CX671406

Overview
NameCX671406
Unique NameCX671406
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length658
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4898 contig Csv1_Contig4898:37..694. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX671406 vs. ExPASy Swiss-Prot
Match: DCHS_SOLLC (Histidine decarboxylase OS=Solanum lycopersicum GN=HDC PE=2 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 1.941e-51
Identity = 96/174 (55.17%), Postives = 125/174 (71.84%), Query Frame = -1
Query:  140 SGHKFVGCPMPCGVQITRMEHINVLSSNVEYRASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERPQDEEFVRRWQLACQGNIAHVVVMPNVTIDKLDDFLNELIDNRS-TWYEDGKRQPPCIAADIGSENCVCAAHK 658
            SGHKF+GCPM CGVQITR  +++ LS  +EY  S DATI GSRNG  PIFLWY L++KG+   Q++   C+ NA YLKDRLL+AGIS MLN+ S TVVFERP D +F+RRW L C   +AHVV+MP +T + +D F  +L+  R+  WY+D K  PPC+A D+ + NC+C+  K
Sbjct:  239 SGHKFLGCPMSCGVQITRRSYVSTLSK-IEYINSADATISGSRNGFTPIFLWYCLSKKGHARLQQDSITCIENARYLKDRLLEAGISVMLNDFSITVVFERPCDHKFIRRWNLCCLRGMAHVVIMPGITRETIDSFFKDLMQERNYKWYQDVKALPPCLADDL-ALNCMCSNKK 410          
BLAST of CX671406 vs. ExPASy Swiss-Prot
Match: DCHS_VIBAN (Histidine decarboxylase OS=Vibrio anguillarum GN=hdc PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.075e-25
Identity = 56/142 (39.44%), Postives = 88/142 (61.97%), Query Frame = -1
Query:  236 SGHKFVGCPMPCGVQITRMEHINVLSSNVEYRASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERPQDEEFVRRWQLACQGNIAHVVVMPNVT-IDKLDDFLNELI 658
            SGHK +G P+PCG+ + +   ++ +S  V+Y +SRD TI GSRNGH+ +F+W  +    +  +Q +V +CL  A Y   R  + GI+A  N+ S+TVVF  P  E   R+  LA  G++AH++ MP++   DKLD  + ++I
Sbjct:  230 SGHKMIGSPIPCGIVLAKRHMVDQISVEVDYISSRDQTISGSRNGHSALFMWTAIKSHSFVDWQGKVNQCLNMAEYTVQRFQEVGINAWRNKNSNTVVFPCP-SEPVWRKHSLANSGSVAHIITMPHLDGPDKLDPLIEDVI 370          
BLAST of CX671406 vs. ExPASy Swiss-Prot
Match: DCHS_VIBHB (Histidine decarboxylase OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=hdc PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.322e-25
Identity = 59/149 (39.60%), Postives = 91/149 (61.07%), Query Frame = -1
Query:  215 SGHKFVGCPMPCGVQITRMEHINVLSSNVEYRASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERPQDEEFVRRWQLACQGNIAHVVVMPNV-TIDKLDDFLNELIDNRSTWY 658
            SGHK +G P+PCG+ + +   ++ +S  V+Y +SRD TI GSRNGH+ +F+W  +       +Q +V+ CL  A Y   RL  AGI A  N+ S+TVVF  P  E   R+  LA  G++AH+V MP++ +  +LD  ++++I + S  Y
Sbjct:  230 SGHKMIGSPIPCGIVLAKQHMVDQISVEVDYISSRDQTISGSRNGHSALFMWTAIKSHSLSDWQSKVKLCLDMADYTVQRLQKAGIEAWRNKNSNTVVFPCP-SEPIWRKHSLATSGDVAHIVTMPHLNSTAQLDALIDDVIFDLSPEY 377          
BLAST of CX671406 vs. ExPASy Swiss-Prot
Match: DCHS_RHILO (Histidine decarboxylase OS=Rhizobium loti GN=hdc PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.505e-24
Identity = 58/145 (40.00%), Postives = 84/145 (57.93%), Query Frame = -1
Query:  224 SGHKFVGCPMPCGVQITRMEHINVLSSNVEYRASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERPQDEEFVRRWQLACQGNIAHVVVMPNVTIDKLDDFLNELIDNRS 658
            SGHKF+G PMPCGV ++   H+  +  N++Y  S D T+ GSRN   PI LWY +   G +G ++  Q+C R A Y  D L   G+SA  N  + TVV   P ++    +WQ+A Q +++H+VV P  T  + D  + E I NR+
