CX671401 | Citrus Genome Database

Overview


Name	CX671401
Unique Name	CX671401
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	696

Libraries


Library Name	Type
Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig5051	contig	Csv1_Contig5051:1..696.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

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BLAST of CX671401 vs. ExPASy Swiss-Prot
Match: C3H3_ARATH (Zinc finger CCCH domain-containing protein 3 OS=Arabidopsis thaliana GN=At1g04990 PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 5.520e-39
Identity = 83/179 (46.37%), Postives = 105/179 (58.66%), Query Frame = 2

Query:    2 SVLPSSGLQYAGSLPTWSLQRAPYLSSRLQGTQSYMPLIVSPSQGIVPAPGWNTYMGNIGPLSPTSIAGSNLIYSSRNQGDL-GAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAGYP 535
            S  P++ L+YA  L   S         R Q  QSY+P++VSPSQG +P  GW  YM           A SN +Y+ +NQ    G+ A M +  A ++ L E  DQP+CR++MNTGTCKYG DCK+ HP  RI+Q   S I P  LP+RPGQ  C N+  YG CKFGP C+FDHP   YP
Sbjct:  174 SSFPAADLRYASGLTMMSTYGT---LPRPQVPQSYVPILVSPSQGFLPPQGWAPYM-----------AASNSMYNVKNQPYYSGSSASMAMAVALNRGLSESSDQPECRFFMNTGTCKYGDDCKYSHPGVRISQPPPSLINPFVLPARPGQPACGNFRSYGFCKFGPNCKFDHPMLPYP 338

HSP 2 Score: 90.5077 bits (223), Expect = 9.162e-18
Identity = 43/90 (47.78%), Postives = 54/90 (60.00%), Query Frame = 2

Query:  287 QNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKERI-AQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYA--GYPINYG 547
            + LPER  QPDC Y++ TG CKYG  CK+HHPK+R  AQ    N+  +GLP R G+  C  Y   G C+FG  C+F HP    G+   YG
Sbjct:   85 EELPERIGQPDCEYFLKTGACKYGPTCKYHHPKDRNGAQPVMFNV--IGLPMRLGEKPCPYYLRTGTCRFGVACKFHHPQPDNGHSTAYG 172

HSP 3 Score: 74.3294 bits (181), Expect = 6.794e-13
Identity = 39/116 (33.62%), Postives = 60/116 (51.72%), Query Frame = 2

Query:  182 PLSPTSIAGSNLIYSSRNQGDLGAGAQMHILSASSQNL---PERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHP 520
            P+S T    S+L+    +     A  +M +     + L   P+RP + DC++Y+ TG C YG+ C+++HP   + Q  A       LP R GQ  C  +   G CK+GPTC++ HP
Sbjct:    4 PMSDTQHVQSSLVSIRSSDKIEDAFRKMKVNETGVEELNPYPDRPGERDCQFYLRTGLCGYGSSCRYNHP-THLPQDVA--YYKEELPERIGQPDCEYFLKTGACKYGPTCKYHHP 116

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BLAST of CX671401 vs. ExPASy Swiss-Prot
Match: ZFNL_PEA (Zinc finger CCCH domain-containing protein ZFN-like OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.041e-37
Identity = 81/186 (43.55%), Postives = 110/186 (59.14%), Query Frame = 2

Query:   29 YAGSLPTWSLQRAPYLSS-RLQGTQSYMPLIVSPSQGIVPAPGWNTYMGNIGPLSPTSIAGSNLIYSSRNQGDL-GAGAQ------------MHILSASSQNL-PERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAGYPIN 541
            YA  +  WS   + Y+ S R QG  SY PLI+   QG+V  PGW+TY G +G  SP     ++  Y + +QG+L  AG Q            +   +    N+ PERPDQP+C++YM TG CK+GA C+FHHP+ER   +    + P+GLP RPG+ +C  YS YGICKFGP+C+FDHP   +  N
Sbjct:  176 YAAGITNWS--SSSYVPSPRWQGPSSYAPLILP--QGVVSVPGWSTYGGQMGSESPQQTMRNDQTYGTSHQGELENAGLQGAYSQYRSGSVPVGFYALQRDNIFPERPDQPECQFYMKTGDCKFGAVCRFHHPRERQIPAPDCVLSPIGLPLRPGEPLCVFYSRYGICKFGPSCKFDHPMGIFTYN 357

