CX043585

Overview
NameCX043585
Unique NameCX043585
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length630
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX043585 vs. ExPASy Swiss-Prot
Match: SLU7_ORYSJ (Pre-mRNA-splicing factor SLU7 OS=Oryza sativa subsp. japonica GN=Os08g0127700 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.237e-19
Identity = 49/93 (52.69%), Postives = 54/93 (58.06%), Query Frame = -2 
Query:  351 ANIARKEASEETQTPVEGKRLATWGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKYNVKWNDEVTAEDMEAYRMKRVHHDDPMKDFLH 629
            AN+ARKEA+E+     E KRLATWGT                                 KYNVKWNDEVTAEDMEAYRMKR+HHDDPM+DFLH
Sbjct:  444 ANMARKEAAEDEPVRHEEKRLATWGTDVPNDIVLDKKLLDEALKKEGARRKEEMDERKRKYNVKWNDEVTAEDMEAYRMKRIHHDDPMRDFLH 536
[Close]
BLAST of CX043585 vs. ExPASy Swiss-Prot
Match: SLU7_ORYSI (Pre-mRNA-splicing factor SLU7 OS=Oryza sativa subsp. indica GN=OsI_27673 PE=3 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 5.237e-19
Identity = 49/93 (52.69%), Postives = 54/93 (58.06%), Query Frame = -2 
Query:  351 ANIARKEASEETQTPVEGKRLATWGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKYNVKWNDEVTAEDMEAYRMKRVHHDDPMKDFLH 629
            AN+ARKEA+E+     E KRLATWGT                                 KYNVKWNDEVTAEDMEAYRMKR+HHDDPM+DFLH
Sbjct:  444 ANMARKEAAEDEPVRHEEKRLATWGTDVPNDIVLDKKLLDEALKKEGARRKEEMDERKRKYNVKWNDEVTAEDMEAYRMKRIHHDDPMRDFLH 536
[Close]
BLAST of CX043585 vs. ExPASy Swiss-Prot
Match: SLU7A_ARATH (Pre-mRNA-splicing factor SLU7-A OS=Arabidopsis thaliana GN=At1g65660 PE=1 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 4.150e-16
Identity = 45/92 (48.91%), Postives = 54/92 (58.70%), Query Frame = -2 
Query:  354 ANIARKEASEETQTPVEGKRLATWGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKYNVKWNDEVTAEDMEAYRMKRVHHDDPMKDFL 629
            ANIARKEA+EE+   VE KR+A+WGT                                 KYNVK+N++VT E+MEAYRMKRVHH+DPMKDFL
Sbjct:  444 ANIARKEATEESPKKVEEKRMASWGTDIPEDLELNEEALANALKKEDLSRREEKDERKRKYNVKYNNDVTPEEMEAYRMKRVHHEDPMKDFL 535
[Close]
BLAST of CX043585 vs. ExPASy Swiss-Prot
Match: SLU7B_ARATH (Pre-mRNA-splicing factor SLU7-B OS=Arabidopsis thaliana GN=At4g37120 PE=2 SV=3)

HSP 1 Score: 76.6406 bits (187), Expect = 1.130e-13
Identity = 40/91 (43.96%), Postives = 52/91 (57.14%), Query Frame = -2 
Query:  357 ANIARKEASEETQTPVEGKRLATWGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKYNVKWNDEVTAEDMEAYRMKRVHHDDPMKDF 629
            ANIARKEAS+E+   VE K++ATWGT                                 KYNV + ++VT+E+MEAYRMKRVHH+DPM++F
Sbjct:  444 ANIARKEASKESPKKVEEKKMATWGTDIPEDLELNEEALANALKKEDLSRREEKDERKRKYNVNYTNDVTSEEMEAYRMKRVHHEDPMRNF 534
The following BLAST results are available for this feature:
BLAST of CX043585 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
SLU7_ORYSJ5.237e-1952.69Pre-mRNA-splicing factor SLU7 OS=Oryza sativa subs... [more]
SLU7_ORYSI5.237e-1952.69Pre-mRNA-splicing factor SLU7 OS=Oryza sativa subs... [more]
SLU7A_ARATH4.150e-1648.91Pre-mRNA-splicing factor SLU7-A OS=Arabidopsis tha... [more]
SLU7B_ARATH1.130e-1343.96Pre-mRNA-splicing factor SLU7-B OS=Arabidopsis tha... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS07_12B03_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-12B03-C6-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043585 ID=CX043585; Name=CX043585; organism=Citrus sinensis; type=EST; length=630bp
CCCCCCCTTTTTTCTACCACATGGTTAGGAATTATAATTGACTGAAATGT
GAATAATCAGACAAAGGCCAAAGCTAATAATAATGTATTAGGAAAGACGA
GAGAAAGGAACATCTACAACATATTTGATTTTTATTTTACAAGACCACTT
TATAAACTGAAAAAGATCATGAAAATAACAGAAGTATGCTTAAGGGCTGG
CTAAAATATAGGTTTGAAAAAAGAGCAAACAACTACATTTTCTTAAAAGG
ACAAGCGCCCCCGAAGCTTTACTATTCCAACTTCAAGCAAATGACAACCT
CGAATCCAAGCCAGAGCCTCTCTCTGTACATTATCACACATATGAACTTA
GTGCAGGAAATCCTTCATTGGATCATCATGATGTACTCTCTTCATCCTGT
ATGCCTCCATGTCCTCAGCCGTTACCTCATCATTCCATTTAACATTGTAT
TTACGCTTTCTTTCATCTTTCTCCTCTCGCTTCCTTTGATCCTCCTTCTT
GAGTGCCTCAGCAAGCAGGTCCTCATCCAAAACCAAGTCATCTGGAAGAT
CAGTTCCCCAAGTAGCAAGCCTTTTTCCCTCCACTGGTGTCTGCGTTTCT
TCAGATGCCTCTTTACGAGCAATATTGGCT
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