CX671402

Overview
NameCX671402
Unique NameCX671402
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length731
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3530 contig Csv1_Contig3530:149..879. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX671402 vs. ExPASy Swiss-Prot
Match: ILV5_ARATH (Ketol-acid reductoisomerase, chloroplastic OS=Arabidopsis thaliana GN=At3g58610 PE=2 SV=2)

HSP 1 Score: 310.842 bits (795), Expect = 4.695e-84
Identity = 169/239 (70.71%), Postives = 186/239 (77.82%), Query Frame = 1
Query:   37 SPSPSSETL----KEALKHLNLASFSSTAKSLRALKTTTG----RGSALSAWMASETALKTPFLLDFETSVFKKDMISLADRDEYIVRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSIXXXXXXXXXXXXQSMGLDFPKNIGVIAVCPKGMGPSVRR 729
            SPS SS+TL       L   N+   SS++KSLR+L  T       GS+L+A M S +A+K P  LDFETSVFKK+ +SLA  +EYIVRGGRDLF  LPDAF GI QIGVIGWGSQGPAQAQNLRDSL EAKSDIVVK+GLRKGSRSF EARAAGFTEE+GTLGDI+ETI+GSDLVLLLISDAAQADNYEKIFS MKPNSI            QS GLDFPKNI V+AVCPKGMGPSVRR
Sbjct:   16 SPSSSSKTLWSSKARTLALPNIGFLSSSSKSLRSLTATVAGNGATGSSLAARMVSSSAVKAPVSLDFETSVFKKEKVSLAGYEEYIVRGGRDLFKHLPDAFKGIKQIGVIGWGSQGPAQAQNLRDSLVEAKSDIVVKIGLRKGSRSFEEARAAGFTEESGTLGDIWETIAGSDLVLLLISDAAQADNYEKIFSHMKPNSILGLSHGFLLGHLQSSGLDFPKNISVVAVCPKGMGPSVRR 254          
BLAST of CX671402 vs. ExPASy Swiss-Prot
Match: ILV5_SPIOL (Ketol-acid reductoisomerase, chloroplastic OS=Spinacia oleracea GN=AHRI PE=1 SV=1)

HSP 1 Score: 292.352 bits (747), Expect = 1.728e-78
Identity = 160/256 (62.50%), Postives = 187/256 (73.05%), Query Frame = 1
Query:    1 ATLPFSRPIPKFSPSPSSETLKEALK----HLNLASFSSTAKSLRALKTT-------TGRGSALSAWMASETALKTPFL--LDFETSVFKKDMISLADRDEYIVRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSIXXXXXXXXXXXXQSMGLDFPKNIGVIAVCPKGMGPSVRR 729
            A   FS      + + +S+ LK++ K    +L     SST K+ R+LK          G GSALSA M S  ++ TP     DF++SVFKK+ ++L+  DEYIVRGGR+LF LLPDAF GI QIGVIGWGSQ PAQAQNL+DSL EAKSD+VVK+GLRKGS SFAEARAAGF+EENGTLGD++ETISGSDLVLLLISD+AQADNYEK+FS MKPNSI            QS+G DFPKNI VIAVCPKGMGPSVRR
Sbjct:    5 AATTFSLSSSSSTSAAASKALKQSPKPSALNLGFLGSSSTIKACRSLKAARVLPSGANGGGSALSAQMVSAPSINTPSATTFDFDSSVFKKEKVTLSGHDEYIVRGGRNLFPLLPDAFKGIKQIGVIGWGSQAPAQAQNLKDSLTEAKSDVVVKIGLRKGSNSFAEARAAGFSEENGTLGDMWETISGSDLVLLLISDSAQADNYEKVFSHMKPNSILGLSHGFLLGHLQSLGQDFPKNISVIAVCPKGMGPSVRR 260          
BLAST of CX671402 vs. ExPASy Swiss-Prot
Match: ILV5_PEA (Ketol-acid reductoisomerase, chloroplastic OS=Pisum sativum GN=PGAAIR PE=2 SV=1)

HSP 1 Score: 287.73 bits (735), Expect = 4.257e-77
Identity = 158/233 (67.81%), Postives = 177/233 (75.97%), Query Frame = 1