HSP 2 Score: 90.5077 bits (223), Expect = 9.162e-18
Identity = 37/75 (49.33%), Postives = 50/75 (66.67%), Query Frame = 2

Query:  296 PERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHP 520
            PER  QP+C+YY+ TGTCK+GA C+FHHPK++   +    +  LG P RP ++  + Y   G CKFG TC+F HP
Sbjct:   73 PERLGQPECQYYLKTGTCKFGATCRFHHPKDKAGVAGRVALNILGYPLRPNESERAYYLRTGQCKFGNTCKFHHP 147

HSP 3 Score: 83.1889 bits (204), Expect = 1.463e-15
Identity = 41/91 (45.05%), Postives = 53/91 (58.24%), Query Frame = 2

Query:  260 QMHILSASSQN---LPERPDQPDCRYYMNTGTCKYGADCKFHHPKER-IAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHP 520
            QM++ S+ +      PE P +PDC YY+ TG C++GA C+F+HP  R +A + A   G    P R GQ  C  Y   G CKFG TCRF HP
Sbjct:   13 QMNLRSSETMESGPYPEHPGEPDCSYYIRTGLCRFGATCRFNHPPNRKLAIATARMKGE--FPERLGQPECQYYLKTGTCKFGATCRFHHP 101

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BLAST of CX671401 vs. ExPASy Swiss-Prot
Match: C3H12_ORYSJ (Zinc finger CCCH domain-containing protein 12 OS=Oryza sativa subsp. japonica GN=Os01g0917400 PE=2 SV=2)

HSP 1 Score: 152.91 bits (385), Expect = 1.503e-36
Identity = 77/193 (39.90%), Postives = 107/193 (55.44%), Query Frame = 2

Query:   14 SSGLQYAGSLPTWSLQRAPYLSS-RLQGTQSYMPLIVSPSQGIVPAPGWNTYMGNIGPLSPTSIA----GSNLIYSSRNQGDLGAGAQMHILSASSQN-------------LPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAGYPI 538
            ++G  Y G++ +W+  R  ++ S R Q   +Y P+IV   QG+V  P WN+Y G + P+S +       G+   Y +  Q D  AG Q  +    S +              PERPDQP+C+YYM TG CK+GA CKFHHP+ R   +    + P+GLP RPG+ +C  YS YGICKFG  C+FDHP    P+
Sbjct:  220 TAGPPYTGTMASWAFPRGSFIPSPRWQNPSNYAPMIVP--QGLVQVPSWNSYTGQMMPVSSSESRLQSPGAQQTYGTSQQVDASAGNQGMLSPYRSSSYPVPQYALQRENVFPERPDQPECQYYMKTGDCKFGAVCKFHHPRVRSMPTPDCVLSPVGLPLRPGEELCKFYSRYGICKFGANCKFDHPTMAPPM 410

HSP 2 Score: 93.9745 bits (232), Expect = 8.286e-19
Identity = 37/75 (49.33%), Postives = 49/75 (65.33%), Query Frame = 2

Query:  296 PERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHP 520
            PER  QP+C+YY+ TGTCK+G  CKFHHP+E+   +    +  LG P RP +  C+ Y   G CK+G TC+F HP
Sbjct:  123 PERMGQPECQYYLKTGTCKFGPTCKFHHPREKAGIAGRVQLNTLGYPLRPSEKECAYYLKTGQCKYGNTCKFHHP 197

HSP 3 Score: 83.9593 bits (206), Expect = 8.575e-16
Identity = 37/76 (48.68%), Postives = 49/76 (64.47%), Query Frame = 2

Query:  296 PERPDQPDCRYYMNTGTCKYGADCKFHHPKER-IAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHP 520
            PER  +PDC YY+ TG C++G  C+F+HP++R +A ++A   G    P R GQ  C  Y   G CKFGPTC+F HP
Sbjct:   78 PERSGEPDCTYYLRTGLCRFGMSCRFNHPQDRNLAIASARMKGE--YPERMGQPECQYYLKTGTCKFGPTCKFHHP 151

