CX671430

Overview
NameCX671430
Unique NameCX671430
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length788
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX671430_ssr181 microsatellite CX671430_ssr181:181..192. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5460 contig Csv1_Contig5460:72..859. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX671430 vs. ExPASy Swiss-Prot
Match: STH_ARATH (Salt tolerance-like protein OS=Arabidopsis thaliana GN=STH PE=1 SV=2)

HSP 1 Score: 257.684 bits (657), Expect = 5.353e-68
Identity = 133/214 (62.15%), Postives = 158/214 (73.83%), Query Frame = -1
Query:  156 CDVEVHAANKLASKHQRLLLQCLSNKLPPCDICQEKAAFIFCVEDRALFCKDCDEPIHSPGSLFANHQRFLATGIRVALSS-SCSKDAERNIFEPPNQQASQTSVKMPTQQSSSISSPWAVDDFLQFSDFESSGK-KEQLEFGELEWIADMGIFNDQLPQEALAAAEVPQLPVSQPNNLISSYRPTKFNMPYKKPRIEIP-DDDDEHFTVPDLG 788
            CDVEVHAANKLASKHQRL L  LS K PPCDIC EKAAFIFCVEDRAL C+DCDE  H+P +  ANHQRFLATGIRVALSS SC+++ E+N F+P NQQ+     K PTQQ ++ S  WA D+F  +SD + S K KEQL+ GEL+W+A+MG+F DQ  QEAL  AEVP+L  S   +  S  RP K N+P KK R+E   DD++EHF VPDLG
Sbjct:   28 CDVEVHAANKLASKHQRLFLDSLSTKFPPCDICLEKAAFIFCVEDRALLCRDCDEATHAPNTRSANHQRFLATGIRVALSSTSCNQEVEKNHFDPSNQQSLS---KPPTQQPAAPSPLWATDEFFSYSDLDCSNKEKEQLDLGELDWLAEMGLFGDQPDQEALPVAEVPELSFSHLAHAHSYNRPMKSNVPNKKQRLEYRYDDEEEHFLVPDLG 238          
BLAST of CX671430 vs. ExPASy Swiss-Prot
Match: STO_ARATH (Salt tolerance protein OS=Arabidopsis thaliana GN=STO PE=1 SV=1)

