CX671495
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX671495 vs. ExPASy Swiss-Prot
Match: PSMD1_PONAB (26S proteasome non-ATPase regulatory subunit 1 OS=Pongo abelii GN=PSMD1 PE=2 SV=1) HSP 1 Score: 330.102 bits (845), Expect = 9.122e-90 Identity = 166/258 (64.34%), Postives = 207/258 (80.23%), Query Frame = 1 Query: 46 EDIYDDIKNVLYTDSAVAGEAAGISMGLLMVGTASEKAGE-MLTYAHETQHEKIIRGLALGIALTVYGREEEADTLIEQMTRDQDPILRYGGMYALALAYSGTANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLSEAISLLEPLTSDVVDFVRQGALIAMAMVMVQINEANDSRVGTFRRQLEKIILDKHEDTMSKMGAILASGILDAGGRNVTIRL 816 +D+YD +K LY D AV GEAAG+++GL+M+G+ + +A E M+ YA ETQHEKI+RGLA+GIAL +YGR EEAD LIE + RD+DPILR GMY +A+AY G+ NNKAIR+LLH AVSDV+DDVRR AV +LGF+L+ PEQ P +VSLLSESYNPHVRYGAA+A+GI CAGTG EAI+LLEP+T+D V++VRQGALIA A++M+Q E +V FR+ K+I DKH+D M+K GAILA GILDAGG NVTI L Sbjct: 491 QDVYDLLKTNLYQDDAVTGEAAGLALGLVMLGSKNAQAIEDMVGYAQETQHEKILRGLAVGIALVMYGRMEEADALIESLCRDKDPILRRSGMYTVAMAYCGSGNNKAIRRLLHVAVSDVNDDVRRAAVESLGFILFRTPEQCPSVVSLLSESYNPHVRYGAAMALGICCAGTGNKEAINLLEPMTNDPVNYVRQGALIASALIMIQQTEITCPKVNQFRQLYSKVINDKHDDVMAKFGAILAQGILDAGGHNVTISL 748
BLAST of CX671495 vs. ExPASy Swiss-Prot
Match: PSMD1_MOUSE (26S proteasome non-ATPase regulatory subunit 1 OS=Mus musculus GN=Psmd1 PE=1 SV=1) HSP 1 Score: 330.102 bits (845), Expect = 9.122e-90 Identity = 166/258 (64.34%), Postives = 207/258 (80.23%), Query Frame = 1 Query: 46 EDIYDDIKNVLYTDSAVAGEAAGISMGLLMVGTASEKAGE-MLTYAHETQHEKIIRGLALGIALTVYGREEEADTLIEQMTRDQDPILRYGGMYALALAYSGTANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLSEAISLLEPLTSDVVDFVRQGALIAMAMVMVQINEANDSRVGTFRRQLEKIILDKHEDTMSKMGAILASGILDAGGRNVTIRL 816 +D+YD +K LY D AV GEAAG+++GL+M+G+ + +A E M+ YA ETQHEKI+RGLA+GIAL +YGR EEAD LIE + RD+DPILR GMY +A+AY G+ NNKAIR+LLH AVSDV+DDVRR AV +LGF+L+ PEQ P +VSLLSESYNPHVRYGAA+A+GI CAGTG EAI+LLEP+T+D V++VRQGALIA A++M+Q E +V FR+ K+I DKH+D M+K GAILA GILDAGG NVTI L Sbjct: 491 QDVYDLLKTNLYQDDAVTGEAAGLALGLVMLGSKNAQAIEDMVGYAQETQHEKILRGLAVGIALVMYGRMEEADALIESLCRDKDPILRRSGMYTVAMAYCGSGNNKAIRRLLHVAVSDVNDDVRRAAVESLGFILFRTPEQCPSVVSLLSESYNPHVRYGAAMALGICCAGTGNKEAINLLEPMTNDPVNYVRQGALIASALIMIQQTEITCPKVNQFRQLYSKVINDKHDDVMAKFGAILAQGILDAGGHNVTISL 748
