CX671443

Overview
NameCX671443
Unique NameCX671443
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length804
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10987 contig Csv1_Contig10987:396..1199. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX671443 vs. ExPASy Swiss-Prot
Match: RELA_MYXXA (GTP pyrophosphokinase OS=Myxococcus xanthus GN=relA PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.856e-48
Identity = 104/223 (46.64%), Postives = 155/223 (69.51%), Query Frame = -2
Query:    3 EDSPERLWEDLRPTISYLSPN-ELELVRRALMLAFEAHDGQKRRSGEPFIIHPVEVARILGELELDWESIAAGLLHDTVEDTNVVTFERIEEEFGATVRRIVEGETKVSKLGKLKCKNENHSVQDVKADDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPPHKQSSIATETLQVFAPLAKLLGMYQIKSELENLSFMYTNAEDYAKVKRRVADLYKKKKK 668
            +DSPER      PT+S   P+ +L+++++A + + + H GQ R+SGEP+++HP+EVA ILGEL+LD  SI  GLLHDT+EDT + T E + E FG+ V  +V+G TK+SK       + + S ++ +A++ R+M +AM +++RVI+VKLADR HNMRTL HM   KQ+ IA ETL ++APLA  LG+  IK+ELE+LSF Y   +++  ++   A L K+KK+
Sbjct:   19 DDSPERH----PPTVSQYHPDPDLDIIKKAYVYSAKVHQGQLRKSGEPYLVHPLEVAGILGELKLDEASIVTGLLHDTIEDT-LATEEELTELFGSEVAHLVDGVTKLSKFSA----SASLSQEEKQAENFRKMIIAMAQDIRVILVKLADRTHNMRTLDHMSEEKQARIAQETLDIYAPLANRLGISWIKTELEDLSFRYVKPQEFFALQ---AKLNKRKKE 229          
BLAST of CX671443 vs. ExPASy Swiss-Prot
Match: RELA_BACSU (GTP pyrophosphokinase OS=Bacillus subtilis GN=relA PE=3 SV=3)

HSP 1 Score: 184.882 bits (468), Expect = 4.559e-46
Identity = 99/206 (48.06%), Postives = 144/206 (69.90%), Query Frame = -2
Query:    6 SYLSPNELELVRRALMLAFEAHDGQKRRSGEPFIIHPVEVARILGELELDWESIAAGLLHDTVEDTNVVTFERIEEEFGATVRRIVEGETKVSKLGKLKCKNENHSVQDVKADDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPPHKQSSIATETLQVFAPLAKLLGMYQIKSELENLSFMYTNAEDYAKVKRRVADLYKKKK 623
            SYLS   +  V +A + A +AH  Q R+SGEP+IIHP++VA IL +LE+D  +IA G LHD VEDT+V T + ++E F   V  +V+G   V+KLGK+K K++    ++ +A++ R+MF+AM +++RVI++KLADRLHNMRTL H+P  KQ  I+ ETL++FAPLA  LG+ +IK ELE+ +  Y N + Y     R+ +L KKK+
Sbjct:   18 SYLSDEHIAFVEKAYLYAEDAHREQYRKSGEPYIIHPIQVAGILVDLEMDPSTIAGGFLHDVVEDTDV-TLDDLKEAFSEEVAMLVDG---VTKLGKIKYKSQ----EEQQAENHRKMFVAMAQDIRVILIKLADRLHNMRTLKHLPQEKQRRISNETLEIFAPLAHRLGISKIKWELEDTALRYLNPQQY----YRIVNLMKKKR 211          
BLAST of CX671443 vs. ExPASy Swiss-Prot
Match: RELA_STAES (GTP pyrophosphokinase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=relA PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 3.613e-43
