CX671498 | Citrus Genome Database

Overview


Name	CX671498
Unique Name	CX671498
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	599

Libraries


Library Name	Type
Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CX671498 vs. ExPASy Swiss-Prot
Match: NH2L1_CAEEL (NHP2-like protein 1 homolog OS=Caenorhabditis elegans GN=M28.5 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.893e-40
Identity = 49/70 (70.00%), Postives = 56/70 (80.00%), Query Frame = -2

Query:  368 MSGESVNSKAYPLADSHLTITLMDLVQQAANYKLLKKGANEATKTLNKGTSEFIVMAADTEPLEIFFIFP 577
            M+ + VN KA+PLAD++L+  LMDLVQQA NYK LKKGANEATKTLN+G SE IVMAAD EPLEI    P
Sbjct:    1 MADDGVNPKAFPLADTNLSQKLMDLVQQAMNYKQLKKGANEATKTLNRGISEIIVMAADAEPLEILLHLP 70

HSP 2 Score: 88.9669 bits (219), Expect = 3.893e-40
Identity = 42/55 (76.36%), Postives = 49/55 (89.09%), Query Frame = -1

Query:  195 EDKNVPYVFVPSKQALGRACGVTRPVVACSVTSNEASQLKTQIQQLKDAIEKLLI 359
            EDKNVPYVFV SK ALGRACGVTRPV+A S+T NE SQLK+QIQ++K+ +EKLLI
Sbjct:   74 EDKNVPYVFVRSKAALGRACGVTRPVIAASITQNEGSQLKSQIQKIKEDVEKLLI 128

[Close]

BLAST of CX671498 vs. ExPASy Swiss-Prot
Match: SNU13_SCHPO (13 kDa ribonucleoprotein-associated protein OS=Schizosaccharomyces pombe GN=snu13 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 4.222e-39
Identity = 48/66 (72.73%), Postives = 56/66 (84.85%), Query Frame = -2

Query:  368 SVNSKAYPLADSHLTITLMDLVQQAANYKLLKKGANEATKTLNKGTSEFIVMAADTEPLEIFFIFP 565
            SVN KA+PLADS LT  ++DLVQQA++YK L+KGANEATKTLN+G SEFIVMAADTEP+EI    P
Sbjct:    2 SVNPKAFPLADSGLTQQILDLVQQASHYKQLRKGANEATKTLNRGISEFIVMAADTEPIEILLHLP 67

HSP 2 Score: 85.8853 bits (211), Expect = 4.222e-39
Identity = 42/55 (76.36%), Postives = 48/55 (87.27%), Query Frame = -1

Query:  195 EDKNVPYVFVPSKQALGRACGVTRPVVACSVTSNEASQLKTQIQQLKDAIEKLLI 359
            EDKNVPYVFVPSK ALGRACGV+RPV++ S+T+NEAS L  QIQ +K AIEKLLI
Sbjct:   71 EDKNVPYVFVPSKAALGRACGVSRPVISASITTNEASDLLPQIQAIKLAIEKLLI 125

[Close]

BLAST of CX671498 vs. ExPASy Swiss-Prot
Match: SNU13_YARLI (13 kDa ribonucleoprotein-associated protein OS=Yarrowia lipolytica GN=SNU13 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.791e-37
Identity = 43/55 (78.18%), Postives = 50/55 (90.91%), Query Frame = -1

Query:  195 EDKNVPYVFVPSKQALGRACGVTRPVVACSVTSNEASQLKTQIQQLKDAIEKLLI 359
            EDKNVPY+FVPSK ALGRACGV+RPV++ SVTSN+ASQLK QI Q+KD IE+LLI
Sbjct:   72 EDKNVPYIFVPSKVALGRACGVSRPVISASVTSNDASQLKDQIIQMKDKIERLLI 126

HSP 2 Score: 85.8853 bits (211), Expect = 3.791e-37
Identity = 41/64 (64.06%), Postives = 51/64 (79.69%), Query Frame = -2

Query:  368 NSKAYPLADSHLTITLMDLVQQAANYKLLKKGANEATKTLNKGTSEFIVMAADTEPLEIFFIFP 559
            N KA+PLAD+ LT  ++D+VQQA + + LKKGANEATKTLN+G SEFI+MAAD EP+EI    P
Sbjct:    5 NPKAFPLADAALTQQILDIVQQATHLRQLKKGANEATKTLNRGISEFIIMAADAEPIEILLHLP 68