Query:   43 SPSSETLKE----ALKHLNLASFSSTAKSLRALKTTTGRGSALSAWMASETALKTPFLLDFETSVFKKDMISLADRDEYIVRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSIXXXXXXXXXXXXQSMGLDFPKNIGVIAVCPKGMGPSVRR 729
            S SS+TL +    +    NL+    + +S+RA ++ T  GSAL A   S      P  LDFETSVFKK+ ++LA  +EYIVRGGRDLF+LLPDAF GI QIGVIGWGSQGPAQAQNLRDSL EAKSDIVVKVGLRKGS SF EAR AGF+EE GTLGDI+ETISGSDLVLLLISD+AQADNYEKIFS +KPNSI            QS+GLDFPKN  VIAVCPKGMGPSVRR
Sbjct:   13 SASSKTLAKPVAASFAPTNLSFSKLSPQSIRARRSITV-GSALGATKVSAPPATHPVSLDFETSVFKKERVNLAGHEEYIVRGGRDLFHLLPDAFKGIKQIGVIGWGSQGPAQAQNLRDSLVEAKSDIVVKVGLRKGSSSFNEAREAGFSEEKGTLGDIWETISGSDLVLLLISDSAQADNYEKIFSHLKPNSILGLSHGFLLGHLQSIGLDFPKNFSVIAVCPKGMGPSVRR 244          
BLAST of CX671402 vs. ExPASy Swiss-Prot
Match: ILV5_ORYSJ (Ketol-acid reductoisomerase, chloroplastic OS=Oryza sativa subsp. japonica GN=Os05g0573700 PE=1 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 3.373e-74
Identity = 146/196 (74.49%), Postives = 162/196 (82.65%), Query Frame = 1
Query:  145 RGSALSAWMASETALKTPF-LLDFETSVFKKDMISLADRDEYIVRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSIXXXXXXXXXXXXQSMGLDFPKNIGVIAVCPKGMGPSVRR 729
            R  A++A +A+  A+      LDF+TSVF K+ +SLA  +EYIVRGGR+LF LLP+AF GI QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK+GLRKGS+SF EARAAGFTEE+GTLGDI+ET+SGSDLVLLLISDAAQADNYEKIFS MKPNSI            QS GLDFPKNI VIAVCPKGMGPSVRR
Sbjct:   47 RRRAVTAMVAAPPAVGAAMPSLDFDTSVFNKEKVSLAGHEEYIVRGGRNLFPLLPEAFKGIKQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKIGLRKGSKSFDEARAAGFTEESGTLGDIWETVSGSDLVLLLISDAAQADNYEKIFSHMKPNSILGLSHGFLLGHLQSAGLDFPKNISVIAVCPKGMGPSVRR 242          
BLAST of CX671402 vs. ExPASy Swiss-Prot
Match: ILVC_HELAH (Ketol-acid reductoisomerase OS=Helicobacter acinonychis (strain Sheeba) GN=ilvC PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.178e-12
Identity = 47/134 (35.07%), Postives = 71/134 (52.99%), Query Frame = 1
Query:  328 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEK-IFSCMKPNSIXXXXXXXXXXXXQSMGLDFPKNIGVIAVCPKGMGPSVR 726
            Q+G+IG+G+QG AQA NLRD      S + V+VGL +GS S  +A+A GF      + ++ E +  SD+++ L+ D    +  EK +   +K   I            Q   + F K +GVI V PKG G ++R
Sbjct:   20 QVGIIGYGTQGEAQALNLRD------SKVKVRVGLYQGSLSIPKAKAEGF-----EVLEVKELVQKSDVIMALLPDELHKEVLEKEVIPFLKEGQIVGFAHGFSVHFNQ---VSFKKGVGVILVAPKGPGSALR 139          
BLAST of CX671402 vs. ExPASy Swiss-Prot
Match: ILVC_HELPS (Ketol-acid reductoisomerase OS=Helicobacter pylori (strain Shi470) GN=ilvC PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.822e-11
Identity = 46/134 (34.33%), Postives = 70/134 (52.24%), Query Frame = 1
Query:  328 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEK-IFSCMKPNSIXXXXXXXXXXXXQSMGLDFPKNIGVIAVCPKGMGPSVR 726