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BLAST of CX671401 vs. ExPASy Swiss-Prot
Match: C3H63_ORYSJ (Zinc finger CCCH domain-containing protein 63 OS=Oryza sativa subsp. japonica GN=Os11g0472000 PE=2 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 3.349e-36
Identity = 97/248 (39.11%), Postives = 126/248 (50.81%), Query Frame = 2

Query:    2 SVLPSSGLQYAGSLPTWSLQR-APYLSS-RLQGTQSYMPLIVSPSQGIVPAPGWNTYMGNIGPLSPT----SIAGSNLIYSSR-----NQGDLG-------AGAQMHILSASSQNL-PERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAGYPINYGXXXXXXXXXXXXXMNHQAISATHSIETSPDASSKIPNWVQNSDAVSV 688
            SV   S   Y G++  W L R A +++S R  G  SY  +IV P  G+V  PGWN Y   IG  S      +  G+     SR     N GD G           + + +   +++ PERPDQP+C++YM TG CK+GA CKFHHPKERI  +    +  LGLP RPG+ IC+ YS YGICKFGP C+FDHP     + YG             M   A    HS E SPD  S     + +SD+  +
Sbjct:  192 SVTSPSQHTYPGAVTNWPLSRSASFIASPRWPGHSSYAQVIVPP--GLVQVPGWNPYAAQIGSSSSDDQQRTAGGAQYYTGSRHSETPNMGDQGMFSSYQAGSVPLGLYTVQRESIFPERPDQPECQFYMKTGDCKFGAVCKFHHPKERIIPTPNCALSSLGLPLRPGEPICTFYSRYGICKFGPNCKFDHPMG--TVMYGLATSPTGDVSARRM--LAPVPAHS-EVSPDNVSGRSRRITHSDSQQI 432

HSP 2 Score: 97.4413 bits (241), Expect = 7.495e-20
Identity = 39/75 (52.00%), Postives = 51/75 (68.00%), Query Frame = 2

Query:  296 PERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHP 520
            P+R  QP+C+YY+ TGTCK+GA CKFHHP+E+ A +    +  LG P RP +  C+ Y   G CKFG TC+F HP
Sbjct:   99 PQRIGQPECQYYLKTGTCKFGATCKFHHPREKAAIATRVQLNALGYPLRPNEKECAYYLRTGQCKFGSTCKFHHP 173

HSP 3 Score: 82.0333 bits (201), Expect = 3.259e-15
Identity = 39/76 (51.32%), Postives = 47/76 (61.84%), Query Frame = 2

Query:  296 PERPDQPDCRYYMNTGTCKYGADCKFHHPKER-IAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHP 520
            PER  +PDC YYM TG C++G  CKF+HP +R +A +AA   G    P R GQ  C  Y   G CKFG TC+F HP
Sbjct:   54 PERIGEPDCSYYMRTGLCRFGMTCKFNHPADRKMAVAAARMKGE--YPQRIGQPECQYYLKTGTCKFGATCKFHHP 127

[Close]

BLAST of CX671401 vs. ExPASy Swiss-Prot
Match: C3H66_ORYSJ (Zinc finger CCCH domain-containing protein 66 OS=Oryza sativa subsp. japonica GN=Os12g0405100 PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.272e-35
Identity = 78/186 (41.94%), Postives = 105/186 (56.45%), Query Frame = 2

Query:   29 YAGSLPTWSLQR-APYLSS-RLQGTQSYMPLIVSPSQGIVPAPGWNTYMGNIGPLSP-------------------TSIAGSNLIYSSRNQGDLGAGAQMHILSASSQNL-PERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHP 520
            Y G++  W+L R A +++S R  G   Y  +IV   QG+V  PGWN Y   +G  SP                   T   G + +Y S   G +  G    + +   +N+ PERPDQP+C++YM TG CK+GA CKFHHPKER+  +    +  LGLP RPG+ +C+ YS YGICKFGP C+FDHP
Sbjct:  211 YPGAVTNWTLSRSASFIASPRWPGHSGYAQVIVP--QGLVQVPGWNPYAAQMGSSSPDDQQRTPVTTQYYGSRQSETGGMGDHGMYQSYQGGSVPVG----VYTVQGENIFPERPDQPECQFYMKTGDCKFGAVCKFHHPKERLVPAPNCALNSLGLPLRPGEPVCTFYSRYGICKFGPNCKFDHP 390