Identity = 96/206 (46.60%), Postives = 141/206 (68.45%), Query Frame = -2
Query:    6 SYLSPNELELVRRALMLAFEAHDGQKRRSGEPFIIHPVEVARILGELELDWESIAAGLLHDTVEDTNVVTFERIEEEFGATVRRIVEGETKVSKLGKLKCKNENHSVQDVKADDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPPHKQSSIATETLQVFAPLAKLLGMYQIKSELENLSFMYTNAEDYAKVKRRVADLYKKKK 623
            SYLS +E E V ++  +A+EAH GQ R++G P+I+HP++VA IL E+ LD  +I AG LHD +EDT+  TFE +++ F   + RIV+G TK+ K+ K + K E       +A++ R++F+A+ ++VRVI+VKLADRLHNMRTL  MP  KQ  I+ ETL+++APLA  LG+  IK ELE+ +  Y ++  Y     R+ +L KKK+
Sbjct:   18 SYLSTSEYEYVLKSYHIAYEAHKGQFRKNGLPYIMHPIQVAGILTEMRLDGPTIVAGFLHDVIEDTSY-TFEDVKDMFNEEIARIVDGVTKLKKV-KYRSKEEQ------QAENHRKLFIAIAKDVRVILVKLADRLHNMRTLKAMPREKQVRISKETLEIYAPLAHRLGINTIKWELEDTALRYIDSVQYF----RIVNLMKKKR 211          
BLAST of CX671443 vs. ExPASy Swiss-Prot
Match: RELA_STAEQ (GTP pyrophosphokinase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=relA PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 3.613e-43
Identity = 96/206 (46.60%), Postives = 141/206 (68.45%), Query Frame = -2
Query:    6 SYLSPNELELVRRALMLAFEAHDGQKRRSGEPFIIHPVEVARILGELELDWESIAAGLLHDTVEDTNVVTFERIEEEFGATVRRIVEGETKVSKLGKLKCKNENHSVQDVKADDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPPHKQSSIATETLQVFAPLAKLLGMYQIKSELENLSFMYTNAEDYAKVKRRVADLYKKKK 623
            SYLS +E E V ++  +A+EAH GQ R++G P+I+HP++VA IL E+ LD  +I AG LHD +EDT+  TFE +++ F   + RIV+G TK+ K+ K + K E       +A++ R++F+A+ ++VRVI+VKLADRLHNMRTL  MP  KQ  I+ ETL+++APLA  LG+  IK ELE+ +  Y ++  Y     R+ +L KKK+
Sbjct:   18 SYLSTSEYEYVLKSYHIAYEAHKGQFRKNGLPYIMHPIQVAGILTEMRLDGPTIVAGFLHDVIEDTSY-TFEDVKDMFNEEIARIVDGVTKLKKV-KYRSKEEQ------QAENHRKLFIAIAKDVRVILVKLADRLHNMRTLKAMPREKQVRISKETLEIYAPLAHRLGINTIKWELEDTALRYIDSVQYF----RIVNLMKKKR 211          
BLAST of CX671443 vs. ExPASy Swiss-Prot
Match: RELA_STAAW (GTP pyrophosphokinase OS=Staphylococcus aureus (strain MW2) GN=relA PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 3.613e-43
Identity = 100/213 (46.95%), Postives = 141/213 (66.20%), Query Frame = -2
Query:    6 EDLRPTISYLSPNELELVRRALMLAFEAHDGQKRRSGEPFIIHPVEVARILGELELDWESIAAGLLHDTVEDTNVVTFERIEEEFGATVRRIVEGETKVSKLGKLKCKNENHSVQDVKADDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPPHKQSSIATETLQVFAPLAKLLGMYQIKSELENLSFMYTNAEDYAKVKRRVADLYKKKK 644
            E L    SYLS +E E V ++  +A+EAH GQ R++G P+I+HP++VA IL E+ LD  +I AG LHD +EDT   TFE ++E F   V RIV+G TK+ K+ K + K E       +A++ R++F+A+ ++VRVI+VKLADRLHNMRTL  MP  KQ  I+ ETL+++APLA  LG+  IK ELE+ +  Y +   Y     R+ +L KKK+
