CX671406
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX671406 vs. ExPASy Swiss-Prot
Match: DCHS_SOLLC (Histidine decarboxylase OS=Solanum lycopersicum GN=HDC PE=2 SV=1) HSP 1 Score: 202.216 bits (513), Expect = 1.941e-51 Identity = 96/174 (55.17%), Postives = 125/174 (71.84%), Query Frame = -1 Query: 140 SGHKFVGCPMPCGVQITRMEHINVLSSNVEYRASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERPQDEEFVRRWQLACQGNIAHVVVMPNVTIDKLDDFLNELIDNRS-TWYEDGKRQPPCIAADIGSENCVCAAHK 658 SGHKF+GCPM CGVQITR +++ LS +EY S DATI GSRNG PIFLWY L++KG+ Q++ C+ NA YLKDRLL+AGIS MLN+ S TVVFERP D +F+RRW L C +AHVV+MP +T + +D F +L+ R+ WY+D K PPC+A D+ + NC+C+ K Sbjct: 239 SGHKFLGCPMSCGVQITRRSYVSTLSK-IEYINSADATISGSRNGFTPIFLWYCLSKKGHARLQQDSITCIENARYLKDRLLEAGISVMLNDFSITVVFERPCDHKFIRRWNLCCLRGMAHVVIMPGITRETIDSFFKDLMQERNYKWYQDVKALPPCLADDL-ALNCMCSNKK 410
BLAST of CX671406 vs. ExPASy Swiss-Prot
Match: DCHS_VIBAN (Histidine decarboxylase OS=Vibrio anguillarum GN=hdc PE=3 SV=1) HSP 1 Score: 114.775 bits (286), Expect = 4.075e-25 Identity = 56/142 (39.44%), Postives = 88/142 (61.97%), Query Frame = -1 Query: 236 SGHKFVGCPMPCGVQITRMEHINVLSSNVEYRASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERPQDEEFVRRWQLACQGNIAHVVVMPNVT-IDKLDDFLNELI 658 SGHK +G P+PCG+ + + ++ +S V+Y +SRD TI GSRNGH+ +F+W + + +Q +V +CL A Y R + GI+A N+ S+TVVF P E R+ LA G++AH++ MP++ DKLD + ++I Sbjct: 230 SGHKMIGSPIPCGIVLAKRHMVDQISVEVDYISSRDQTISGSRNGHSALFMWTAIKSHSFVDWQGKVNQCLNMAEYTVQRFQEVGINAWRNKNSNTVVFPCP-SEPVWRKHSLANSGSVAHIITMPHLDGPDKLDPLIEDVI 370
BLAST of CX671406 vs. ExPASy Swiss-Prot
Match: DCHS_VIBHB (Histidine decarboxylase OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=hdc PE=3 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 5.322e-25 Identity = 59/149 (39.60%), Postives = 91/149 (61.07%), Query Frame = -1 Query: 215 SGHKFVGCPMPCGVQITRMEHINVLSSNVEYRASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERPQDEEFVRRWQLACQGNIAHVVVMPNV-TIDKLDDFLNELIDNRSTWY 658 SGHK +G P+PCG+ + + ++ +S V+Y +SRD TI GSRNGH+ +F+W + +Q +V+ CL A Y RL AGI A N+ S+TVVF P E R+ LA G++AH+V MP++ + +LD ++++I + S Y Sbjct: 230 SGHKMIGSPIPCGIVLAKQHMVDQISVEVDYISSRDQTISGSRNGHSALFMWTAIKSHSLSDWQSKVKLCLDMADYTVQRLQKAGIEAWRNKNSNTVVFPCP-SEPIWRKHSLATSGDVAHIVTMPHLNSTAQLDALIDDVIFDLSPEY 377
BLAST of CX671406 vs. ExPASy Swiss-Prot
Match: DCHS_RHILO (Histidine decarboxylase OS=Rhizobium loti GN=hdc PE=3 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 4.505e-24 Identity = 58/145 (40.00%), Postives = 84/145 (57.93%), Query Frame = -1 Query: 224 SGHKFVGCPMPCGVQITRMEHINVLSSNVEYRASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERPQDEEFVRRWQLACQGNIAHVVVMPNVTIDKLDDFLNELIDNRS 658 SGHKF+G PMPCGV ++ H+ + N++Y S D T+ GSRN PI LWY + G +G ++ Q+C R A Y D L G+SA N + TVV P ++ +WQ+A Q +++H+VV P T + D + E I NR+ Sbjct: 227 SGHKFLGAPMPCGVVLSHKLHVQRVMRNIDYIGSSDTTLSGSRNAFTPIILWYAIRSLGIEGIKQTFQQCERLAAYTADELNVRGVSAWRNPNALTVVLP-PVEDSIKTKWQIATQ-DVSHLVVTPGTTKQQADALI-ETISNRN 368
BLAST of CX671406 vs. ExPASy Swiss-Prot
Match: DCHS_MORMO (Histidine decarboxylase OS=Morganella morganii GN=hdc PE=1 SV=2) HSP 1 Score: 103.605 bits (257), Expect = 9.394e-22 Identity = 53/139 (38.13%), Postives = 82/139 (58.99%), Query Frame = -1 Query: 254 SGHKFVGCPMPCGVQITRMEHINVLSSNVEYRASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERPQDEEFVRRWQLACQGNIAHVVV----MPNVTIDKLDD 658 SGHK +G P+PCG+ + + E+++ +S ++Y ++ D TI GSRNGH P+ LW + + +++ + + L A Y DR+ AGI+A N+ S TVVF P E R LA G++AH++ + V IDKL D Sbjct: 230 SGHKMIGSPIPCGIVVAKKENVDRISVEIDYISAHDKTITGSRNGHTPLMLWEAIRSHSTEEWKRRITRSLDMAQYAVDRMQKAGINAWRNKNSITVVFPCP-SERVWREHCLATSGDVAHLITTAHHLDTVQIDKLID 367
BLAST of CX671406 vs. ExPASy Swiss-Prot