[Close]

BLAST of CX671498 vs. ExPASy Swiss-Prot
Match: SNU13_CANAL (13 kDa ribonucleoprotein-associated protein OS=Candida albicans GN=SNU13 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 4.939e-37
Identity = 43/64 (67.19%), Postives = 52/64 (81.25%), Query Frame = -2

Query:  368 NSKAYPLADSHLTITLMDLVQQAANYKLLKKGANEATKTLNKGTSEFIVMAADTEPLEIFFIFP 559
            N KA+PLADS LT  ++D+VQQ+ N + LKKGANEATKTLN+G SEFI+MAADTEP+EI    P
Sbjct:    5 NPKAFPLADSALTQQILDVVQQSQNLRQLKKGANEATKTLNRGISEFIIMAADTEPIEILLHLP 68

HSP 2 Score: 86.6557 bits (213), Expect = 4.939e-37
Identity = 42/55 (76.36%), Postives = 47/55 (85.45%), Query Frame = -1

Query:  195 EDKNVPYVFVPSKQALGRACGVTRPVVACSVTSNEASQLKTQIQQLKDAIEKLLI 359
            EDKNVPYVFVPSK ALGRACGV+RPV+A SVTSN+AS +K QI  +KD IE LLI
Sbjct:   72 EDKNVPYVFVPSKAALGRACGVSRPVIAASVTSNDASSIKNQIYGIKDKIETLLI 126

[Close]

BLAST of CX671498 vs. ExPASy Swiss-Prot
Match: SNU13_DEBHA (13 kDa ribonucleoprotein-associated protein OS=Debaryomyces hansenii GN=SNU13 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 6.435e-37
Identity = 43/64 (67.19%), Postives = 52/64 (81.25%), Query Frame = -2

Query:  368 NSKAYPLADSHLTITLMDLVQQAANYKLLKKGANEATKTLNKGTSEFIVMAADTEPLEIFFIFP 559
            N KA+PLADS LT  ++D+VQQ+ N + LKKGANEATKTLN+G SEFI+MAADTEP+EI    P
Sbjct:    5 NPKAFPLADSALTQQILDVVQQSQNLRQLKKGANEATKTLNRGISEFIIMAADTEPIEILLHLP 68

HSP 2 Score: 86.2705 bits (212), Expect = 6.435e-37
Identity = 42/55 (76.36%), Postives = 47/55 (85.45%), Query Frame = -1

Query:  195 EDKNVPYVFVPSKQALGRACGVTRPVVACSVTSNEASQLKTQIQQLKDAIEKLLI 359
            EDKNVPYVFVPSK ALGRACGV+RPV+A SVT+NEAS +K QI  +KD IE LLI
Sbjct:   72 EDKNVPYVFVPSKTALGRACGVSRPVIAASVTTNEASAMKNQIYGIKDKIETLLI 126

[Close]

BLAST of CX671498 vs. ExPASy Swiss-Prot
Match: SNU13_USTMA (13 kDa ribonucleoprotein-associated protein OS=Ustilago maydis GN=SNU13 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.383e-37
Identity = 43/64 (67.19%), Postives = 52/64 (81.25%), Query Frame = -2

Query:  368 NSKAYPLADSHLTITLMDLVQQAANYKLLKKGANEATKTLNKGTSEFIVMAADTEPLEIFFIFP 559
            N KA+PLAD+ LT  ++DL+QQA++YK LKKGANEATKTLN+G  EFIVMAAD EP+EI    P
Sbjct:    5 NPKAFPLADATLTNQILDLIQQASHYKQLKKGANEATKTLNRGICEFIVMAADVEPIEIVLHLP 68

HSP 2 Score: 85.8853 bits (211), Expect = 8.383e-37
Identity = 42/55 (76.36%), Postives = 50/55 (90.91%), Query Frame = -1

Query:  195 EDKNVPYVFVPSKQALGRACGVTRPVVACSVTSNEASQLKTQIQQLKDAIEKLLI 359
            EDKNVPYVFVPSK ALGRACGV+RPVV+ SVT+NEA +L++QIQ +K AIE+LLI
Sbjct:   72 EDKNVPYVFVPSKTALGRACGVSRPVVSASVTTNEARELQSQIQTVKLAIERLLI 126

[Close]