Sbjct:   18 EVLHKAKSYLSADEYEYVLKSYHIAYEAHKGQFRKNGLPYIMHPIQVAGILTEMRLDGPTIVAGFLHDVIEDTPY-TFEDVKEMFNEEVARIVDGVTKLKKV-KYRSKEEQ------QAENHRKLFIAIAKDVRVILVKLADRLHNMRTLKAMPREKQIRISRETLEIYAPLAHRLGINTIKWELEDTALRYIDNVQYF----RIVNLMKKKR 218          
BLAST of CX671443 vs. ExPASy Swiss-Prot
Match: RELA_STAAU (GTP pyrophosphokinase OS=Staphylococcus aureus GN=relA PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 3.613e-43
Identity = 100/213 (46.95%), Postives = 141/213 (66.20%), Query Frame = -2
Query:    6 EDLRPTISYLSPNELELVRRALMLAFEAHDGQKRRSGEPFIIHPVEVARILGELELDWESIAAGLLHDTVEDTNVVTFERIEEEFGATVRRIVEGETKVSKLGKLKCKNENHSVQDVKADDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPPHKQSSIATETLQVFAPLAKLLGMYQIKSELENLSFMYTNAEDYAKVKRRVADLYKKKK 644
            E L    SYLS +E E V ++  +A+EAH GQ R++G P+I+HP++VA IL E+ LD  +I AG LHD +EDT   TFE ++E F   V RIV+G TK+ K+ K + K E       +A++ R++F+A+ ++VRVI+VKLADRLHNMRTL  MP  KQ  I+ ETL+++APLA  LG+  IK ELE+ +  Y +   Y     R+ +L KKK+
Sbjct:   18 EVLHKAKSYLSADEYEYVLKSYHIAYEAHKGQFRKNGLPYIMHPIQVAGILTEMRLDGPTIVAGFLHDVIEDTPY-TFEDVKEMFNEEVARIVDGVTKLKKV-KYRSKEEQ------QAENHRKLFIAIAKDVRVILVKLADRLHNMRTLKAMPREKQIRISRETLEIYAPLAHRLGINTIKWELEDTALRYIDNVQYF----RIVNLMKKKR 218          
BLAST of CX671443 vs. ExPASy Swiss-Prot
Match: RELA_STAAS (GTP pyrophosphokinase OS=Staphylococcus aureus (strain MSSA476) GN=relA PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 3.613e-43
Identity = 100/213 (46.95%), Postives = 141/213 (66.20%), Query Frame = -2
Query:    6 EDLRPTISYLSPNELELVRRALMLAFEAHDGQKRRSGEPFIIHPVEVARILGELELDWESIAAGLLHDTVEDTNVVTFERIEEEFGATVRRIVEGETKVSKLGKLKCKNENHSVQDVKADDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPPHKQSSIATETLQVFAPLAKLLGMYQIKSELENLSFMYTNAEDYAKVKRRVADLYKKKK 644
            E L    SYLS +E E V ++  +A+EAH GQ R++G P+I+HP++VA IL E+ LD  +I AG LHD +EDT   TFE ++E F   V RIV+G TK+ K+ K + K E       +A++ R++F+A+ ++VRVI+VKLADRLHNMRTL  MP  KQ  I+ ETL+++APLA  LG+  IK ELE+ +  Y +   Y     R+ +L KKK+
Sbjct:   18 EVLHKAKSYLSADEYEYVLKSYHIAYEAHKGQFRKNGLPYIMHPIQVAGILTEMRLDGPTIVAGFLHDVIEDTPY-TFEDVKEMFNEEVARIVDGVTKLKKV-KYRSKEEQ------QAENHRKLFIAIAKDVRVILVKLADRLHNMRTLKAMPREKQIRISRETLEIYAPLAHRLGINTIKWELEDTALRYIDNVQYF----RIVNLMKKKR 218          
BLAST of CX671443 vs. ExPASy Swiss-Prot
Match: RELA_STAAR (GTP pyrophosphokinase OS=Staphylococcus aureus (strain MRSA252) GN=relA PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 3.613e-43