BLAST of CX671495 vs. ExPASy Swiss-Prot
Match: PSMD1_HUMAN (26S proteasome non-ATPase regulatory subunit 1 OS=Homo sapiens GN=PSMD1 PE=1 SV=2) HSP 1 Score: 330.102 bits (845), Expect = 9.122e-90 Identity = 166/258 (64.34%), Postives = 207/258 (80.23%), Query Frame = 1 Query: 46 EDIYDDIKNVLYTDSAVAGEAAGISMGLLMVGTASEKAGE-MLTYAHETQHEKIIRGLALGIALTVYGREEEADTLIEQMTRDQDPILRYGGMYALALAYSGTANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLSEAISLLEPLTSDVVDFVRQGALIAMAMVMVQINEANDSRVGTFRRQLEKIILDKHEDTMSKMGAILASGILDAGGRNVTIRL 816 +D+YD +K LY D AV GEAAG+++GL+M+G+ + +A E M+ YA ETQHEKI+RGLA+GIAL +YGR EEAD LIE + RD+DPILR GMY +A+AY G+ NNKAIR+LLH AVSDV+DDVRR AV +LGF+L+ PEQ P +VSLLSESYNPHVRYGAA+A+GI CAGTG EAI+LLEP+T+D V++VRQGALIA A++M+Q E +V FR+ K+I DKH+D M+K GAILA GILDAGG NVTI L Sbjct: 491 QDVYDLLKTNLYQDDAVTGEAAGLALGLVMLGSKNAQAIEDMVGYAQETQHEKILRGLAVGIALVMYGRMEEADALIESLCRDKDPILRRSGMYTVAMAYCGSGNNKAIRRLLHVAVSDVNDDVRRAAVESLGFILFRTPEQCPSVVSLLSESYNPHVRYGAAMALGICCAGTGNKEAINLLEPMTNDPVNYVRQGALIASALIMIQQTEITCPKVNQFRQLYSKVINDKHDDVMAKFGAILAQGILDAGGHNVTISL 748
BLAST of CX671495 vs. ExPASy Swiss-Prot
Match: PSMD1_RAT (26S proteasome non-ATPase regulatory subunit 1 OS=Rattus norvegicus GN=Psmd1 PE=2 SV=1) HSP 1 Score: 329.717 bits (844), Expect = 1.191e-89 Identity = 165/258 (63.95%), Postives = 207/258 (80.23%), Query Frame = 1 Query: 46 EDIYDDIKNVLYTDSAVAGEAAGISMGLLMVGTASEKAGE-MLTYAHETQHEKIIRGLALGIALTVYGREEEADTLIEQMTRDQDPILRYGGMYALALAYSGTANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLSEAISLLEPLTSDVVDFVRQGALIAMAMVMVQINEANDSRVGTFRRQLEKIILDKHEDTMSKMGAILASGILDAGGRNVTIRL 816 +D+YD +K LY D AV GEAAG+++GL+M+G+ + +A E M+ YA ETQHEKI+RGLA+GIAL +YGR EEAD LIE + RD+DPILR GMY +A+AY G+ NNKAIR+LLH AVSDV+DDVRR AV +LGF+L+ PEQ P +VSLLSESYNPHVRYGAA+A+G+ CAGTG EAI+LLEP+T+D V++VRQGALIA A++M+Q E +V FR+ K+I DKH+D M+K GAILA GILDAGG NVTI L Sbjct: 491 QDVYDLLKTNLYQDDAVTGEAAGLALGLVMLGSKNTQAIEDMVGYAQETQHEKILRGLAVGIALVMYGRMEEADALIESLCRDKDPILRRSGMYTVAMAYCGSGNNKAIRRLLHVAVSDVNDDVRRAAVESLGFILFRTPEQCPSVVSLLSESYNPHVRYGAAMALGVCCAGTGNKEAINLLEPMTNDPVNYVRQGALIASALIMIQQTEITCPKVNQFRQLYSKVINDKHDDVMAKFGAILAQGILDAGGHNVTISL 748
BLAST of CX671495 vs. ExPASy Swiss-Prot