HSP 2 Score: 93.5893 bits (231), Expect = 1.082e-18
Identity = 38/75 (50.67%), Postives = 49/75 (65.33%), Query Frame = 2

Query:  296 PERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHP 520
            P R  QP+C+YY+ TGTCK+GA CKFHHP+E+ A +    +  LG P RP +  C+ Y   G CKF  TC+F HP
Sbjct:  109 PYRVGQPECQYYLKTGTCKFGATCKFHHPREKAALANRVQLNVLGYPMRPNEKECAYYLRTGQCKFASTCKFHHP 183

HSP 3 Score: 83.1889 bits (204), Expect = 1.463e-15
Identity = 43/95 (45.26%), Postives = 50/95 (52.63%), Query Frame = 2

Query:  236 QGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHP 520
            Q  LG G  M      S   PER  +PDC YYM TG C++G  CKF+HP  R    AA+ +     P R GQ  C  Y   G CKFG TC+F HP
Sbjct:   49 QMTLGGGESME-----STPYPERIGEPDCSYYMRTGLCRFGMTCKFNHPPNRKLAVAAARMNG-EYPYRVGQPECQYYLKTGTCKFGATCKFHHP 137

[Close]

BLAST of CX671401 vs. ExPASy Swiss-Prot
Match: C3H26_ARATH (Zinc finger CCCH domain-containing protein 26 OS=Arabidopsis thaliana GN=ZFN2 PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 6.315e-35
Identity = 75/183 (40.98%), Postives = 104/183 (56.83%), Query Frame = 2

Query:    2 SVLPSSGLQYAGSLPTWSLQRAPYLS---SRLQGTQSYMPLIVSPSQGIVPAPGWNTYMGNIGPLSPTSIAGSNLIYSSRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAGYPIN 541
            S  PS G  YA  +   SL  A Y +    ++  +Q+YMP +V+PSQG++P  GW TYM             SN IY+ + Q D  + A + +   S  +     ++ +CR++MNTGTCKYG DCK+ HPKER+ QS  + + P+ LP+RPGQ  C N+  YG CKFG  C+FDH     P N
Sbjct:  171 SSFPSVGFPYASGMTMVSLPPATYGAIPRPQVPQSQAYMPYMVAPSQGLLPPQGWATYM-----------TASNPIYNMKTQLDSSSSASVAVTVTSHHH--SFSERAECRFFMNTGTCKYGDDCKYSHPKERLLQSPPTLLNPIVLPARPGQPACGNFKAYGFCKFGANCKFDHSMLLNPYN 340

HSP 2 Score: 80.8777 bits (198), Expect = 7.259e-15
Identity = 39/82 (47.56%), Postives = 47/82 (57.32%), Query Frame = 2

Query:  293 LPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGP-----LGLPSRPGQAICSNYSMYGICKFGPTCRFDHPY 523
            LPER  QPDC     TG CKYG  CK+HHPK+R      +  GP     LGLP R G+  C  Y   G+C+FG  C+F HP+
Sbjct:   85 LPERVGQPDCE----TGACKYGPTCKYHHPKDR------NGAGPVLFNVLGLPMRQGEKPCPYYMQTGLCRFGVACKFHHPH 156

HSP 3 Score: 68.1662 bits (165), Expect = 4.869e-11
Identity = 30/79 (37.97%), Postives = 43/79 (54.43%), Query Frame = 2

Query:  284 SQNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHP 520
            S   P+RP + DC++++ TG C YG  C+++HP   + Q          LP R GQ  C      G CK+GPTC++ HP
Sbjct:   38 SSPYPDRPGERDCQFFLRTGQCGYGNSCRYNHPLTNLPQGIIYYRDQ--LPERVGQPDCET----GACKYGPTCKYHHP 110

[Close]

