Sbjct:  499 HDHFITFHLDMDIDGPMNNSLVKVHLEKQRVPTGKSPRKSYLKVKKYIAKTEKDAQIKLSLYDPYEFHIVNPNRKSRVGNPAGYRIVPGGNAASLLDHDDPPQIRGAFTNNQIWVTPYNRSEQYAGGVLIYQSQGDDTLQVWSDRDRSIENKDIVLWYTLGFHHVPCQEDYPVMPTVAASFELKPANFFESNPILGSAPFFEKDLPVC 706          
BLAST of CX671540 vs. ExPASy Swiss-Prot
Match: AMOH_ARTGO (Histamine oxidase OS=Arthrobacter globiformis PE=1 SV=3)

HSP 1 Score: 103.99 bits (258), Expect = 1.266e-21
Identity = 62/196 (31.63%), Postives = 96/196 (48.98%), Query Frame = -1
Query:  332 HDHFLNYYLDLDIDGYANSFEKTKLVTRRNTKANTPRKSY*TVEKETAKTEFEARLKLD-TKPMEFAMVNPNKKTKIGHXXXXXXXXXXXXXXXLTDDDYPQIRAGFTDYNIWVTPYNKSEKYSGGNYVDQSHGDDTLLQCTDGNREIENKDIVLWYTMGIHHAPCQEDFPVMPTVSGGFELRPTNFFEYNPVLKV 916
            H H  +  LD+ IDG AN  E+  LV       N P  +  T ++     E EA    D  K   + + NP+    +GH               + DD     RA F  +++WVT + + E Y+ G++V+Q  G   L      +R+I+ +D+V+W++ G+ H P  ED+P+MP  + GF L+P  FF+ NP L V
Sbjct:  451 HQHLFSARLDMMIDGDANRVEELDLVRLPKGPGN-PHGNAFTQKRTLLARESEAVRDADGAKGRVWHISNPDSLNHLGHPVGYTLYPEGNPTLAMADDSSIASRAAFARHHLWVTRHAEEELYAAGDFVNQHPGGAVLPAYVAQDRDIDGQDLVVWHSFGLTHFPRPEDWPIMPVDTTGFTLKPHGFFDENPTLNV 645          
BLAST of CX671540 vs. ExPASy Swiss-Prot
Match: AMO2_ARTS1 (Copper methylamine oxidase OS=Arthrobacter sp. (strain P1) GN=maoII PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.072e-20
Identity = 58/196 (29.59%), Postives = 91/196 (46.43%), Query Frame = -1
Query:  332 HDHFLNYYLDLDIDGYANSFEKTKLVTRRNTKANTPRKSY*TVEKETAKTEFEARLKLDTKPMEFAMVNPNKKTKIGHXXXXXXXXXXXXXXXLTDDDYPQIRAGFTDYNIWVTPYNKSEKYSGGNYVDQSHG-DDTLLQCTDGNREIENKDIVLWYTMGIHHAPCQEDFPVMPTVSGGFELRPTNFFEYNPVLKV 916
            H H  N  +D ++DG  N+  +  +    +    T   ++  V++     +   R   + K   + + N   K  +                   DD Y   RA F   N+WVT Y+++E+++ G Y +Q+ G DD L   T  +R I + D+V+WYT G+HH    ED+PVMP  + GF L P  FF  NP L +
Sbjct:  436 HQHMFNVRMDFELDGVKNAVYEVDMEYPEHNPTGT---AFMAVDRLLETEQKAIRKTNEAKHRFWKIANHESKNLVNEPVAYRLIPTNGIQLAARDDAYVSKRAQFARNNLWVTAYDRTERFAAGEYPNQATGADDGLHIWTQKDRNIVDTDLVVWYTFGMHHVVRLEDWPVMPRQNIGFMLEPHGFFNQNPTLNL 628          
BLAST of CX671540 vs. ExPASy Swiss-Prot
Match: AMO1_ARTS1 (Primary amine oxidase OS=Arthrobacter sp. (strain P1) GN=maoI PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.072e-20