Sbjct:  227 SGHKFLGAPMPCGVVLSHKLHVQRVMRNIDYIGSSDTTLSGSRNAFTPIILWYAIRSLGIEGIKQTFQQCERLAAYTADELNVRGVSAWRNPNALTVVLP-PVEDSIKTKWQIATQ-DVSHLVVTPGTTKQQADALI-ETISNRN 368          
BLAST of CX671406 vs. ExPASy Swiss-Prot
Match: DCHS_MORMO (Histidine decarboxylase OS=Morganella morganii GN=hdc PE=1 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 9.394e-22
Identity = 53/139 (38.13%), Postives = 82/139 (58.99%), Query Frame = -1
Query:  254 SGHKFVGCPMPCGVQITRMEHINVLSSNVEYRASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERPQDEEFVRRWQLACQGNIAHVVV----MPNVTIDKLDD 658
            SGHK +G P+PCG+ + + E+++ +S  ++Y ++ D TI GSRNGH P+ LW  +     + +++ + + L  A Y  DR+  AGI+A  N+ S TVVF  P  E   R   LA  G++AH++     +  V IDKL D
Sbjct:  230 SGHKMIGSPIPCGIVVAKKENVDRISVEIDYISAHDKTITGSRNGHTPLMLWEAIRSHSTEEWKRRITRSLDMAQYAVDRMQKAGINAWRNKNSITVVFPCP-SERVWREHCLATSGDVAHLITTAHHLDTVQIDKLID 367          
BLAST of CX671406 vs. ExPASy Swiss-Prot
Match: DCHS_KLEPL (Histidine decarboxylase OS=Klebsiella planticola GN=hdc PE=3 SV=4)

HSP 1 Score: 101.679 bits (252), Expect = 3.570e-21
Identity = 48/142 (33.80%), Postives = 86/142 (60.56%), Query Frame = -1
Query:  236 SGHKFVGCPMPCGVQITRMEHINVLSSNVEYRASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERPQDEEFVRRWQLACQGNIAHVVVMP-NVTIDKLDDFLNELI 658
            SGHK +G P+PCG+ + + ++++ +S  ++Y ++ D TI GSRNGH P+ +W  +    ++ +++ +++ L  A Y  DR   AGI A  N+ S TVVF  P  E   ++  LA  G+IAH++    ++   K+D  ++++I
Sbjct:  230 SGHKMIGSPIPCGIVVAKKKNVDRISVEIDYISAHDKTISGSRNGHTPLMMWEAIRSHSWEEWRRRIERSLNMAQYAVDRFQSAGIDAWRNKNSITVVFPCP-SEAVWKKHCLATSGDIAHLIATAHHLDSSKIDALIDDVI 370          
BLAST of CX671406 vs. ExPASy Swiss-Prot
Match: DCHS_PSEE4 (Histidine decarboxylase OS=Pseudomonas entomophila (strain L48) GN=hdc PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.662e-21
Identity = 54/143 (37.76%), Postives = 84/143 (58.74%), Query Frame = -1
Query:  236 SGHKFVGCPMPCGVQITRMEHINVLSSNVEYRASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERPQDEEFVRRWQLACQGNIAHVVVMPNVTIDK--LDDFLNELI 658
            SGHK +G P+PCG+ + + E++  +S +V+Y  + D TI GSRNGH P+ +W  L       +++ V+  L +A Y  DRL  AGI A  ++ S TVVF  P      R++ LA  G+ AH++  P+   DK  +D  ++E+I
Sbjct:  230 SGHKMIGSPIPCGIVVAKRENVERISVDVDYIRANDKTISGSRNGHTPMMMWAALRSHSPAQWRRRVRHSLNSAQYAVDRLQAAGIDAWRHDNSITVVFPCP-SSRIARKYCLATSGDTAHLITTPHHQ-DKSMIDALIDEVI 370          
BLAST of CX671406 vs. ExPASy Swiss-Prot
Match: DCHS_PSEFL (Histidine decarboxylase OS=Pseudomonas fluorescens GN=hdc PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.022e-20
Identity = 48/127 (37.80%), Postives = 71/127 (55.91%), Query Frame = -1
Query:  278 SGHKFVGCPMPCGVQITRMEHINVLSSNVEYRASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERPQDEEFVRRWQLACQGNIAHVVVMPN 658
            SGHK +G P+PCG+ + +  ++  +S  V+Y  + D TI GSRNGH P+ +W  L    +  ++  ++  L  A Y  DR   +GI A  NE S TVVF  P  E    ++ LA  GN AH++  P+
Sbjct:  231 SGHKMIGSPIPCGIVVAKRNNVARISVEVDYIRAHDKTISGSRNGHTPLMMWAALRSYSWAEWRHRIKHSLDTAQYAVDRFQASGIDAWRNENSITVVFPCP-SERIATKYCLATSGNSAHLITTPH 356          
BLAST of CX671406 vs. ExPASy Swiss-Prot
Match: DCHS_ACIBY (Histidine decarboxylase OS=Acinetobacter baumannii (strain AYE) GN=hdc PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.733e-20