BLAST of CX671401 vs. ExPASy Swiss-Prot
Match: C3H33_ARATH (Zinc finger CCCH domain-containing protein 33 OS=Arabidopsis thaliana GN=ZFN1 PE=1 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.246e-32
Identity = 78/191 (40.84%), Postives = 106/191 (55.50%), Query Frame = 2

Query:    5 VLPSSGLQYAGSLPTWSLQRAPYLSS-RLQGTQSYMPLIVSPSQGIVPAPGWNTYMGNIGPLSPTSIAGSNLIYSSRNQGDLGAGAQMHILSASSQN------------------LPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHP 520
            ++P+SG Q   S P WS  RA +++S R Q   SY  LI+   QG+VP  GWN Y G +G +SP+   G++  Y +  Q +          S S  N                   PERP QP+C++YM TG CK+G  CKFHHP++R A      +  +GLP RPG+ +C  Y+ YGICKFGP+C+FDHP
Sbjct:  165 MVPTSGQQ---SYP-WS--RASFIASPRWQDPSSYASLIMP--QGVVPVQGWNPYSGQLGSVSPSG-TGNDQNYRNLQQNETIESGSQSQGSFSGYNPGSSVPLGGYYALPRENVFPERPGQPECQFYMKTGDCKFGTVCKFHHPRDRQAPPPDCLLSSIGLPLRPGEPLCVFYTRYGICKFGPSCKFDHP 346

HSP 2 Score: 89.3521 bits (220), Expect = 2.041e-17
Identity = 35/75 (46.67%), Postives = 48/75 (64.00%), Query Frame = 2

Query:  296 PERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHP 520
            PER  QP+C YY+ TGTCK+G  CKFHHP+ +   +   ++  LG P R  +  C+ +   G CKFG TC+F+HP
Sbjct:   83 PERIGQPECEYYLKTGTCKFGVTCKFHHPRNKAGIAGRVSLNMLGYPLRSNEVDCAYFLRTGHCKFGGTCKFNHP 157

HSP 3 Score: 82.4185 bits (202), Expect = 2.495e-15
Identity = 35/75 (46.67%), Postives = 47/75 (62.67%), Query Frame = 2

Query:  296 PERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHP 520
            PERP +PDC YY+ TG C++G+ C+F+HP++R    A + +     P R GQ  C  Y   G CKFG TC+F HP
Sbjct:   38 PERPGEPDCSYYIRTGLCRFGSTCRFNHPRDRELVIATARMRG-EYPERIGQPECEYYLKTGTCKFGVTCKFHHP 111

[Close]

BLAST of CX671401 vs. ExPASy Swiss-Prot
Match: C3H32_ARATH (Zinc finger CCCH domain-containing protein 32 OS=Arabidopsis thaliana GN=At2g47850 PE=2 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 3.965e-29
Identity = 68/176 (38.64%), Postives = 97/176 (55.11%), Query Frame = 2

Query:   26 QYAGSLPTWSLQRAPYLSSRLQGTQSYMPLIVSPSQGIVPAPGWNTYMGNIGP-LSP--------TSIAGSNLIYSSRNQ--GDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHP 520
            QY G   +  + R     S +QG  +Y P++++P  G+VP PGW+ Y   + P LSP        TS+ G   + S+     G   + +    +    Q  PERP +P+C+YY+ TG CK+G  CKFHHP++R+   A   + P+GLP RPG   C+ Y   G CKFG TC+FDHP
Sbjct:  190 QYGGPSSSLRVARTLLPGSYMQG--AYGPMLLTP--GVVPIPGWSPYSAPVSPALSPGAQHAVGATSLYGVTQLTSTTPSLPGVYPSLSSPTGVIQKEQAFPERPGEPECQYYLKTGDCKFGTSCKFHHPRDRVPPRANCVLSPIGLPLRPGVQRCTFYVQNGFCKFGSTCKFDHP 361

HSP 2 Score: 85.5001 bits (210), Expect = 2.947e-16
Identity = 37/75 (49.33%), Postives = 45/75 (60.00%), Query Frame = 2

Query:  296 PERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHP 520
            PER  +P C++Y+ TGTCK+GA CKFHHPK      +   +   G P R G   CS Y   G CKFG TC+F HP
Sbjct:   88 PERFGEPPCQFYLKTGTCKFGASCKFHHPKNAGGSMSHVPLNIYGYPVREGDNECSYYLKTGQCKFGITCKFHHP 162