Match: DCHS_KLEPL (Histidine decarboxylase OS=Klebsiella planticola GN=hdc PE=3 SV=4) HSP 1 Score: 101.679 bits (252), Expect = 3.570e-21 Identity = 48/142 (33.80%), Postives = 86/142 (60.56%), Query Frame = -1 Query: 236 SGHKFVGCPMPCGVQITRMEHINVLSSNVEYRASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERPQDEEFVRRWQLACQGNIAHVVVMP-NVTIDKLDDFLNELI 658 SGHK +G P+PCG+ + + ++++ +S ++Y ++ D TI GSRNGH P+ +W + ++ +++ +++ L A Y DR AGI A N+ S TVVF P E ++ LA G+IAH++ ++ K+D ++++I Sbjct: 230 SGHKMIGSPIPCGIVVAKKKNVDRISVEIDYISAHDKTISGSRNGHTPLMMWEAIRSHSWEEWRRRIERSLNMAQYAVDRFQSAGIDAWRNKNSITVVFPCP-SEAVWKKHCLATSGDIAHLIATAHHLDSSKIDALIDDVI 370
BLAST of CX671406 vs. ExPASy Swiss-Prot
Match: DCHS_PSEE4 (Histidine decarboxylase OS=Pseudomonas entomophila (strain L48) GN=hdc PE=3 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 4.662e-21 Identity = 54/143 (37.76%), Postives = 84/143 (58.74%), Query Frame = -1 Query: 236 SGHKFVGCPMPCGVQITRMEHINVLSSNVEYRASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERPQDEEFVRRWQLACQGNIAHVVVMPNVTIDK--LDDFLNELI 658 SGHK +G P+PCG+ + + E++ +S +V+Y + D TI GSRNGH P+ +W L +++ V+ L +A Y DRL AGI A ++ S TVVF P R++ LA G+ AH++ P+ DK +D ++E+I Sbjct: 230 SGHKMIGSPIPCGIVVAKRENVERISVDVDYIRANDKTISGSRNGHTPMMMWAALRSHSPAQWRRRVRHSLNSAQYAVDRLQAAGIDAWRHDNSITVVFPCP-SSRIARKYCLATSGDTAHLITTPHHQ-DKSMIDALIDEVI 370
BLAST of CX671406 vs. ExPASy Swiss-Prot
Match: DCHS_PSEFL (Histidine decarboxylase OS=Pseudomonas fluorescens GN=hdc PE=3 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 3.022e-20 Identity = 48/127 (37.80%), Postives = 71/127 (55.91%), Query Frame = -1 Query: 278 SGHKFVGCPMPCGVQITRMEHINVLSSNVEYRASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERPQDEEFVRRWQLACQGNIAHVVVMPN 658 SGHK +G P+PCG+ + + ++ +S V+Y + D TI GSRNGH P+ +W L + ++ ++ L A Y DR +GI A NE S TVVF P E ++ LA GN AH++ P+ Sbjct: 231 SGHKMIGSPIPCGIVVAKRNNVARISVEVDYIRAHDKTISGSRNGHTPLMMWAALRSYSWAEWRHRIKHSLDTAQYAVDRFQASGIDAWRNENSITVVFPCP-SERIATKYCLATSGNSAHLITTPH 356
BLAST of CX671406 vs. ExPASy Swiss-Prot
Match: DCHS_ACIBY (Histidine decarboxylase OS=Acinetobacter baumannii (strain AYE) GN=hdc PE=3 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 6.733e-20 Identity = 47/123 (38.21%), Postives = 73/123 (59.35%), Query Frame = -1 Query: 290 SGHKFVGCPMPCGVQITRMEHINVLSSNVEYRASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERPQDEEFVRRWQLACQGNIAHVV 658 SGHK +G P+PCG+ + + +++ +S +V+Y ++RD TI GSRNGH + +W + + ++ +Q CL+ A Y DR GI A N S TVVF P E ++ LA GN+AH++ Sbjct: 230 SGHKMIGSPIPCGIVVAKRQNVERISVDVDYISTRDQTISGSRNGHTVLLMWAAIRSQTNLQRRQRIQHCLKMAQYAVDRFQAVGIPAWRNPNSITVVFPCP-SEHIWKKHYLATSGNMAHLI 351
BLAST of CX671406 vs. ExPASy Swiss-Prot
Match: DCHS_ACIBC (Histidine decarboxylase OS=Acinetobacter baumannii (strain ACICU) GN=hdc PE=3 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 6.733e-20 Identity = 47/123 (38.21%), Postives = 73/123 (59.35%), Query Frame = -1 Query: 290 SGHKFVGCPMPCGVQITRMEHINVLSSNVEYRASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERPQDEEFVRRWQLACQGNIAHVV 658 SGHK +G P+PCG+ + + +++ +S +V+Y ++RD TI GSRNGH + +W + + ++ +Q CL+ A Y DR GI A N S TVVF P E ++ LA GN+AH++ Sbjct: 230 SGHKMIGSPIPCGIVVAKRQNVERISVDVDYISTRDQTISGSRNGHTVLLMWAAIRSQTNLQRRQRIQHCLKMAQYAVDRFQAVGIPAWRNPNSITVVFPCP-SEHIWKKHYLATSGNMAHLI 351 The following BLAST results are available for this feature:
BLAST of CX671406 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 15
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Sequences
The
following sequences are available for this feature:
EST sequence >CX671406 ID=CX671406; Name=CX671406; organism=Citrus sinensis; type=EST; length=658bpback to top |