CX671494

Overview
NameCX671494
Unique NameCX671494
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length897
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12448 contig Csv1_Contig12448:2447..3343. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX671494 vs. ExPASy Swiss-Prot
Match: PSMD1_DICDI (26S proteasome non-ATPase regulatory subunit 1 OS=Dictyostelium discoideum GN=psmD1 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.739e-11
Identity = 45/126 (35.71%), Postives = 61/126 (48.41%), Query Frame = -1 
Query:  553 EKDGDSMQVDTPPEKKA----EPEPSFEILINPARVVPAQEKFIKFLEDSRYVPVKSSPS-GFVLLRDLRPNEPEVLSLTDXXXXXXXXXXXXXXXXXXXXXXAMAVD------EEPQPPAPFEYT 897
            EK+    +     EK+A    E EP FE   NPAR+VP Q ++++F +D+RY P+K SP+ G V+LRDL PNEPE L + +                        A         EP  P PFE+T
Sbjct:  850 EKEAKEKEAKEKEEKEAAKAEEKEPLFERKSNPARIVPRQLQYVQF-DDARYQPIKKSPAIGIVMLRDLTPNEPEQLVVKEKPETKQETVGNQSGTATATASLPNATTTTSPTLPEPSTPEPFEFT 974
The following BLAST results are available for this feature:
BLAST of CX671494 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PSMD1_DICDI9.739e-1135.7126S proteasome non-ATPase regulatory subunit 1 OS=... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS10_11D09_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-11D09-H17-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671494 ID=CX671494; Name=CX671494; organism=Citrus sinensis; type=EST; length=897bp
TTTTTTTTTGATTGAAATTGCAGCCTTCTATTATGTCATGCTCACTGAGA
GTAATACGCAAATTACACAAAAAACCAAATATGATGCTTAAACAAGATAC
TGTTAACTAATTGCAAACTCATGAACCCTGGGGAGGCTTGGGCGAGGTTC
CCCTTTCCAGTCTTCCGAATTAAACGTAACTACAAAAGAAACACAACAAA
TTCATCTAGAAAGACATCTTTTGCTCTGTTCAGTGTCTAGATTTTTTTTC
GGTGAAAACAATGTCTTAAATTACAGGGAAGATGATTAAGAACTTTCCTA
GATCCAGTGTAGTTGCAGGTTCCATCTTTCCCTGTTCATCTTTAAAAATA
AACATACAAATTAAACTAAAACAGTTTACAGTTTCACGATATCAGAGAAC
CTGCAAAGTGCCTGCTAATTCAACCTTTGTTGCTCATCTCACCAAGCAGG
ATTGTAGCAGCGGTTAATCAGACCAATTTGTTTGTTTCTTCCGCTCGTAG
CACCTCTACTCCCAAAAAAGAGGATGAAAATCACACACTAGCTGAATCAT
GAGGTGTACTCGAAAGGAGCTGGTGGCTGAGGTTCTTCATCAACAGCCAT
GGCCGAAGCAGAACCCTGCTGTCCCGTTGTTGACCCACCACCAGCAGGTG
ACTGTGTAGACGATGGAGCATCTGTGAGGGATAGTACCTCTGGTTCATTG
GGACGCAAGTCCCTCAGGAGAACAAACCCTGATGGTGATGACTTCACAGG
CACATATCTGCTGTCCTCAAGAAATTTAATGAACTTCTCCTGTGCTGGAA
CCACCCTGGCAGGGTTAATCAAAATTTCGAAAGAAGGCTCAGGCTCTGCT
TTCTTCTCTGGAGGTGTATCAACCTGCATAGAGTCTCCATCTTTCTC
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