HSP 1 Score: 254.603 bits (649), Expect = 4.531e-67
Identity = 136/222 (61.26%), Postives = 161/222 (72.52%), Query Frame = -1
Query:  156 CDVEVHAANKLASKHQRLLLQCLSNKLPPCDICQEKAAFIFCVEDRALFCKDCDEPIHSPGSLFANHQRFLATGIRVALSSS-CSKDAERNIFEPPN--QQASQTSVKMPTQQ----SSSISSPWAVDDFLQFSDFESSGKKEQLEF--GELEWIADMGIFNDQLPQEALAAAEVPQLPVSQPNNLISSYRPTKFNMPYKKPRIE--IPDDDDEHFTVPDLG 788
            CD+E+HAANKLASKHQRL L  LS K P CDICQEKAAFIFCVEDRAL C+DCDE IH   S  ANHQRFLATGI+VAL+S+ CSK+ E+N  EP N  Q+A+Q   K  +QQ    SS+   PWAVDDF  FSD ES+ KK QL+   GEL+W +DMG F DQ+  +AL AAEVP+L VS   + + SY+P K N+ +KKPR E    DDD+EHF VPDLG
Sbjct:   28 CDIEIHAANKLASKHQRLHLNSLSTKFPRCDICQEKAAFIFCVEDRALLCRDCDESIHVANSRSANHQRFLATGIKVALTSTICSKEIEKNQPEPSNNQQKANQIPAKSTSQQQQQPSSATPLPWAVDDFFHFSDIESTDKKGQLDLGAGELDWFSDMGFFGDQINDKALPAAEVPELSVSHLGH-VHSYKPMKSNVSHKKPRFETRYDDDDEEHFIVPDLG 248          
BLAST of CX671430 vs. ExPASy Swiss-Prot
Match: STHY_ARATH (Probable salt tolerance-like protein At1g78600 OS=Arabidopsis thaliana GN=At1g78600 PE=1 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 1.094e-20
Identity = 44/81 (54.32%), Postives = 57/81 (70.37%), Query Frame = -1
Query:  546 CDVEVHAANKLASKHQRLLLQCLSNKLPPCDICQEKAAFIFCVEDRALFCKDCDEPIHSPGSLFANHQRFLATGIRVALSS 788
            CD ++HAANKLA KHQR+ L   ++ +P CDICQE + F FC++DRAL C+ CD  IH+     + HQRFL TGI+V L S
Sbjct:   28 CDEKIHAANKLAGKHQRVPLSASASSIPKCDICQEASGFFFCLQDRALLCRKCDVAIHTVNPHVSAHQRFLLTGIKVGLES 108          
BLAST of CX671430 vs. ExPASy Swiss-Prot
Match: STHX_ARATH (Probable salt tolerance-like protein At1g75540 OS=Arabidopsis thaliana GN=At1g75540 PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.518e-19
Identity = 53/121 (43.80%), Postives = 73/121 (60.33%), Query Frame = -1
Query:  438 CDVEVHAANKLASKHQR--LLLQCLSNKLPP-CDICQEKAAFIFCVEDRALFCKDCDEPIHSPGSLFANHQRFLATGIRVALSSSCSKDAERNIFEPPNQQASQTSVKMP-TQQSSSISSP 788
            CD +VH ANKLASKH R  LL    SN   P CDICQ+K A +FC +DRA+ CKDCD  IH+       H RFL TG++++ +SS        +++P ++ +S +S     +   SSIS+P
Sbjct:   28 CDHQVHHANKLASKHLRFSLLYPSSSNTSSPLCDICQDKKALLFCQQDRAILCKDCDSSIHAANEHTKKHDRFLLTGVKLSATSS--------VYKPTSKSSSSSSSNQDFSVPGSSISNP 140          
The following BLAST results are available for this feature:
BLAST of CX671430 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
STH_ARATH5.353e-6862.15Salt tolerance-like protein OS=Arabidopsis thalian... [more]
STO_ARATH4.531e-6761.26Salt tolerance protein OS=Arabidopsis thaliana GN=... [more]
STHY_ARATH1.094e-2054.32Probable salt tolerance-like protein At1g78600 OS=... [more]
STHX_ARATH3.518e-1943.80Probable salt tolerance-like protein At1g75540 OS=... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS10_11A06_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-11A06-B11-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671430 ID=CX671430; Name=CX671430; organism=Citrus sinensis; type=EST; length=788bp
TTTTTTTTTTTTTTTTTGGGATTGATGATACTCCTAAAAATGTATTATAA
CACATAACATGTGTCTAAATACATATTTATATGTACGTGTACATAGGAAA
GTATGGGTAGTTCATCAACCTATGAATGACTGTAGATATTATTTCTTTAT
GTTTAACCAAGATCTGGGACAGTGAAATGCTCATCATCATCATCTGGGAT
CTCAATCCTTGGCTTCTTGTATGGCATATTGAATTTTGTGGGCCTGTATG
ATGATATTAAGTTGTTGGGCTGCGACACCGGGAGTTGAGGTACTTCAGCA
GCTGCTAGAGCCTCCTGAGGAAGTTGGTCGTTGAATATTCCCATGTCTGC
TATCCATTCAAGCTCTCCAAACTCGAGTTGCTCTTTCTTTCCAGAGGATT
CAAAATCTGAAAATTGTAAGAAGTCGTCCACGGCCCAAGGAGATGAGATG
CTCGAAGATTGCTGTGTAGGCATTTTTACTGAAGTTTGTGATGCTTGCTG
ATTTGGTGGCTCAAATATATTCCTTTCAGCATCTTTGGAACAACTAGAGC
TTAAGGCTACTCGGATTCCAGTGGCCAAAAACCTCTGATGGTTAGCAAAA
AGACTACCAGGTGAATGGATAGGTTCATCACAGTCCTTACAGAAGAGTGC
TCTGTCTTCAACACAGAAAATGAAAGCTGCCTTTTCTTGGCATATATCAC
ATGGAGGAAGCTTATTGGAAAGACACTGAAGAAGAAGCCTCTGGTGCTTG
CTAGCTAGCTTGTTTGCTGCGTGAACTTCAACATCACA
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