CX671442

Overview
NameCX671442
Unique NameCX671442
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length933
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671442 vs. ExPASy Swiss-Prot
Match: NC2B_ARATH (Protein Dr1 homolog OS=Arabidopsis thaliana GN=DR1 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 5.968e-27
Identity = 63/106 (59.43%), Postives = 73/106 (68.87%), Query Frame = -3
Query:  224 CFAEFINLVSSESNEVCSREDKRTIAPEHVLKALEVLGFGEYIEEVYAAYEQHKLETMQDSLKGGKWSNGXXXXXXXXXXXXXXXXXXXXXXMNGGAAGP-PKQPD 538
            C  EFINLVSSESN+VC++EDKRTIAPEHVLKAL+VLGFGEYIEEVYAAYEQHK ETMQD+ +  KW+ G                      MNGG + P P+ P+
Sbjct:   46 CCVEFINLVSSESNDVCNKEDKRTIAPEHVLKALQVLGFGEYIEEVYAAYEQHKYETMQDTQRSVKWNPGAQMTEEEAAAEQQRMFAEARARMNGGVSVPQPEHPE 151          
BLAST of CX671442 vs. ExPASy Swiss-Prot
Match: NC2B_DICDI (Protein Dr1 homolog OS=Dictyostelium discoideum GN=dr1 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.436e-14
Identity = 36/69 (52.17%), Postives = 48/69 (69.57%), Query Frame = -3
Query:  332 CFAEFINLVSSESNEVCSREDKRTIAPEHVLKALEVLGFGEYIEEVYAAYEQHKLETMQDSLKGGKWSN 538
            C  EFI+L+SSE+N++C RE KRTIA EHV+KAL  LGF +Y ++V   Y++HKLE    S    K+ N
Sbjct:   43 CCVEFIHLISSEANDICGREQKRTIAAEHVIKALTELGFSDYTQKVSDVYDKHKLEVSTKSKSSKKFEN 111          
BLAST of CX671442 vs. ExPASy Swiss-Prot
Match: NC2B_RAT (Protein Dr1 OS=Rattus norvegicus GN=Dr1 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.578e-11
Identity = 30/54 (55.56%), Postives = 43/54 (79.63%), Query Frame = -3
Query:  377 CFAEFINLVSSESNEVCSREDKRTIAPEHVLKALEVLGFGEYIEEVYAAYEQHK 538
            C  EFI+L+SSE+NE+C++ +K+TI+PEHV++ALE LGFG YI EV    ++ K
Sbjct:   42 CCTEFIHLISSEANEICNKSEKKTISPEHVIQALESLGFGSYISEVKEVLQECK 95          
BLAST of CX671442 vs. ExPASy Swiss-Prot
Match: NC2B_MOUSE (Protein Dr1 OS=Mus musculus GN=Dr1 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.578e-11
Identity = 30/54 (55.56%), Postives = 43/54 (79.63%), Query Frame = -3
Query:  377 CFAEFINLVSSESNEVCSREDKRTIAPEHVLKALEVLGFGEYIEEVYAAYEQHK 538
            C  EFI+L+SSE+NE+C++ +K+TI+PEHV++ALE LGFG YI EV    ++ K
Sbjct:   42 CCTEFIHLISSEANEICNKSEKKTISPEHVIQALESLGFGSYISEVKEVLQECK 95          
BLAST of CX671442 vs. ExPASy Swiss-Prot
Match: NC2B_HUMAN (Protein Dr1 OS=Homo sapiens GN=DR1 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.578e-11
Identity = 30/54 (55.56%), Postives = 43/54 (79.63%), Query Frame = -3
Query:  377 CFAEFINLVSSESNEVCSREDKRTIAPEHVLKALEVLGFGEYIEEVYAAYEQHK 538
            C  EFI+L+SSE+NE+C++ +K+TI+PEHV++ALE LGFG YI EV    ++ K
Sbjct:   42 CCTEFIHLISSEANEICNKSEKKTISPEHVIQALESLGFGSYISEVKEVLQECK 95          
BLAST of CX671442 vs. ExPASy Swiss-Prot
Match: NC2B_CHICK (Protein Dr1 OS=Gallus gallus GN=DR1 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.578e-11