Match: PSMD1_CHICK (26S proteasome non-ATPase regulatory subunit 1 OS=Gallus gallus GN=PSMD1 PE=2 SV=1) HSP 1 Score: 327.791 bits (839), Expect = 4.527e-89 Identity = 165/258 (63.95%), Postives = 206/258 (79.84%), Query Frame = 1 Query: 46 EDIYDDIKNVLYTDSAVAGEAAGISMGLLMVGTASEKAGE-MLTYAHETQHEKIIRGLALGIALTVYGREEEADTLIEQMTRDQDPILRYGGMYALALAYSGTANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLSEAISLLEPLTSDVVDFVRQGALIAMAMVMVQINEANDSRVGTFRRQLEKIILDKHEDTMSKMGAILASGILDAGGRNVTIRL 816 +D+YD +K LY D AV GEAAG+++GL+M+G+ + +A E M+ YA ETQHEKI+RGLA+GIAL +YGR EEAD LIE + RD+DPILR GMY +A+AY G+ NNKAIR+LLH AVSDV+DDVRR AV +LGF+L+ PEQ P +VSLLSESYNPHVRYGAA+A+GI CAGTG EAI+LLEP+T+D V++VRQGALIA A++M+Q E +V FR+ K+I DKH+D M+K GAILA GILDAGG NV I L Sbjct: 491 QDVYDLLKTNLYQDDAVTGEAAGLALGLVMLGSKNAQAIEDMVGYAQETQHEKILRGLAVGIALVMYGRMEEADALIESLCRDKDPILRRSGMYTVAMAYCGSGNNKAIRRLLHVAVSDVNDDVRRAAVESLGFILFRTPEQCPSVVSLLSESYNPHVRYGAAMALGICCAGTGNKEAINLLEPMTNDPVNYVRQGALIASALIMIQQTEITCPKVSQFRQLYSKVINDKHDDVMAKFGAILAQGILDAGGHNVIISL 748
BLAST of CX671495 vs. ExPASy Swiss-Prot
Match: RPN2_SCHPO (26S proteasome regulatory subunit rpn2 OS=Schizosaccharomyces pombe GN=rpn2 PE=1 SV=1) HSP 1 Score: 313.153 bits (801), Expect = 1.154e-84 Identity = 152/259 (58.69%), Postives = 199/259 (76.83%), Query Frame = 1 Query: 43 DEDIYDDIKNVLYTDSAVAGEAAGISMGLLMVGTASEKA-GEMLTYAHETQHEKIIRGLALGIALTVYGREEEADTLIEQMTRDQDPILRYGGMYALALAYSGTANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLSEAISLLEPLTSDVVDFVRQGALIAMAMVMVQINEANDSRVGTFRRQLEKIILDKHEDTMSKMGAILASGILDAGGRNVTIRL 816 DE +Y+ +K +L+ D+AVAG AAGISMGL+M+GTAS A EML YAHETQHEKIIRGL +GIAL VYGR++EAD +I+++ D DP LRY GM+A ALAY GT+N+K +R +LH +VSDV+DDVRR AV ALGF+ + +P V LL +SYNPHVRYG+A+A+GI+CA +G + A+ LL L D DFVRQGA+IA AM++ Q N+ +S+V R+ E++I +KHED ++K+GA LA GI+DAGGRNVTI L Sbjct: 473 DETLYESVKTILFNDNAVAGSAAGISMGLIMLGTASSAAIDEMLQYAHETQHEKIIRGLGIGIALIVYGRQQEADGIIKELNNDLDPTLRYAGMFATALAYCGTSNSKIVRDVLHISVSDVNDDVRRAAVCALGFICFKDPNALISTVELLVDSYNPHVRYGSAIALGIACANSGSNAALDLLSRLVEDATDFVRQGAMIAQAMILTQHNDQLNSKVSGIRKHFEQVINEKHEDALAKLGATLAQGIIDAGGRNVTIAL 731
BLAST of CX671495 vs. ExPASy Swiss-Prot
