CX671403

Overview
NameCX671403
Unique NameCX671403
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length774
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671403 vs. ExPASy Swiss-Prot
Match: ILV5_ARATH (Ketol-acid reductoisomerase, chloroplastic OS=Arabidopsis thaliana GN=At3g58610 PE=2 SV=2)

HSP 1 Score: 181.03 bits (458), Expect = 6.151e-45
Identity = 89/98 (90.82%), Postives = 90/98 (91.84%), Query Frame = -3
Query:  479 SLNPFMHVRGVSFMVDNCSTTARWGSRKWAPRFDYILTQQALVAVDNDAPINGDLISNFLSDPVHGAIEVCAQLRPTVDISVPPDADFVRPELRQGSN 772
            SLNPFMH RGVSFMVDNCSTTAR GSRKWAPRFDYILTQQALVAVD+ A IN DLISNF SDPVHGAIEVCAQLRPTVDISVP DADFVRPELRQ SN
Sbjct:  494 SLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYILTQQALVAVDSGAAINRDLISNFFSDPVHGAIEVCAQLRPTVDISVPADADFVRPELRQSSN 591          
BLAST of CX671403 vs. ExPASy Swiss-Prot
Match: ILV5_ORYSJ (Ketol-acid reductoisomerase, chloroplastic OS=Oryza sativa subsp. japonica GN=Os05g0573700 PE=1 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 6.800e-44
Identity = 85/97 (87.63%), Postives = 89/97 (91.75%), Query Frame = -3
Query:  482 SLNPFMHVRGVSFMVDNCSTTARWGSRKWAPRFDYILTQQALVAVDNDAPINGDLISNFLSDPVHGAIEVCAQLRPTVDISVPPDADFVRPELRQGS 772
            SLNPFMH RGV+FMVDNCSTTAR GSRKWAPRFDYILTQQA V VD DAPIN DLISNF+SDPVHGAIEVCA+LRPTVDISVP +ADFVRPELRQ S
Sbjct:  482 SLNPFMHARGVAFMVDNCSTTARLGSRKWAPRFDYILTQQAFVTVDKDAPINQDLISNFMSDPVHGAIEVCAELRPTVDISVPANADFVRPELRQSS 578          
BLAST of CX671403 vs. ExPASy Swiss-Prot
Match: ILV5_PEA (Ketol-acid reductoisomerase, chloroplastic OS=Pisum sativum GN=PGAAIR PE=2 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.160e-43
Identity = 86/98 (87.76%), Postives = 91/98 (92.86%), Query Frame = -3
Query:  479 SLNPFMHVRGVSFMVDNCSTTARWGSRKWAPRFDYILTQQALVAVDNDAPINGDLISNFLSDPVHGAIEVCAQLRPTVDISVPPDADFVRPELRQGSN 772
            SLNPFMH RGVSFMVDNCSTTAR GSRKWAPRFDYILTQQALVAVD+ APIN DLISNF+SDPVHGAI+VCA+LRPT+DISVP  ADFVRPELRQ SN
Sbjct:  484 SLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYILTQQALVAVDSGAPINQDLISNFVSDPVHGAIQVCAELRPTLDISVPAAADFVRPELRQCSN 581          
BLAST of CX671403 vs. ExPASy Swiss-Prot
Match: ILV5_SPIOL (Ketol-acid reductoisomerase, chloroplastic OS=Spinacia oleracea GN=AHRI PE=1 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 3.731e-42
Identity = 85/95 (89.47%), Postives = 87/95 (91.58%), Query Frame = -3
Query:  488 SLNPFMHVRGVSFMVDNCSTTARWGSRKWAPRFDYILTQQALVAVDNDAPINGDLISNFLSDPVHGAIEVCAQLRPTVDISVPPDADFVRPELRQ 772
            SLNPFMH RGVSFMVDNCSTTAR GSRKWAPRFDYIL+QQALVAVDN APIN DLISNFLSDPVH AI VCAQLRP+VDISV  DADFVRPELRQ
Sbjct:  500 SLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYILSQQALVAVDNGAPINQDLISNFLSDPVHEAIGVCAQLRPSVDISVTADADFVRPELRQ 594          
The following BLAST results are available for this feature:
BLAST of CX671403 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
ILV5_ARATH6.151e-4590.82Ketol-acid reductoisomerase, chloroplastic OS=Arab... [more]
ILV5_ORYSJ6.800e-4487.63Ketol-acid reductoisomerase, chloroplastic OS=Oryz... [more]
ILV5_PEA1.160e-4387.76Ketol-acid reductoisomerase, chloroplastic OS=Pisu... [more]
ILV5_SPIOL3.731e-4289.47Ketol-acid reductoisomerase, chloroplastic OS=Spin... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS10_10H03_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-10H03-O6-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671403 ID=CX671403; Name=CX671403; organism=Citrus sinensis; type=EST; length=774bp
GTCATTGTTATACATATAAAATCTCTCCGGACACTTTCAGTTACTTGTTC
GTATCTCAGTAACCAACAAATTGCCTACACTTGTCAAATTAACAGACATT
GTGTAGATCCGCCACTTAAACCTTAAAAGACTGTTATCATTGCCTTTTAA
ATATTTAAGCCTGGTGATGCACAAACTTAATTATCATTTTAAATTTATCA
GATAGCTCAGTGGACTAACACATGCGCATAAAATCAAAACAAGATGTATT
CTGTCAGCGCATTCCTCGGAAACATACTATTATTCCACCAAATTCAAAAA
CCAGAAGCATATTCTCATGTCTTCTTCAACAAAACCGGACATAGTGCAAC
ACTCGCCCAGCACACTAAATAAATAAGCGGCAACTCACACGACTAAGCAA
AGTCTCTACCTCCAATATCCCTAGGGGGAATTATTTTTTGGGCTAGAAAC
AAAAAAATTAAGGACTCACCAGGACTCAATTGCTACCCTGACGCAACTCT
GGGCGCACAAAATCTGCATCTGGTGGCACTGAAATGTCAACAGTTGGTCT
CAACTGAGCACAGACTTCAATGGCTCCATGGACTGGATCAGAAAGGAAGT
TGCTGATGAGATCCCCATTGATGGGGGCATCATTGTCCACTGCCACCAAG
GCTTGTTGTGTCAGGATGTAATCAAAACGAGGGGCCCATTTCCTTGATCC
CCAACGGGCTGTGGTAGAGCAGTTGTCCACCATAAATGAAACTCCACGAA
CATGCATGAATGGATTCAATGAAT
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