Identity = 100/213 (46.95%), Postives = 141/213 (66.20%), Query Frame = -2
Query:    6 EDLRPTISYLSPNELELVRRALMLAFEAHDGQKRRSGEPFIIHPVEVARILGELELDWESIAAGLLHDTVEDTNVVTFERIEEEFGATVRRIVEGETKVSKLGKLKCKNENHSVQDVKADDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPPHKQSSIATETLQVFAPLAKLLGMYQIKSELENLSFMYTNAEDYAKVKRRVADLYKKKK 644
            E L    SYLS +E E V ++  +A+EAH GQ R++G P+I+HP++VA IL E+ LD  +I AG LHD +EDT   TFE ++E F   V RIV+G TK+ K+ K + K E       +A++ R++F+A+ ++VRVI+VKLADRLHNMRTL  MP  KQ  I+ ETL+++APLA  LG+  IK ELE+ +  Y +   Y     R+ +L KKK+
Sbjct:   18 EVLHKAKSYLSADEYEYVLKSYHIAYEAHKGQFRKNGLPYIMHPIQVAGILTEMRLDGPTIVAGFLHDVIEDTPY-TFEDVKEMFNEEVARIVDGVTKLKKV-KYRSKEEQ------QAENHRKLFIAIAKDVRVILVKLADRLHNMRTLKAMPREKQIRISRETLEIYAPLAHRLGINTIKWELEDTALRYIDNVQYF----RIVNLMKKKR 218          
BLAST of CX671443 vs. ExPASy Swiss-Prot
Match: RELA_STAAN (GTP pyrophosphokinase OS=Staphylococcus aureus (strain N315) GN=relA PE=1 SV=2)

HSP 1 Score: 175.252 bits (443), Expect = 3.613e-43
Identity = 100/213 (46.95%), Postives = 141/213 (66.20%), Query Frame = -2
Query:    6 EDLRPTISYLSPNELELVRRALMLAFEAHDGQKRRSGEPFIIHPVEVARILGELELDWESIAAGLLHDTVEDTNVVTFERIEEEFGATVRRIVEGETKVSKLGKLKCKNENHSVQDVKADDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPPHKQSSIATETLQVFAPLAKLLGMYQIKSELENLSFMYTNAEDYAKVKRRVADLYKKKK 644
            E L    SYLS +E E V ++  +A+EAH GQ R++G P+I+HP++VA IL E+ LD  +I AG LHD +EDT   TFE ++E F   V RIV+G TK+ K+ K + K E       +A++ R++F+A+ ++VRVI+VKLADRLHNMRTL  MP  KQ  I+ ETL+++APLA  LG+  IK ELE+ +  Y +   Y     R+ +L KKK+
Sbjct:   18 EVLHKAKSYLSADEYEYVLKSYHIAYEAHKGQFRKNGLPYIMHPIQVAGILTEMRLDGPTIVAGFLHDVIEDTPY-TFEDVKEMFNEEVARIVDGVTKLKKV-KYRSKEEQ------QAENHRKLFIAIAKDVRVILVKLADRLHNMRTLKAMPREKQIRISRETLEIYAPLAHRLGINTIKWELEDTALRYIDNVQYF----RIVNLMKKKR 218          
BLAST of CX671443 vs. ExPASy Swiss-Prot
Match: SPOT_SHIFL (Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase OS=Shigella flexneri GN=spoT PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 4.718e-43
Identity = 94/208 (45.19%), Postives = 144/208 (69.23%), Query Frame = -2
Query:   30 LWEDLRPTI-SYLSPNELELVRRALMLAFEAHDGQKRRSGEPFIIHPVEVARILGELELDWESIAAGLLHDTVEDTNVVTFERIEEEFGATVRRIVEGETKVSKLGKLKCKNENHSVQDVKADDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPPHKQSSIATETLQVFAPLAKLLGMYQIKSELENLSFMYTNAEDYAKVKRRV 650
            L+E L   I +YL  ++++ +R+A ++A +AH+GQ R SGEP+I HPV VA IL E++LD+E++ A LLHD +EDT   T++ +E+ FG +V  +VEG   VSKL KLK +++    ++ +A++ R+M +AM +++RVI++KLADR HNMRTL  + P K+  IA ETL++++PLA  LG++ IK+ELE L F       Y  +K  V
