CX671501

Overview
NameCX671501
Unique NameCX671501
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length787
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX671501_ssr59 microsatellite CX671501_ssr59:59..76. BLAST: Citrus ESTs to Prunus persica proteins V1
CX671501_ssr140 microsatellite CX671501_ssr140:140..154. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX671501 vs. ExPASy Swiss-Prot
Match: BRI1_ARATH (Protein BRASSINOSTEROID INSENSITIVE 1 OS=Arabidopsis thaliana GN=BRI1 PE=1 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 4.007e-31
Identity = 76/184 (41.30%), Postives = 105/184 (57.07%), Query Frame = 2
Query:  239 KDLQQLLSFKAALPNPSVLPNWSPNQNPCGFKGVSCKAASVSSIDLSPFTLSVDFHLVASFXXXXXXXXXXXXKNSNISGTISLPAGXXXXXXXXXXXXXXXXXXGPLSDISYLGSCXXXXXXXXXXXXXXXXGREAGSLKL-SLEVLDLSYNKISGANVVPWILFNGCDELKQLALKGNKVTG 787
            +++ QL+SFK  LP+ ++LP+WS N+NPC F GV+C+   V+SIDLS   L+V F  V+S              NS+I+G++S   G                  GP++ ++ LGSC                G+ +G LKL SLEVLDLS N ISGANVV W+L +GC ELK LA+ GNK++G
Sbjct:   34 REIHQLISFKDVLPDKNLLPDWSSNKNPCTFDGVTCRDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS---GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISG 214          
BLAST of CX671501 vs. ExPASy Swiss-Prot
Match: BRI1_SOLLC (Brassinosteroid LRR receptor kinase OS=Solanum lycopersicum GN=CURL3 PE=1 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.597e-30
Identity = 80/185 (43.24%), Postives = 99/185 (53.51%), Query Frame = 2
Query:  239 KDLQQLLSFKAALP-NPSVLPNWSPNQNPCGFKGVSCKAASVSSIDLSPFTLSVDFHLVASFXXXXXXXXXXXXKNSNISGTISLPAGXXXXXXXXXXXXXXXXXXGPLSDISYLGSCXXXXXXXXXXXXXXXXGRE-AGSLKLSLEVLDLSYNKISGANVVPWILFNGCDELKQLALKGNKVTG 787
            KD QQLLSFKAALP  P++L NW  +  PC F GVSCK + VSSIDLS   LSVDF LV S+            KN+N+SG+++  A                   GP+SDIS  G C                G+E   +   SL+VLDLSYN ISG N+ PW+   G  EL+  +LKGNK+ G
Sbjct:   42 KDSQQLLSFKAALPPTPTLLQNWLSSTGPCSFTGVSCKNSRVSSIDLSNTFLSVDFSLVTSYLLPLSNLESLVLKNANLSGSLTSAAKSQCGVTLDSIDLAENTISGPISDISSFGVCSNLKSLNLSKNFLDPPGKEMLKAATFSLQVLDLSYNNISGFNLFPWVSSMGFVELEFFSLKGNKLAG 226          
BLAST of CX671501 vs. ExPASy Swiss-Prot
Match: BRI1_SOLPE (Systemin receptor SR160 OS=Solanum peruvianum PE=1 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 4.430e-30
Identity = 79/185 (42.70%), Postives = 99/185 (53.51%), Query Frame = 2
Query:  239 KDLQQLLSFKAALP-NPSVLPNWSPNQNPCGFKGVSCKAASVSSIDLSPFTLSVDFHLVASFXXXXXXXXXXXXKNSNISGTISLPAGXXXXXXXXXXXXXXXXXXGPLSDISYLGSCXXXXXXXXXXXXXXXXGRE-AGSLKLSLEVLDLSYNKISGANVVPWILFNGCDELKQLALKGNKVTG 787
            KD QQLLSFKAALP  P++L NW  + +PC F GVSCK + VSSIDLS   LSVDF LV S+            KN+N+SG+++  A                   GP+SDIS  G C                G+E       SL+VLDLSYN ISG N+ PW+   G  EL+  ++KGNK+ G
Sbjct:   42 KDSQQLLSFKAALPPTPTLLQNWLSSTDPCSFTGVSCKNSRVSSIDLSNTFLSVDFSLVTSYLLPLSNLESLVLKNANLSGSLTSAAKSQCGVTLDSIDLAENTISGPISDISSFGVCSNLKSLNLSKNFLDPPGKEMLKGATFSLQVLDLSYNNISGFNLFPWVSSMGFVELEFFSIKGNKLAG 226          
The following BLAST results are available for this feature:
BLAST of CX671501 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
BRI1_ARATH4.007e-3141.30Protein BRASSINOSTEROID INSENSITIVE 1 OS=Arabidops... [more]
BRI1_SOLLC2.597e-3043.24Brassinosteroid LRR receptor kinase OS=Solanum lyc... [more]
BRI1_SOLPE4.430e-3042.70Systemin receptor SR160 OS=Solanum peruvianum PE=1... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS10_11D12_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-11D12-H23-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671501 ID=CX671501; Name=CX671501; organism=Citrus sinensis; type=EST; length=787bp
CACATCTTGATAAATACCCTTCTTACCTTCCTTGTTCCGTCTTTTGACTC
TCCCTGTATTCTTCTTCTTCTTCTTCAGTAAAACAAGTAAACTGAAATGA
AAGCTTTCAAACCCTAAATGCTTTTCTTTGTATGAACCTACAACAACAAC
AACAAAAATGAAAGCTTTCTCTCTTCTCTTCCTTGTTTTCTCCTCCTTCA
TCTCACTCTCTCTTCTAGCCTCTGCCTCCTCCCCAAACAAGGACTTGCAG
CAGCTTCTTAGCTTCAAGGCTGCATTACCAAACCCTTCAGTGCTTCCAAA
CTGGTCACCTAACCAGAACCCATGTGGGTTTAAAGGTGTTTCATGCAAAG
CAGCTTCTGTTTCTTCCATAGACTTGAGCCCCTTTACTTTGAGTGTTGAT
TTTCACCTTGTTGCTTCTTTTCTCTTGACTCTAGATACCCTTGAAACTCT
CTCTTTGAAAAATAGTAACATTTCTGGCACCATTTCTTTGCCTGCTGGAT
CTAGGTGCAGCTCATTTTTGAGCTCATTAGATCTGTCTTTAAACATTCTG
TCCGGTCCTTTGTCTGATATTTCCTATCTGGGTTCTTGTTCAAGCTTGAA
ATTCTTGAACTTGTCAAGTAATCTACTTGATTTTTCAGGGAGAGAGGCTG
GTAGCTTGAAGCTCAGTTTAGAGGTGCTTGATCTTTCTTACAATAAGATT
TCAGGTGCCAACGTTGTGCCTTGGATTTTGTTCAATGGTTGTGATGAGTT
AAAGCAGTTGGCTTTGAAGGGGAACAAAGTTACTGGT
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