Identity = 58/196 (29.59%), Postives = 91/196 (46.43%), Query Frame = -1
Query:  332 HDHFLNYYLDLDIDGYANSFEKTKLVTRRNTKANTPRKSY*TVEKETAKTEFEARLKLDTKPMEFAMVNPNKKTKIGHXXXXXXXXXXXXXXXLTDDDYPQIRAGFTDYNIWVTPYNKSEKYSGGNYVDQSHG-DDTLLQCTDGNREIENKDIVLWYTMGIHHAPCQEDFPVMPTVSGGFELRPTNFFEYNPVLKV 916
            H H  N  +D ++DG  N+  +  +    +    T   ++  V++     +   R   + K   + + N   K  +                   DD Y   RA F   N+WVT Y+++E+++ G Y +Q+ G DD L   T  +R I + D+V+WYT G+HH    ED+PVMP  + GF L P  FF  NP L +
Sbjct:  436 HQHMFNVRMDFELDGVKNAVYEVDMEYPEHNPTGT---AFMAVDRLLETEQKAIRKTNEAKHRFWKIANHESKNLVNEPVAYRLIPTNGIQLAARDDAYVSKRAQFARNNLWVTAYDRTERFAAGEYPNQATGADDGLHIWTQKDRNIVDTDLVVWYTFGMHHVVRLEDWPVMPRQNIGFMLEPHGFFNQNPTLNL 628          
BLAST of CX671540 vs. ExPASy Swiss-Prot
Match: PAOX_ARTGO (Phenylethylamine oxidase OS=Arthrobacter globiformis PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 4.074e-20
Identity = 63/210 (30.00%), Postives = 97/210 (46.19%), Query Frame = -1
Query:  293 HDHFLNYYLDLDIDGYANSFEKTKLVTRRNTKANTPRKSY*TVEKETAKT-EFEARLKLDTKP-MEFAMVNPNKKTKIGHXXXXXXXXXXXXXXXLTDDDYPQIRAGFTDYNIWVTPYNKSEKYSGGNYVDQSHGDDTLLQCTDGNREIENKDIVLWYTMGIHHAPCQEDFPVMPTVSGGFELRPTNFFEYNPVLKVIPPKHVQWPNCTG 916
            H H  +  LD+ IDG+ N  E+  +V +     N    ++    K T  T E EA  + D +    + + NP  K ++                          RA F   ++WVT Y   E+Y  G++V+Q  G   L      +R+I+ +DIV+W+T G+ H P  ED+P+MP  + GF+LRP  FF+ +PVL V         +C G
Sbjct:  431 HQHIFSARLDMAIDGFTNRVEEEDVVRQTMGPGNERGNAF--SRKRTVLTRESEAVREADARTGRTWIISNPESKNRLNEPVGYKLHAHNQPTLLADPGSSIARRAAFATKDLWVTRYADDERYPTGDFVNQHSGGAGLPSYIAQDRDIDGQDIVVWHTFGLTHFPRVEDWPIMPVDTVGFKLRPEGFFDRSPVLDVPANPSQSGSHCHG 638          
BLAST of CX671540 vs. ExPASy Swiss-Prot
Match: AMO_ECOLI (Primary amine oxidase OS=Escherichia coli (strain K12) GN=tynA PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 6.949e-20
Identity = 63/199 (31.66%), Postives = 92/199 (46.23%), Query Frame = -1
Query:  338 HDHFLNYYLDLDIDGYANSFEKTKLVTRRNTKANTPRKSY*TVEKETAKTEFEARLKLDTKPMEFAMVNPNKKTKIGHXXXXXXXXXXXXXXXLTD------DDYPQIRAGFTDYNIWVTPYNKSEKYSGGNYVDQSHGDDTLLQCTDGNREIENKDIVLWYTMGIHHAPCQEDFPVMPTVSGGFELRPTNFFEYNPVL 916