Match: PSMD1_DROME (26S proteasome non-ATPase regulatory subunit 1 OS=Drosophila melanogaster GN=Rpn2 PE=1 SV=1) HSP 1 Score: 312.768 bits (800), Expect = 1.507e-84 Identity = 155/259 (59.85%), Postives = 208/259 (80.31%), Query Frame = 1 Query: 46 EDIYDDIKNVLYTDSAVAGEAAGISMGLLMVGTASEKAGE-MLTYAHETQHEKIIRGLALGIALTVYGREEEADTLIEQMTRDQDPILRYGGMYALALAYSGTANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLSEAISLLEPLTS-DVVDFVRQGALIAMAMVMVQINEANDSRVGTFRRQLEKIILDKHEDTMSKMGAILASGILDAGGRNVTIRL 816 +D+Y+ +K LY D AV GEAAGI+MG++M+G+ + +A E M++YA ETQHEKI+RGLA+GI+LT++ R EEAD L+ ++ D+DP+LR GMY +A+AY+GT +NKAIR+LLH AVSDV+DDVRR AV A+GF+L+ PEQ P +VSLL+ESYNPHVRYGAA+A+GI+CAGTGL EAI+LLEP+ D V+FVRQGALIA AM+++Q + + + FR+ ++I +KHED M+K GAILA GI+DAGGRN T+ L Sbjct: 506 QDLYEQLKFNLYQDDAVTGEAAGIAMGMVMLGSKNAQAIEDMVSYAQETQHEKILRGLAVGISLTMFSRLEEADPLVTSLSSDKDPVLRRSGMYTIAMAYNGTGSNKAIRKLLHVAVSDVNDDVRRAAVTAIGFILFRSPEQCPSVVSLLAESYNPHVRYGAAMALGIACAGTGLREAIALLEPMVKFDPVNFVRQGALIASAMILIQHTDQSCPKSTFFRQLYAEVISNKHEDVMAKYGAILAQGIIDAGGRNATLSL 764
BLAST of CX671495 vs. ExPASy Swiss-Prot
Match: PSMD1_DICDI (26S proteasome non-ATPase regulatory subunit 1 OS=Dictyostelium discoideum GN=psmD1 PE=1 SV=1) HSP 1 Score: 309.301 bits (791), Expect = 1.666e-83 Identity = 150/258 (58.14%), Postives = 203/258 (78.68%), Query Frame = 1 Query: 46 EDIYDDIKNVLYTDSAVAGEAAGISMGLLMVGTASEKA-GEMLTYAHETQHEKIIRGLALGIALTVYGREEEADTLIEQMTRDQDPILRYGGMYALALAYSGTANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLSEAISLLEPLTSDVVDFVRQGALIAMAMVMVQINEANDSRVGTFRRQLEKIILDKHEDTMSKMGAILASGILDAGGRNVTIRL 816 +D+Y+D+K+VLY D AV+GEAAG++MGL+M+G+ ++KA EML YAHETQHEK IR L++G+A +YG+EE ADTLIEQM D+DP++RYGGMYA+A AY GT +N A+R+LLH AVSD +D VRR AV +GFVL +PE+ P+ ++LL+ESYNPHVRYGAA A+GI+CAGTG +A+ +L+ LT+D V +V+Q A I+MAMV++Q ++ T R+ I DK ED+MSK GA+LA G++DAGGRN TI+L Sbjct: 480 DDLYEDLKSVLYNDDAVSGEAAGLAMGLVMLGSGAKKAIEEMLAYAHETQHEKTIRSLSMGLAFLMYGKEESADTLIEQMIGDKDPLIRYGGMYAIAFAYCGTGHNDALRKLLHVAVSDGTDSVRRAAVTCIGFVLSRQPEKCPKAIALLAESYNPHVRYGAAFALGIACAGTGQRDALEILKSLTTDSVGYVKQAAWISMAMVLIQTSKELVPEAETARKLFATCISDKREDSMSKFGAVLAFGVIDAGGRNSTIQL 737
BLAST of CX671495 vs. ExPASy Swiss-Prot
