EY660554
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY660554 vs. ExPASy Swiss-Prot
Match: CB4A_ARATH (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.1 PE=1 SV=1) HSP 1 Score: 308.916 bits (790), Expect = 1.381e-83 Identity = 148/162 (91.36%), Postives = 156/162 (96.30%), Query Frame = 2 Query: 11 AEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLHTTILDTFIS 496 +EVFG+QRFRECELIHGRWAMLATLGAL+VEWLTG+TWQDAGKVELV+GSSYLGQPLPFSI+TLIWIEVLVIGYIEFQRN+ELD EKRLYPGGKFFDPLGLAADPEK A LQLAEIKHARLAMVAFLGFAVQA TGKGPLNNWATHLSDPLHTTI+DTF S Sbjct: 128 SEVFGIQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLAADPEKTAQLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFSS 289
BLAST of EY660554 vs. ExPASy Swiss-Prot
Match: CB4B_ARATH (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.2 PE=1 SV=1) HSP 1 Score: 307.375 bits (786), Expect = 4.018e-83 Identity = 147/162 (90.74%), Postives = 155/162 (95.68%), Query Frame = 2 Query: 11 AEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLHTTILDTFIS 496 +EVFGLQRFRECELIHGRWAMLATLGA+TVEWLTG+TWQDAGKVELV+GSSYLGQPLPFSI+TLIWIEVLVIGYIEFQRN+ELD EKRLYPGGKFFDPLGLA+DP KKA LQLAEIKHARLAMV FLGFAVQA TGKGPLNNWATHLSDPLHTTI+DTF S Sbjct: 125 SEVFGLQRFRECELIHGRWAMLATLGAITVEWLTGVTWQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLASDPVKKAQLQLAEIKHARLAMVGFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFSS 286
BLAST of EY660554 vs. ExPASy Swiss-Prot
Match: CB4C_ARATH (Chlorophyll a-b binding protein CP29.3, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.3 PE=1 SV=1) HSP 1 Score: 246.899 bits (629), Expect = 6.444e-65 Identity = 122/145 (84.14%), Postives = 133/145 (91.72%), Query Frame = 2 Query: 14 EVFGLQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWAT 448 EVFG+QRFRECELIHGRWAML TLGA+ VE LTGI WQDAGKVELVEGSSYLGQPLPFS+TTLIWIEVLV+GYIEFQRNSELDPEKR+YPGG +FDPLGLAADPEK TL+LAEIKH+RLAMVAFL FA+QA TGKGP++ AT Sbjct: 130 EVFGIQRFRECELIHGRWAMLGTLGAIAVEALTGIAWQDAGKVELVEGSSYLGQPLPFSLTTLIWIEVLVVGYIEFQRNSELDPEKRIYPGG-YFDPLGLAADPEKLDTLKLAEIKHSRLAMVAFLIFALQAAFTGKGPVSFLAT 273
BLAST of EY660554 vs. ExPASy Swiss-Prot
Match: CB29_CHLRE (Chlorophyll a-b binding protein CP29 OS=Chlamydomonas reinhardtii GN=Lhcb4 PE=1 SV=3) HSP 1 Score: 184.882 bits (468), Expect = 3.007e-46 Identity = 96/146 (65.75%), Postives = 116/146 (79.45%), Query Frame = 2 Query: 11 AEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNSELDPEKRLYPGGKFFDPLGLAADPEKKA-TLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWA 445 +EVFGL RFRECELIHGRWAMLA LGAL E TG++W +AGKVEL +G+SY G LPFSIT LIWIEV+++G EF RNSE +PEKR YPGG FDPL LA++ E++A L+ AEIKHARLAMV+F G+ VQA+ TG+G L + A Sbjct: 125 SEVFGLARFRECELIHGRWAMLACLGALVAEATTGVSWVEAGKVEL-DGASYAGLSLPFSITQLIWIEVILVGGAEFYRNSETNPEKRCYPGG-VFDPLKLASEDEERAFRLKTAEIKHARLAMVSFFGYGVQALSTGEGALGSLA 268
BLAST of EY660554 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1) HSP 1 Score: 135.191 bits (339), Expect = 2.733e-31 Identity = 76/160 (47.50%), Postives = 103/160 (64.38%), Query Frame = 2 Query: 26 LQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVELVEG--SSYLGQPLPF-SITTLIWIEVLVIGYIEFQRNSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAV-QAVVTGKGPLNNWATHLSDPLHTTILDTFI 493 L+R++E ELIH RWAMLA G + E L W A + + G ++YLGQP+P+ ++ T++ IE L I ++E QR+ E D EK+ YPGG F DPLG + DP K L++ EIK+ RLA++A +GF V Q+ G GPL N ATHL+DP H I D I Sbjct: 81 LERYKESELIHCRWAMLAVPGIIVPEALGLGNWVKAQEWAAIPGGQATYLGQPVPWGTLPTILAIEFLAIAFVEHQRSMEKDSEKKKYPGGAF-DPLGYSKDPAKFEELKVKEIKNGRLALLAIVGFCVQQSAYLGTGPLENLATHLADPWHNNIGDVII 239