            H H  N+ LDLD+DG  NS      V + NT A  PR S   V +     E +A  K D   +   + NPNK+ ++G+               +        D++   R  F D  +WVT Y+  E++  G Y ++S  D  L Q +  N  ++N D V+W T G  H    E++P+MPT      L+P NFF+  P L
Sbjct:  554 HQHIYNFRLDLDVDGENNSLVAMDPVVKPNT-AGGPRTSTMQVNQYNIGNEQDAAQKFDPGTIRL-LSNPNKENRMGNPVSYQIIPYAGGTHPVAKGAQFAPDEWIYHRLSFMDKQLWVTRYHPGERFPEGKYPNRSTHDTGLGQYSKDNESLDNTDAVVWMTTGTTHVARAEEWPIMPTEWVHTLLKPWNFFDETPTL 750          
BLAST of CX671540 vs. ExPASy Swiss-Prot
Match: AMO_KLEAE (Primary amine oxidase OS=Klebsiella aerogenes GN=maoA PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.892e-17
Identity = 60/199 (30.15%), Postives = 90/199 (45.23%), Query Frame = -1
Query:  338 HDHFLNYYLDLDIDGYANSFEKTKLVTRRNTKANTPRKSY*TVEKETAKTEFEARLKLDTKPMEFAMVNPNKKTKIGHXXXXXXXXXXXXXXXLTD------DDYPQIRAGFTDYNIWVTPYNKSEKYSGGNYVDQSHGDDTLLQCTDGNREIENKDIVLWYTMGIHHAPCQEDFPVMPTVSGGFELRPTNFFEYNPVL 916
            H H  N+ LDLD+DG  N+        + NT A  PR S   V + T  +E +A  K D   +   + N +K+ ++G+                        D++   R  F D  +WVT Y+ +E+Y  G Y ++S  D  L Q    +  + N D V+W T G  H    E++P+MPT      L+P NFF+  P L
Sbjct:  554 HQHIYNFRLDLDVDGENNTLVAMDPEVKPNT-AGGPRTSTMQVNQYTIDSEQKAAQKFDPGTIRL-LSNTSKENRMGNPVSYQIIPYAGGTHPAATGAKFAPDEWIYHRLSFMDKQLWVTRYHPTERYPEGKYPNRSAHDTGLGQYAKDDESLTNHDDVVWITTGTTHVARAEEWPIMPTEWALALLKPWNFFDETPTL 750          
BLAST of CX671540 vs. ExPASy Swiss-Prot
Match: AMOH2_SCHPO (Putative primary amine oxidase 2 OS=Schizosaccharomyces pombe GN=SPAC2E1P3.04 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 5.506e-17
Identity = 67/210 (31.90%), Postives = 93/210 (44.29%), Query Frame = -1
Query:  314 HDHFLNYYLDLDIDGYANSFEKTKLVT---RRNTKANTPRKSY*TVEKETAKTEFEARLKLDTKPME-FAMVNPNKKTKI-GHXXXXXXXXXXXXXXXLTDDDYPQIRAGFTDYNIWVTPYNKSEKYSGGNYVDQSHGDDTL----LQCTDGNREIENKDIVLWYTMGIHHAPCQEDFPVMPTVSGGFELRPTNFFEYNPVLKVIPPKHV 916
            H H     L+  +DGY+NS      V+      +K N    ++ T E+   KT  EA    ++     + + NPNK     G                         RAGF  ++I VTPY   + Y  G+YV Q+ G+ T         + +  ++N DIV+W+T GI H P  EDFP+MP       LRP NFF  NP L V P K+V
Sbjct:  458 HQHLFCLRLNPMLDGYSNSVAVVDGVSGPGEPGSKENYYGNAF-TTERTVPKTVKEAICDYNSDTSRTWDICNPNKLHPYSGKPVSYKLVSRETPRLMARPGSLVSNRAGFARHHIHVTPYKDGQIYPAGDYVPQTSGEPTKGLPEWIAEEPDASVDNTDIVVWHTFGITHFPAPEDFPLMPAEPIRLLLRPRNFFLRNPALDVPPSKNV 666          