Match: RPN2_YEAST (26S proteasome regulatory subunit RPN2 OS=Saccharomyces cerevisiae GN=RPN2 PE=1 SV=4) HSP 1 Score: 275.789 bits (704), Expect = 2.042e-73 Identity = 137/257 (53.31%), Postives = 187/257 (72.76%), Query Frame = 1 Query: 49 DIYDDIKNVLYTDSAVAGEAAGISMGLLMVGTASEKA-GEMLTYAHETQHEKIIRGLALGIALTVYGREEEADTLIEQMTRDQDPILRYGGMYALALAYSGTANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLSEAISLLEPLTSDVVDFVRQGALIAMAMVMVQINEANDSRVGTFRRQLEKIILDKHEDTMSKMGAILASGILDAGGRNVTIRL 816 ++Y+ +K VLY DSA +GEAA + MGL M+GT +A +M TY+ ETQH I RGLA+G+AL YGR+E AD LI +M + +LRYGG + +ALAY+GT NN A+++LLH AVSD +DDVRR AV+ALGFVL + PRIV LLS+S+N HVR G A A+GI+CAG GL AI +L+PLT D VDFVRQ A+IA++M+++Q E + +V + +I +KH++ ++K GA +A GI++AGGRNVTI+L Sbjct: 461 EVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKFGACVAQGIMNAGGRNVTIQL 717
BLAST of CX671495 vs. ExPASy Swiss-Prot
Match: RPN2_ASHGO (26S proteasome regulatory subunit RPN2 OS=Ashbya gossypii GN=RPN2 PE=3 SV=1) HSP 1 Score: 269.24 bits (687), Expect = 1.911e-71 Identity = 134/257 (52.14%), Postives = 188/257 (73.15%), Query Frame = 1 Query: 49 DIYDDIKNVLYTDSAVAGEAAGISMGLLMVGTASEKAGEML-TYAHETQHEKIIRGLALGIALTVYGREEEADTLIEQMTRDQDPILRYGGMYALALAYSGTANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLSEAISLLEPLTSDVVDFVRQGALIAMAMVMVQINEANDSRVGTFRRQLEKIILDKHEDTMSKMGAILASGILDAGGRNVTIRL 816 +I++ +K VLY DSA +G AA + +GL M+G+ E E L TYA ET H +I +GLA+ +AL YGREE AD I++M ++ +RYG +Y +ALAY+GT++N+A+++LLH AVSD +DDVRR +V ALGFVL + PRIV LLSES+NPHVR G A A+G++CAG GL AI +LEPLT+D VDFVRQ A+IA++M+++Q E + +V QL +I +KH++ ++K GA +A GI++AGGRNVTI+L Sbjct: 453 EIFEALKEVLYADSANSGAAAALGIGLTMLGSGDETVAENLYTYAQETSHGEITKGLAIALALLNYGREELADETIKKMLEHENDSMRYGAVYTIALAYAGTSSNEAVKKLLHVAVSDSNDDVRRASVTALGFVLIRDYTTVPRIVELLSESHNPHVRCGTAFALGVACAGRGLQAAIDVLEPLTNDPVDFVRQAAMIALSMILIQQTEKTNVKVRDVNEQLRNVIANKHQEGLAKFGACVAQGIINAGGRNVTIQL 709 The following BLAST results are available for this feature:
BLAST of CX671495 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 13
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Sequences
The
following sequences are available for this feature:
EST sequence >CX671495 ID=CX671495; Name=CX671495; organism=Citrus sinensis; type=EST; length=820bpback to top |