Identity = 47/123 (38.21%), Postives = 73/123 (59.35%), Query Frame = -1
Query:  290 SGHKFVGCPMPCGVQITRMEHINVLSSNVEYRASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERPQDEEFVRRWQLACQGNIAHVV 658
            SGHK +G P+PCG+ + + +++  +S +V+Y ++RD TI GSRNGH  + +W  +  +     ++ +Q CL+ A Y  DR    GI A  N  S TVVF  P  E   ++  LA  GN+AH++
Sbjct:  230 SGHKMIGSPIPCGIVVAKRQNVERISVDVDYISTRDQTISGSRNGHTVLLMWAAIRSQTNLQRRQRIQHCLKMAQYAVDRFQAVGIPAWRNPNSITVVFPCP-SEHIWKKHYLATSGNMAHLI 351          
BLAST of CX671406 vs. ExPASy Swiss-Prot
Match: DCHS_ACIBC (Histidine decarboxylase OS=Acinetobacter baumannii (strain ACICU) GN=hdc PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.733e-20
Identity = 47/123 (38.21%), Postives = 73/123 (59.35%), Query Frame = -1
Query:  290 SGHKFVGCPMPCGVQITRMEHINVLSSNVEYRASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERPQDEEFVRRWQLACQGNIAHVV 658
            SGHK +G P+PCG+ + + +++  +S +V+Y ++RD TI GSRNGH  + +W  +  +     ++ +Q CL+ A Y  DR    GI A  N  S TVVF  P  E   ++  LA  GN+AH++
Sbjct:  230 SGHKMIGSPIPCGIVVAKRQNVERISVDVDYISTRDQTISGSRNGHTVLLMWAAIRSQTNLQRRQRIQHCLKMAQYAVDRFQAVGIPAWRNPNSITVVFPCP-SEHIWKKHYLATSGNMAHLI 351          
The following BLAST results are available for this feature:
BLAST of CX671406 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
DCHS_SOLLC1.941e-5155.17Histidine decarboxylase OS=Solanum lycopersicum GN... [more]
DCHS_VIBAN4.075e-2539.44Histidine decarboxylase OS=Vibrio anguillarum GN=h... [more]
DCHS_VIBHB5.322e-2539.60Histidine decarboxylase OS=Vibrio harveyi (strain ... [more]
DCHS_RHILO4.505e-2440.00Histidine decarboxylase OS=Rhizobium loti GN=hdc P... [more]
DCHS_MORMO9.394e-2238.13Histidine decarboxylase OS=Morganella morganii GN=... [more]
DCHS_KLEPL3.570e-2133.80Histidine decarboxylase OS=Klebsiella planticola G... [more]
DCHS_PSEE44.662e-2137.76Histidine decarboxylase OS=Pseudomonas entomophila... [more]
DCHS_PSEFL3.022e-2037.80Histidine decarboxylase OS=Pseudomonas fluorescens... [more]
DCHS_ACIBY6.733e-2038.21Histidine decarboxylase OS=Acinetobacter baumannii... [more]
DCHS_ACIBC6.733e-2038.21Histidine decarboxylase OS=Acinetobacter baumannii... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_10H05_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-10H05-O10-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671406 ID=CX671406; Name=CX671406; organism=Citrus sinensis; type=EST; length=658bp
TTTTTTAAAAACGTAACTAATATGAAACATTATAGAACCTGGAAAATGTT
GCCGATACAAATTCTGATTCCATTACAAATAAAGAATTCTGCTACAACAA
GACAACAAACTGAAACAATCCTAAGCCATAATGATTTCACTTGTGCGCAG
CACAAACACAATTCTCACTTCCTATATCTGCTGCAATGCAAGGAGGCTGT
CTTTTTCCATCCTCATACCATGTTGAGCGATTGTCTATTAACTCGTTCAA
GAAATCATCCAGCTTGTCAATTGTGACATTGGGCATCACTACTACATGTG
CAATGTTACCTTGGCAAGCAAGCTGCCACCTACGGACAAACTCTTCATCT
TGAGGACGCTCAAACACAACGGTGCTGCTAAGCTCATTCAACATGGCACT
AATCCCAGCATCAAGAAGGCGGTCCTTCAAGTAGTGAGCATTTCTAAGAC
ACTTCTGGACTTCTTTCTGGAACCCTTTGTAACCTTTTCTATTGAGGGTG
TACCAGAGGAAGATAGGAGCATGGCCATTTCGGCTTCCCATGATTGTGGC
ATCTCTTGAAGCACGGTACTCTACATTGCTTGAAAGGACATTGATGTGTT
CCATTCTCGTTATTTGAACACCACAAGGCATTGGACATCCCACAAATTTG
TGGCCTGA
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