Identity = 30/54 (55.56%), Postives = 43/54 (79.63%), Query Frame = -3
Query:  377 CFAEFINLVSSESNEVCSREDKRTIAPEHVLKALEVLGFGEYIEEVYAAYEQHK 538
            C  EFI+L+SSE+NE+C++ +K+TI+PEHV++ALE LGFG YI EV    ++ K
Sbjct:   42 CCTEFIHLISSEANEICNKSEKKTISPEHVIQALESLGFGSYISEVKEVLQECK 95          
BLAST of CX671442 vs. ExPASy Swiss-Prot
Match: NC2B_SCHPO (Negative cofactor 2 complex subunit beta OS=Schizosaccharomyces pombe GN=ncb2 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.831e-11
Identity = 33/67 (49.25%), Postives = 43/67 (64.18%), Query Frame = -3
Query:  338 CFAEFINLVSSESNEVCSREDKRTIAPEHVLKALEVLGFGEYIEEVYAAYEQHKLETMQDSLKGGKW 538
            C  EFI+LVSSE+NE+C +E K+TIA EH++KALE L F EYI E      +HK +      K  K+
Sbjct:   42 CCVEFIHLVSSEANEICEKEAKKTIAAEHIIKALENLEFKEYIAEALEVAAEHKEQQKNREKKSSKF 108          
The following BLAST results are available for this feature:
BLAST of CX671442 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
NC2B_ARATH5.968e-2759.43Protein Dr1 homolog OS=Arabidopsis thaliana GN=DR1... [more]
NC2B_DICDI4.436e-1452.17Protein Dr1 homolog OS=Dictyostelium discoideum GN... [more]
NC2B_RAT1.578e-1155.56Protein Dr1 OS=Rattus norvegicus GN=Dr1 PE=2 SV=1[more]
NC2B_MOUSE1.578e-1155.56Protein Dr1 OS=Mus musculus GN=Dr1 PE=2 SV=1[more]
NC2B_HUMAN1.578e-1155.56Protein Dr1 OS=Homo sapiens GN=DR1 PE=1 SV=1[more]
NC2B_CHICK1.578e-1155.56Protein Dr1 OS=Gallus gallus GN=DR1 PE=2 SV=1[more]
NC2B_SCHPO7.831e-1149.25Negative cofactor 2 complex subunit beta OS=Schizo... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS10_11A12_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-11A12-B23-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671442 ID=CX671442; Name=CX671442; organism=Citrus sinensis; type=EST; length=933bp
TTTTTTTGAACAAAGCTCACTAATTACATTAAGTTATAGACAATGATCCA
TAAGATAAAGTACAAATGGAAGTGCATATCCACATAGGCCACTGCACTCA
CAAAGGCTTTTTGTACATAATATAAGAGACTAAAGGCAGAACAGAAAGAG
TCAAGGATGCTTGCCTATGGTTGGAGAAAATTAAAAGTCCTATAGTTAGT
TAGCTCTCTAAACTTGGGTTAATGTCCGGTTGCTTGGGAGGGCCAGCGGC
TCCACCGTTCATTCGTGCACGTGCCTCAGCAAACATTCTCTGCTGCTCAG
CCGCTGCTTCTTCCTCCGTCATCTCGGCCCCATTGCTCCATTTGCCACCT
TTCAACGAGTCCTGCATAGTCTCAAGCTTGTGTTGCTCGTATGCAGCATA
GACCTCCTCGATGTACTCACCAAACCCAAGAACCTCCAAAGCCTTGAGTA
CATGCTCGGGAGCAATTGTTCTTTTATCCTCCCTGCTGCAAACTTCATTG
GACTCAGAGGAAACAAGATTTATAAACTCTGCAAAGCATTAAAACCAAAA
ATTTTAACCATTATGATAATATCCATTTGACAATTAAAGTGTAGAACAAT
TAGTAATAGAGAACTACTAATGGAATGCATTTTTTTCTCCTAAAAAAATC
ATGATATATGTATATAAAAGCATCCAAGAATATTTTCCACCTAATGCATT
TAAGGCACCCACAAGGACTGCCAGATTTGACTTGTTATATCTTTGAAGTT
GTGCGGTAAAAACTGTAGTCCATGACAATAATTGAAAAAAAAAGTAATAA
AAGAAACATAATCATCTAATAAATCAGTAGGACAATGATCATCATGTTCT
CTCAAATGGGTTAACATGCCTTTCGTAAACTTTCATGTTATCTCAAGAAA
TTTCGGATCAAGGGAAAAAAACATAATCATCTA
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