HSP 3 Score: 83.9593 bits (206), Expect = 8.575e-16
Identity = 40/94 (42.55%), Postives = 51/94 (54.26%), Query Frame = 2

Query:  242 DLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLG-LPSRPGQAICSNYSMYGICKFGPTCRFDHP 520
            D G    M  L   S + PERP  PDC YYM TG C YG  C+++HP++R   S  + +   G  P R G+  C  Y   G CKFG +C+F HP
Sbjct:   25 DTGLQESMWRLGLGSDSYPERPGAPDCAYYMRTGVCGYGNRCRYNHPRDR--ASVEATVRATGQYPERFGEPPCQFYLKTGTCKFGASCKFHHP 116

[Close]

BLAST of CX671401 vs. ExPASy Swiss-Prot
Match: C3H67_ARATH (Zinc finger CCCH domain-containing protein 67 OS=Arabidopsis thaliana GN=At5g63260 PE=2 SV=2)

HSP 1 Score: 127.487 bits (319), Expect = 6.763e-29
Identity = 62/149 (41.61%), Postives = 87/149 (58.39%), Query Frame = 2

Query:   92 GTQSYMPLIVSPSQGIVP-APGWNTYMGNIG------PLSPTSIAGSNLIYSSRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDH 517
            GT  ++P +   S+G+ P A  WN Y  +        PL+P+S   +N +  + +          H +S   +  PERPDQP+C YY+ TG CK+   CK+HHPK R+ + AA +    GLP RP Q++C++YS YGICKFGP CRFDH
Sbjct:  264 GTAPFIPSMFPHSRGVTPQASDWNGYQASSAYPPERSPLAPSSYQVNNSLAETSSFSQY-----QHQMSV--EEFPERPDQPECTYYLKTGDCKFKYKCKYHHPKNRLPKQAAFSFNDKGLPLRPDQSMCTHYSRYGICKFGPACRFDH 405

HSP 2 Score: 82.0333 bits (201), Expect = 3.259e-15
Identity = 34/74 (45.95%), Postives = 44/74 (59.46%), Query Frame = 2

Query:  299 ERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHP 520
            E P   +C+YY  TG CKYG  C+F H KE  + ++   +  LGLP RPG+  C  Y   G CKFG  C+F+HP
Sbjct:  147 ENPKLMECKYYFRTGGCKYGESCRFSHMKEHNSPASVPELNFLGLPIRPGEKECPFYMRNGSCKFGSDCKFNHP 220

[Close]

BLAST of CX671401 vs. ExPASy Swiss-Prot
Match: C3H43_ARATH (Zinc finger CCCH domain-containing protein 43 OS=Arabidopsis thaliana GN=At3g48440 PE=1 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.507e-28
Identity = 65/169 (38.46%), Postives = 94/169 (55.62%), Query Frame = 2

Query:   29 YAGSLPTWSLQRAPYLSSRLQGTQSYMPLIVSPSQGIVPA-PGWNTYMGNI-----GPLSPTSIAGSNLIYSSRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDH 517
            +  S  +WS  R       + GT  ++P+++S + G+    P WN Y  ++     G  SP++   + L+ +S  +  +      H + A  +  PERPDQP+C YYM TG CK+  +CK+HHPK R+ +     +   GLP RP Q IC+ YS YGICKFGP CRFDH
Sbjct:  260 FQASSTSWSSPR------HVNGTSPFIPVMLSQTHGVTSQNPEWNGYQASVYSSERGVFSPST---TYLMNNSSAETSMLLSQYRHQMPA--EEFPERPDQPECSYYMKTGDCKFKFNCKYHHPKNRLPKLPPYALNDKGLPLRPDQNICTYYSRYGICKFGPACRFDH 417

HSP 2 Score: 77.7962 bits (190), Expect = 6.145e-14
Identity = 31/68 (45.59%), Postives = 42/68 (61.76%), Query Frame = 2