            Q+G+IG+G+QG AQA NLRD      S + V++GL +GS S  +A+A GF      + ++ E +  SDL++ L+ D    +  EK +   +K   I            Q +    PK +G I V PKG G ++R
Sbjct:   20 QVGIIGYGAQGEAQALNLRD------SKVKVRIGLYQGSLSVPKAKAEGF-----EVLEVKELVQQSDLIMALLPDELHKEVLEKEVIPFLKEGQIVGFAHGFSVHFNQVV---LPKGVGAILVAPKGPGSALR 139          
BLAST of CX671402 vs. ExPASy Swiss-Prot
Match: ILVC_LEPBP (Ketol-acid reductoisomerase OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris) GN=ilvC PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.059e-11
Identity = 51/134 (38.06%), Postives = 69/134 (51.49%), Query Frame = 1
Query:  331 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPN-SIXXXXXXXXXXXXQSMGLDFPKNIGVIAVCPKGMGPSVRR 729
            I VIG+GSQG AQAQN++D      S + V +GLR GS+S  EA+ AGF   N     + E    +D++ +L  D  QAD Y+   + ++PN S                 +  PKN+ V  V PKG G  VRR
Sbjct:   20 IAVIGYGSQGHAQAQNMKD------SGLKVIIGLRDGSKSVKEAKEAGFEVYN-----VAEASKKADIIQILAPDTIQADMYK---ADIEPNLSEGKALVFSHGFNIHYDLITPPKNVDVYMVAPKGPGHLVRR 139          
BLAST of CX671402 vs. ExPASy Swiss-Prot
Match: ILVC_LEPBA (Ketol-acid reductoisomerase OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / Ames) GN=ilvC PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.059e-11
Identity = 51/134 (38.06%), Postives = 69/134 (51.49%), Query Frame = 1
Query:  331 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPN-SIXXXXXXXXXXXXQSMGLDFPKNIGVIAVCPKGMGPSVRR 729
            I VIG+GSQG AQAQN++D      S + V +GLR GS+S  EA+ AGF   N     + E    +D++ +L  D  QAD Y+   + ++PN S                 +  PKN+ V  V PKG G  VRR
Sbjct:   20 IAVIGYGSQGHAQAQNMKD------SGLKVIIGLRDGSKSVKEAKEAGFEVYN-----VAEASKKADIIQILAPDTIQADMYK---ADIEPNLSEGKALVFSHGFNIHYDLITPPKNVDVYMVAPKGPGHLVRR 139          
BLAST of CX671402 vs. ExPASy Swiss-Prot
Match: ILVC_HELPY (Ketol-acid reductoisomerase OS=Helicobacter pylori GN=ilvC PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.923e-11
Identity = 44/134 (32.84%), Postives = 70/134 (52.24%), Query Frame = 1
Query:  328 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEK-IFSCMKPNSIXXXXXXXXXXXXQSMGLDFPKNIGVIAVCPKGMGPSVR 726
            Q+G+IG+G+QG AQA NLRDS  +A      ++GL +GS S ++A+  GF      + ++ E +  SD+++ L+ D    +  EK +   +K   I            Q +    PK +G I V PKG G ++R
Sbjct:   20 QVGIIGYGAQGEAQALNLRDSKVKA------RIGLYQGSLSVSKAKKEGF-----EVLEVKELVQNSDVIMALLPDELHKEVLEKEVIPFLKEGQIVGFAHGFSVHFNQVV---LPKGVGAILVAPKGPGSALR 139          
BLAST of CX671402 vs. ExPASy Swiss-Prot
Match: ILVC_HELPH (Ketol-acid reductoisomerase OS=Helicobacter pylori (strain HPAG1) GN=ilvC PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.042e-11