The following BLAST results are available for this feature:
BLAST of CX671540 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
AMO_LENCU4.911e-6657.00Primary amine oxidase (Fragment) OS=Lens culinaris... [more]
AMO_PEA1.210e-6456.52Primary amine oxidase OS=Pisum sativum PE=1 SV=1[more]
AMO_ARATH9.607e-5451.44Primary amine oxidase OS=Arabidopsis thaliana GN=A... [more]
AMOH_ARTGO1.266e-2131.63Histamine oxidase OS=Arthrobacter globiformis PE=1... [more]
AMO2_ARTS11.072e-2029.59Copper methylamine oxidase OS=Arthrobacter sp. (st... [more]
AMO1_ARTS11.072e-2029.59Primary amine oxidase OS=Arthrobacter sp. (strain ... [more]
PAOX_ARTGO4.074e-2030.00Phenylethylamine oxidase OS=Arthrobacter globiform... [more]
AMO_ECOLI6.949e-2031.66Primary amine oxidase OS=Escherichia coli (strain ... [more]
AMO_KLEAE1.892e-1730.15Primary amine oxidase OS=Klebsiella aerogenes GN=m... [more]
AMOH2_SCHPO5.506e-1731.90Putative primary amine oxidase 2 OS=Schizosaccharo... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_11F10_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-11F10-L19-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671540 ID=CX671540; Name=CX671540; organism=Citrus sinensis; type=EST; length=916bp
TTTTTTATTGACTGTTTGTCTGTAAAGAGCAAGAGTCTTGAGTTTATTCT
ATTTAAAACGCAGCAGTAAAATCAAGCCAAATAACAAAGGCCTTGATCAA
AAACTTGATACAAACAAGAAGAAAAATTCAGACAGAAACTGAGGGGCATG
AATATAAAATGTGTTTTTGAAGTAGAAATAAACAACAGATGCCTTGACCA
TTGTTGGTAGTTCAGGTATCACACACACTTGTTTTAAATGGCATCAAATA
AATTTACCACCAAATATTTAAAGTAGAAACTGGCTGGTGTTTGCCGGTGC
AATTAGGCCATTGTACGTGCTTCGGAGGAATCACTTTAAGCACTGGATTA
TATTCAAAGAAATTAGTTGGTCGGAGCTCGAATCCACCACTCACTGTTGG
CATCACCGGAAAATCTTCCTGGCAAGGAGCATGATGAATGCCCATAGTGT
ACCAAAGTACTATATCCTTGTTCTCAATCTCCCTATTCCCGTCAGTACAT
TGCAATAAGGTATCATCACCATGGCTTTGATCAACATAGTTTCCTCCTGA
ATATTTTTCTGACTTGTTATATGGGGTAACCCAAATATTATAATCAGTGA
AGCCGGCTCGGATTTGTGGATAATCATCATCCGTTAGCAGCGGACCTACG
ACTAATCCTGGAAGCAGGCGATAGCCAACAGGGTGCCCAATTTTAGTTTT
CTTATTTGGATTCACCATTGCAAATTCCATTGGCTTTGTGTCAAGCTTAA
GCCGAGCTTCAAATTCAGTCTTAGCTGTTTCTTTTTCAACAGTCTAATAA
CTCTTTCTTGGTGTATTAGCTTTTGTGTTTCGCCTGGTAACCAATTTGGT
CTTCTCAAAGGAATTGGCATAACCATCAATATCAAGATCAAGATAATAGT
TCAAGAAGTGATCGTG
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