Sbjct:    3 LFESLNQLIQTYLPEDQIKRLRQAYLVARDAHEGQTRSSGEPYITHPVAVACILAEMKLDYETLMAALLHDVIEDTPA-TYQDMEQLFGKSVAELVEG---VSKLDKLKFRDK----KEAQAENFRKMIMAMVQDIRVILIKLADRTHNMRTLGSLRPDKRRRIARETLEIYSPLAHRLGIHHIKTELEELGFEALYPNRYRVIKEVV 202          
The following BLAST results are available for this feature:
BLAST of CX671443 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
RELA_MYXXA2.856e-4846.64GTP pyrophosphokinase OS=Myxococcus xanthus GN=rel... [more]
RELA_BACSU4.559e-4648.06GTP pyrophosphokinase OS=Bacillus subtilis GN=relA... [more]
RELA_STAES3.613e-4346.60GTP pyrophosphokinase OS=Staphylococcus epidermidi... [more]
RELA_STAEQ3.613e-4346.60GTP pyrophosphokinase OS=Staphylococcus epidermidi... [more]
RELA_STAAW3.613e-4346.95GTP pyrophosphokinase OS=Staphylococcus aureus (st... [more]
RELA_STAAU3.613e-4346.95GTP pyrophosphokinase OS=Staphylococcus aureus GN=... [more]
RELA_STAAS3.613e-4346.95GTP pyrophosphokinase OS=Staphylococcus aureus (st... [more]
RELA_STAAR3.613e-4346.95GTP pyrophosphokinase OS=Staphylococcus aureus (st... [more]
RELA_STAAN3.613e-4346.95GTP pyrophosphokinase OS=Staphylococcus aureus (st... [more]
SPOT_SHIFL4.718e-4345.19Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohyd... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_11A12_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-11A12-B23-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671443 ID=CX671443; Name=CX671443; organism=Citrus sinensis; type=EST; length=804bp
TTTTTTTTTTTTTTTTTATAGAGGTCTGCAACTCTTCTTTTGACCTTGGC
ATAATCTTCAGCATTTGTGTACATAAAGGATAGATTTTCAAGTTCAGACT
TAATTTGGTACATCCCTAACAATTTTGCCAAGGGAGCAAAGACCTGCAAT
GTCTCCGTTGCAATGCTGGACTGCTTATGTGGAGGCATGTGTGAAAGAGT
GCGCATGTTATGCAATCTATCAGCCAATTTGACTATGATAACACGGACCT
CCTCAGTCATGGCTAGAAACATTTGCCGTAGGTCATCAGCTTTAACATCT
TGCACTGAATGGTTTTCATTCTTACACTTTAATTTTCCCAGCTTTGATAC
CTTAGTCTCTCCCTCTACAATGCGGCGTACAGTAGCTCCAAACTCCTCCT
CTATTCTTTCAAAAGTAACAACATTTGTATCTTCAACTGTGTCATGTAGT
AATCCCGCAGCAATAGATTCCCAATCCAGTTCAAGTTCACCCAGAATACG
AGCAACTTCAACTGGATGAATGATGAAAGGCTCTCCACTCCGTCTTTTCT
GACCATCATGCGCCTCAAAAGCCAACATCAGAGCTCTACGGACCAATTCC
AATTCATTAGGTGAAAGGTATGATATGGTGGGCCTAAGATCCTCCCACAA
CCTTTCAGGAGAATCCTCTTTGAAGGCATCCGAAGAGACAGATGGAGACA
AACACAGCCGCCATCTTTTACAGGCAACATGAAGTAAACTTGACCTAGGG
AGTTTGCCAAGAAGAACAAGGTCAGAACCTTCAGTGCACCAACTTCCCAC
ATCA
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