BLAST of EY660554 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1) HSP 1 Score: 132.494 bits (332), Expect = 1.771e-30 Identity = 78/159 (49.06%), Postives = 100/159 (62.89%), Query Frame = 2 Query: 29 QRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGK-VELVEG-SSYLGQPLPF-SITTLIWIEVLVIGYIEFQRNSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAV-QAVVTGKGPLNNWATHLSDPLHTTILDTFI 493 +RF+E E+ H RWAML G L E L W A + L +G ++YLG P+P+ ++ T++ IE L I + E QR E DPEK+ YPGG F DPLG + DP K L+L EIK+ RLAM+AF+GF V Q+ G GPL N ATHL+DP H I D I Sbjct: 81 ERFKESEIYHCRWAMLCVPGVLVPEALGLGNWVKAQEWAALPDGQATYLGNPVPWGNLPTILAIEFLAIAFAEQQRTMEKDPEKKKYPGGAF-DPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIVI 238
BLAST of EY660554 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1) HSP 1 Score: 117.472 bits (293), Expect = 5.896e-26 Identity = 69/161 (42.86%), Postives = 98/161 (60.87%), Query Frame = 2 Query: 32 RFRECELIHGRWAMLATLGALTVEWLTGI--------TWQDAGKVELVEGSS--YLGQPLPFSITTLIWIEVLVIGYIEFQR-NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLHTTIL 481 +++ ELIH RWAML G + E L W G + L++G++ Y G+ +P ++ + EV+++G E+ R + LD E +L+PGG F DPLGLA DPE+ A L++ EIK+ RLAM A LGF +QA VTG+GP+ N A HLSDP +L Sbjct: 109 KYQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVLAVVAEVVLLGGAEYYRITNGLDFEDKLHPGGPF-DPLGLAKDPEQGALLKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENLAKHLSDPFGNNLL 267
BLAST of EY660554 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1) HSP 1 Score: 117.087 bits (292), Expect = 7.701e-26 Identity = 76/168 (45.24%), Postives = 95/168 (56.55%), Query Frame = 2 Query: 8 SAEVFGLQRFRECELIHGRWAMLATLGALTVEWL---TGI-----TWQDAGKVELVEGS-SYLGQPLPF---SITTLIWIEVLVIGYIEFQRNSELD---PEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPL 466 SA+ R R E+IHGRWAML LG + E L G+ W AG EG YLG P SI ++ +VL++G +E R + LD LYPGG++FDPLGLA DP A L++ EIK+ RLAM + GF VQA+VTGKGPL N HL DP+ Sbjct: 86 SADPEAFARNRALEVIHGRWAMLGALGCVFPEVLQKWVGVEFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRINGLDGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLFDHLDDPV 253
BLAST of EY660554 vs. ExPASy Swiss-Prot
Match: CB21_SINAL (Chlorophyll a-b binding protein 1, chloroplastic OS=Sinapis alba GN=CAB1 PE=3 SV=1) HSP 1 Score: 114.005 bits (284), Expect = 6.519e-25 Identity = 76/169 (44.97%), Postives = 97/169 (57.40%), Query Frame = 2 Query: 8 SAEVFGLQRFRECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQRNSELDP----EKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 469 SA+ R RE E+IH RWAML LG + E L G+ W AG EG YLG P +++ I +V+++G +E R + P E LYPGG F DPLGLA DPE A L++ EIK+ RLAM + GF VQA+VTGKGPL N A HL+DP++ Sbjct: 85 SADPETFARNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGEGPLGEAEDLLYPGGSF-DPLGLATDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 252
BLAST of EY660554 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1) HSP 1 Score: 113.62 bits (283), Expect = 8.514e-25 Identity = 77/169 (45.56%), Postives = 98/169 (57.99%), Query Frame = 2 Query: 8 SAEVFGLQRFRECELIHGRWAMLATLGALTVEWLT---GI-----TWQDAGKVELVEGS-SYLGQPLPF---SITTLIWIEVLVIGYIEFQR---NSE--LDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDP 463 SA+ R+RE ELIH RWA+L LG LT E L+ G+ W AG +G +YLG SI + ++V+++G E R SE LD LYPGG F DPLGLA DP+ A L++ EIK+ RLAM + LGF VQA+VTGKGP+ N HL+DP Sbjct: 70 SADPQTFARYREIELIHARWALLGALGILTPELLSQYAGVQFGEPVWFKAGAQIFADGGLNYLGNESLIHAQSIIATLAVQVVLMGLAEAYRANGGSEGFLDDLDTLYPGGPF-DPLGLADDPDTFAELKVKEIKNGRLAMFSCLGFFVQAIVTGKGPVQNLTDHLADP 237 The following BLAST results are available for this feature:
BLAST of EY660554 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 83
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Sequences
The
following sequences are available for this feature:
EST sequence >EY660554 ID=EY660554; Name=EY660554; organism=Citrus sinensis; type=EST; length=635bpback to top |