BLAST of CX671498 vs. ExPASy Swiss-Prot
Match: SNU13_YEAST (13 kDa ribonucleoprotein-associated protein OS=Saccharomyces cerevisiae GN=SNU13 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.854e-36
Identity = 43/64 (67.19%), Postives = 52/64 (81.25%), Query Frame = -2

Query:  368 NSKAYPLADSHLTITLMDLVQQAANYKLLKKGANEATKTLNKGTSEFIVMAADTEPLEIFFIFP 559
            N KA+PLAD+ LT  ++D+VQQAAN + LKKGANEATKTLN+G SEFI+MAAD EP+EI    P
Sbjct:    5 NPKAFPLADAALTQQILDVVQQAANLRQLKKGANEATKTLNRGISEFIIMAADCEPIEILLHLP 68

HSP 2 Score: 85.1149 bits (209), Expect = 1.854e-36
Identity = 40/55 (72.73%), Postives = 48/55 (87.27%), Query Frame = -1

Query:  195 EDKNVPYVFVPSKQALGRACGVTRPVVACSVTSNEASQLKTQIQQLKDAIEKLLI 359
            EDKNVPYVFVPS+ ALGRACGV+RPV+A S+T+N+AS +KTQI  +KD IE LLI
Sbjct:   72 EDKNVPYVFVPSRVALGRACGVSRPVIAASITTNDASAIKTQIYAVKDKIETLLI 126

[Close]

BLAST of CX671498 vs. ExPASy Swiss-Prot
Match: SNU13_CRYNE (13 kDa ribonucleoprotein-associated protein OS=Cryptococcus neoformans GN=SNU13 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 9.041e-36
Identity = 41/55 (74.55%), Postives = 48/55 (87.27%), Query Frame = -1

Query:  195 EDKNVPYVFVPSKQALGRACGVTRPVVACSVTSNEASQLKTQIQQLKDAIEKLLI 359
            EDKNVPYVF+PSK ALGRACGV+RPV+A SVT+NEA +L  QIQ +K+ IEKLLI
Sbjct:   73 EDKNVPYVFLPSKTALGRACGVSRPVIAASVTTNEARELNAQIQAVKNEIEKLLI 127

HSP 2 Score: 85.5001 bits (210), Expect = 9.041e-36
Identity = 41/64 (64.06%), Postives = 50/64 (78.12%), Query Frame = -2

Query:  368 NSKAYPLADSHLTITLMDLVQQAANYKLLKKGANEATKTLNKGTSEFIVMAADTEPLEIFFIFP 559
            N KA+PLA++ LT  ++DL+QQA +YK LKKGANEATKTLN+G  EFIVM AD EP+EI    P
Sbjct:    6 NPKAFPLANAQLTNQILDLIQQAQHYKQLKKGANEATKTLNRGICEFIVMTADVEPIEIVLHLP 69

[Close]

BLAST of CX671498 vs. ExPASy Swiss-Prot
Match: SNU13_ASHGO (13 kDa ribonucleoprotein-associated protein OS=Ashbya gossypii GN=SNU13 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.178e-35
Identity = 42/64 (65.62%), Postives = 52/64 (81.25%), Query Frame = -2

Query:  368 NSKAYPLADSHLTITLMDLVQQAANYKLLKKGANEATKTLNKGTSEFIVMAADTEPLEIFFIFP 559
            N KA+PLAD+ LT  ++D+VQQA+N + LKKGANEATKTLN+G SEFI+MAAD EP+EI    P
Sbjct:    6 NPKAFPLADAALTQQILDVVQQASNMRQLKKGANEATKTLNRGISEFIIMAADCEPIEILLHLP 69

HSP 2 Score: 83.5741 bits (205), Expect = 1.178e-35
Identity = 39/55 (70.91%), Postives = 48/55 (87.27%), Query Frame = -1

Query:  195 EDKNVPYVFVPSKQALGRACGVTRPVVACSVTSNEASQLKTQIQQLKDAIEKLLI 359
            EDKNVPYVFVPS+ ALGRACGV+RPV+A S+T+N+AS +K+QI  +KD IE LLI
Sbjct:   73 EDKNVPYVFVPSRVALGRACGVSRPVIAASITTNDASAIKSQIYAVKDKIETLLI 127

[Close]