Identity = 46/134 (34.33%), Postives = 70/134 (52.24%), Query Frame = 1
Query:  328 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEK-IFSCMKPNSIXXXXXXXXXXXXQSMGLDFPKNIGVIAVCPKGMGPSVR 726
            Q+G+IG+G+QG AQA NLRD      S + V++GL +GS S ++A+  GF      LG + E +  SD+++ L+ D    +  EK +   +K   I            Q +    PK +G I V PKG G ++R
Sbjct:   20 QVGIIGYGAQGEAQALNLRD------SKVKVRIGLYQGSLSVSKAKKEGFE----VLG-VKELVQQSDVIMALLPDELHKEVLEKEVIPFLKEGQIVGFAHGFSVHFNQVV---LPKGVGAILVAPKGPGSALR 139          
The following BLAST results are available for this feature:
BLAST of CX671402 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
ILV5_ARATH4.695e-8470.71Ketol-acid reductoisomerase, chloroplastic OS=Arab... [more]
ILV5_SPIOL1.728e-7862.50Ketol-acid reductoisomerase, chloroplastic OS=Spin... [more]
ILV5_PEA4.257e-7767.81Ketol-acid reductoisomerase, chloroplastic OS=Pisu... [more]
ILV5_ORYSJ3.373e-7474.49Ketol-acid reductoisomerase, chloroplastic OS=Oryz... [more]
ILVC_HELAH8.178e-1235.07Ketol-acid reductoisomerase OS=Helicobacter acinon... [more]
ILVC_HELPS1.822e-1134.33Ketol-acid reductoisomerase OS=Helicobacter pylori... [more]
ILVC_LEPBP4.059e-1138.06Ketol-acid reductoisomerase OS=Leptospira biflexa ... [more]
ILVC_LEPBA4.059e-1138.06Ketol-acid reductoisomerase OS=Leptospira biflexa ... [more]
ILVC_HELPY6.923e-1132.84Ketol-acid reductoisomerase OS=Helicobacter pylori... [more]
ILVC_HELPH9.042e-1134.33Ketol-acid reductoisomerase OS=Helicobacter pylori... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS10_10H03_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-10H03-O6-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671402 ID=CX671402; Name=CX671402; organism=Citrus sinensis; type=EST; length=731bp
GCTACTTTACCATTTAGTCGCCCGATCCCCAAATTTAGTCCATCGCCGTC
GTCCGAAACCCTAAAAGAAGCACTCAAGCATCTCAATCTAGCGTCTTTCT
CATCCACCGCGAAGTCCTTGAGAGCTCTCAAAACTACTACAGGCAGGGGC
TCAGCTCTCAGCGCTTGGATGGCGTCCGAGACAGCTCTCAAGACACCTTT
CTTGCTGGATTTTGAGACATCTGTCTTTAAGAAGGACATGATATCCCTGG
CTGACCGCGATGAGTACATTGTGAGAGGAGGAAGGGATTTGTTTAACTTG
CTGCCGGACGCATTCAACGGGATTAACCAGATTGGGGTGATTGGCTGGGG
TTCCCAGGGACCTGCCCAAGCTCAGAATTTGAGGGATTCCCTTGCTGAAG
CTAAATCTGATATTGTTGTCAAGGTTGGGCTTAGGAAGGGCTCTCGTTCT
TTTGCTGAAGCTCGTGCTGCTGGTTTTACTGAAGAGAATGGAACTTTGGG
GGATATATATGAAACTATTTCAGGCAGTGATCTTGTGTTATTATTGATTT
CTGATGCTGCTCAGGCGGATAATTATGAGAAGATATTCTCTTGCATGAAA
CCAAACAGCATCCTTGGACTTTCCCATGGGTTCCTTCTTGGGCATTTGCA
GTCAATGGGACTTGATTTCCCAAAGAATATCGGTGTGATTGCTGTGTGTC
CCAAGGGAATGGGTCCATCTGTGAGGAGACT
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