CX671506

Overview
NameCX671506
Unique NameCX671506
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length529
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX671506_ssr13 microsatellite CX671506_ssr13:13..24. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX671506 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 5.651e-20
Identity = 51/87 (58.62%), Postives = 58/87 (66.67%), Query Frame = 1 
Query:   76 IGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFXXXXXXXXXXXXXXXXXXXNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTG 336
            +G  EMLG PLN  +  R+SAP AS+PSTFK VALF                   ++ELAKWYGPDRRIFLP+GLLDRSEIPEYL G
Sbjct:    4 LGVSEMLGTPLNFRAVSRSSAPLASSPSTFKTVALFSKKKPAPAKSKAVSET---SDELAKWYGPDRRIFLPDGLLDRSEIPEYLNG 87
The following BLAST results are available for this feature:
BLAST of CX671506 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
CB26_ARATH5.651e-2058.62Chlorophyll a-b binding protein CP26, chloroplasti... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS10_11E03_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-11E03-J5-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671506 ID=CX671506; Name=CX671506; organism=Citrus sinensis; type=EST; length=529bp
CTAACACAAAGAAGCAGCAGCAGCAACACTCTGAAGATGGCTTCATTGGC
AGCATCGTCCACTCCTGCTGCCTCCATTGGAGCTAAGGAGATGCTTGGCA
ACCCTCTCAATGTCAGCAGTGCTGTTAGGACTTCAGCTCCAGGTGCATCA
AACCCTTCTACTTTCAAGCCCGTTGCTCTCTTCTCCAAGAAGAAAGCCGC
CCCTCCTGCCAAGTCTAAGCCCGTCGCCGTCTCCCCCGTTAACGAAGAGC
TCGCCAAGTGGTATGGTCCTGACCGAAGAATTTTCTTGCCCGAGGGTCTC
TTGGACAGATCTGAGATCCCTGAGTACTTGACCGGAAACGCAGAGAGAGC
TCCCACCCTGTGATTTCAGTTGTTCTGGTGTTCTTTTCACTCGAATCTAA
AATGCATTGTACATCTCATCATCAAGACATTTCCAAGATGTTGAAACCTT
AAATGATCATGGCACTCGAATCCCTACTCTCTGAGTTATAGAGCTTGAGT
GTTATTCACCTATAAAAAAAAAAAAAAAA
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