BLAST of CX671498 vs. ExPASy Swiss-Prot
Match: SNU13_CANGA (13 kDa ribonucleoprotein-associated protein OS=Candida glabrata GN=SNU13 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 2.003e-35
Identity = 42/64 (65.62%), Postives = 51/64 (79.69%), Query Frame = -2

Query:  368 NSKAYPLADSHLTITLMDLVQQAANYKLLKKGANEATKTLNKGTSEFIVMAADTEPLEIFFIFP 559
            N KA+PLAD  L+  ++D+VQQAAN + LKKGANEATKTLN+G SEFI+MAAD EP+EI    P
Sbjct:    5 NPKAFPLADEKLSQQILDVVQQAANLRQLKKGANEATKTLNRGISEFIIMAADCEPIEILLHLP 68

HSP 2 Score: 83.1889 bits (204), Expect = 2.003e-35
Identity = 39/55 (70.91%), Postives = 47/55 (85.45%), Query Frame = -1

Query:  195 EDKNVPYVFVPSKQALGRACGVTRPVVACSVTSNEASQLKTQIQQLKDAIEKLLI 359
            EDKNVPYVFVPS+ ALGRACGV+RPV+A S+T+N+AS +K QI  +KD IE LLI
Sbjct:   72 EDKNVPYVFVPSRVALGRACGVSRPVIAASITTNDASAIKNQIYAVKDKIETLLI 126

The following BLAST results are available for this feature:

BLAST of CX671498 vs. ExPASy Swiss-Prot

BLAST of CX671498 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24


Match Name	E-value	Identity	Description
NH2L1_CAEEL	3.893e-40	70.00	NHP2-like protein 1 homolog OS=Caenorhabditis eleg...	[more]
SNU13_SCHPO	4.222e-39	72.73	13 kDa ribonucleoprotein-associated protein OS=Sch...	[more]
SNU13_YARLI	3.791e-37	78.18	13 kDa ribonucleoprotein-associated protein OS=Yar...	[more]
SNU13_CANAL	4.939e-37	67.19	13 kDa ribonucleoprotein-associated protein OS=Can...	[more]
SNU13_DEBHA	6.435e-37	67.19	13 kDa ribonucleoprotein-associated protein OS=Deb...	[more]
SNU13_USTMA	8.383e-37	67.19	13 kDa ribonucleoprotein-associated protein OS=Ust...	[more]
SNU13_YEAST	1.854e-36	67.19	13 kDa ribonucleoprotein-associated protein OS=Sac...	[more]
SNU13_CRYNE	9.041e-36	74.55	13 kDa ribonucleoprotein-associated protein OS=Cry...	[more]
SNU13_ASHGO	1.178e-35	65.63	13 kDa ribonucleoprotein-associated protein OS=Ash...	[more]
SNU13_CANGA	2.003e-35	65.63	13 kDa ribonucleoprotein-associated protein OS=Can...	[more]

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Properties


Property Name	Value
Genbank description	UCRCS10_11D11_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-11D11-H21-6.b, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX671498 ID=CX671498; Name=CX671498; organism=Citrus sinensis; type=EST; length=599bp
TTTTTTAAAACAATTTATGGCATCATTCTCTGGTAAATATAATTCCCAAA
AAAGAAAACATGGGAAATAAGAGTATGGAGATTACTGTTAGATGATTTCC
TAGGGGCACAACTACTTCATCAGTCAAAGCCTCTAAAGGAGTAACCTCCA
TCCAAGAGGCCCATCACACTGAATATGAATCCTCTTATATTTCATATCAA
GAGCTTTTCGATGGCATCCTTCAGTTGTTGAATCTGAGTTTTCAGTTGGC
TAGCCTCATTCGATGTCACAGAGCAAGCAACGACAGGTCTTGTAACCCCA
CATGCTCGGCCAAGAGCTTGTTTTGAAGGGACAAACACATAGGGAACATT
CTTGTCTTCAGCTAGCAGGGGAAGATGAAGAAGATCTCAAGAGGCTCAGT
ATCAGCAGCCATCACAATAAATTCGGAAGTACCCTTGTTAAGAGTCTTGG
TTGCTTCATTGGCGCCCTTTTTGAGGAGCTTGTAGTTGGCAGCTTGTTGA
ACAAGATCCATTAATGTAATTGTCAGATGTGAATCTGCCAATGGGTACGC
CTTCGAGTTTACGGATTCTCCGCTCATTTTCGAGCAGATAACGCAGCCT