Query:  317 DCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHP 520
            DC+YY  TG CKYG  C+F+H   +   ++A  +  LGLP RPG+  C  Y   G CK+G  C+F+HP
Sbjct:  163 DCKYYFRTGGCKYGETCRFNHTIPKSGLASAPELNFLGLPLRPGEVECPYYMRNGSCKYGAECKFNHP 230

HSP 3 Score: 69.707 bits (169), Expect = 1.674e-11
Identity = 38/87 (43.68%), Postives = 47/87 (54.02%), Query Frame = 2

Query:  284 SQNL-PERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNI--------GPLGLPSRPGQAICSNYSMYGICKFGPTCRFDH 517
            S+N+ P RP   DC +YM TG+CK+G+ CKF+HP  R  Q A  N         G LGL        C  Y   G CK+G TCRF+H
Sbjct:  103 SENVYPVRPGAEDCSFYMRTGSCKFGSSCKFNHPLARKFQIARDNKVREKEDDGGKLGLID------CKYYFRTGGCKYGETCRFNH 183

The following BLAST results are available for this feature:

BLAST of CX671401 vs. ExPASy Swiss-Prot

BLAST of CX671401 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21


Match Name	E-value	Identity	Description
C3H3_ARATH	5.520e-39	46.37	Zinc finger CCCH domain-containing protein 3 OS=Ar...	[more]
ZFNL_PEA	1.041e-37	43.55	Zinc finger CCCH domain-containing protein ZFN-lik...	[more]
C3H12_ORYSJ	1.503e-36	39.90	Zinc finger CCCH domain-containing protein 12 OS=O...	[more]
C3H63_ORYSJ	3.349e-36	39.11	Zinc finger CCCH domain-containing protein 63 OS=O...	[more]
C3H66_ORYSJ	1.272e-35	41.94	Zinc finger CCCH domain-containing protein 66 OS=O...	[more]
C3H26_ARATH	6.315e-35	40.98	Zinc finger CCCH domain-containing protein 26 OS=A...	[more]
C3H33_ARATH	2.246e-32	40.84	Zinc finger CCCH domain-containing protein 33 OS=A...	[more]
C3H32_ARATH	3.965e-29	38.64	Zinc finger CCCH domain-containing protein 32 OS=A...	[more]
C3H67_ARATH	6.763e-29	41.61	Zinc finger CCCH domain-containing protein 67 OS=A...	[more]
C3H43_ARATH	1.507e-28	38.46	Zinc finger CCCH domain-containing protein 43 OS=A...	[more]

Pages

Properties


Property Name	Value
Genbank description	UCRCS10_10H02_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-10H02-O4-5.g, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX671401 ID=CX671401; Name=CX671401; organism=Citrus sinensis; type=EST; length=696bp
ATCAGTTTTGCCTTCATCAGGTCTTCAGTATGCAGGTAGCCTTCCAACAT
GGTCATTACAAAGGGCCCCTTATTTATCTTCACGTTTACAAGGAACGCAA
AGCTATATGCCTCTCATTGTCTCTCCTTCTCAAGGCATTGTACCTGCACC
AGGCTGGAACACTTACATGGGAAACATCGGGCCTTTATCTCCAACAAGTA
TTGCTGGATCCAATCTCATTTACAGTTCTAGGAATCAAGGTGACTTAGGC
GCTGGCGCGCAGATGCACATATTGTCAGCATCAAGTCAAAATTTACCTGA
GAGACCTGATCAACCAGATTGCCGATATTATATGAACACTGGAACCTGCA
AATACGGAGCTGATTGCAAGTTCCACCACCCAAAGGAAAGGATTGCTCAA
TCAGCAGCAAGTAATATAGGCCCACTTGGCCTTCCCTCAAGACCTGGGCA
AGCTATATGTTCAAATTACAGTATGTATGGAATCTGCAAGTTCGGCCCAA
CTTGTAGATTTGATCATCCATATGCAGGATATCCTATTAACTACGGTTTG
AGCCTTCCACCGCTATCTATACTGGATTCTTCTCTCATGAATCATCAAGC
CATATCAGCAACTCATTCAATTGAGACTTCTCCTGATGCGTCATCAAAAA
TTCCCAACTGGGTACAGAATTCTGATGCTGTGAGCGTGCAGCATCA