CX671400
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX671400 vs. ExPASy Swiss-Prot
Match: C3H63_ORYSJ (Zinc finger CCCH domain-containing protein 63 OS=Oryza sativa subsp. japonica GN=Os11g0472000 PE=2 SV=2) HSP 1 Score: 83.5741 bits (205), Expect = 1.276e-15 Identity = 47/108 (43.52%), Postives = 57/108 (52.78%), Query Frame = -3 Query: 425 CKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAGYPINYGXXXXXXXXXXXXLMNHQAISATHSIETSPDASSKIPNWVQNSDAVSV 748 CKFHHPKERI + + LGLP RPG+ IC+ YS YGICKFGP C+FDHP + YG M A HS E SPD S + +SD+ + Sbjct: 330 CKFHHPKERIIPTPNCALSSLGLPLRPGEPICTFYSRYGICKFGPNCKFDHPMG--TVMYGLATSPTGDVSARRM--LAPVPAHS-EVSPDNVSGRSRRITHSDSQQI 432
BLAST of CX671400 vs. ExPASy Swiss-Prot
Match: C3H66_ORYSJ (Zinc finger CCCH domain-containing protein 66 OS=Oryza sativa subsp. japonica GN=Os12g0405100 PE=2 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 3.712e-15 Identity = 32/52 (61.54%), Postives = 39/52 (75.00%), Query Frame = -3 Query: 593 CKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHP 748 CKFHHPKER+ + + LGLP RPG+ +C+ YS YGICKFGP C+FDHP Sbjct: 339 CKFHHPKERLVPAPNCALNSLGLPLRPGEPVCTFYSRYGICKFGPNCKFDHP 390
BLAST of CX671400 vs. ExPASy Swiss-Prot
Match: C3H3_ARATH (Zinc finger CCCH domain-containing protein 3 OS=Arabidopsis thaliana GN=At1g04990 PE=2 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 4.848e-15 Identity = 49/131 (37.40%), Postives = 62/131 (47.33%), Query Frame = -3 Query: 356 CKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAGYPINYGXXXXXXXXXXXXLMNHQAISATHSIETSPDASSKIPNWVQNSDAVSVQHQNPDMKNSTTKNSDDSSKVDH 748 CK+ HP RI+Q S I P LP+RPGQ C N+ YG CKFGP C+FDHP YP + HQ IS T PN SD+ S+ + PD+K K S ++ K D+ Sbjct: 282 CKYSHPGVRISQPPPSLINPFVLPARPGQPACGNFRSYGFCKFGPNCKFDHPMLPYP-GLTMATSLPTPFASPVTTHQRISPT-------------PN---RSDSKSLSNGKPDVK----KESSETEKPDN 391
BLAST of CX671400 vs. ExPASy Swiss-Prot
Match: C3H67_ARATH (Zinc finger CCCH domain-containing protein 67 OS=Arabidopsis thaliana GN=At5g63260 PE=2 SV=2) HSP 1 Score: 79.337 bits (194), Expect = 2.406e-14 Identity = 31/51 (60.78%), Postives = 39/51 (76.47%), Query Frame = -3 Query: 596 CKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDH 748 CK+HHPK R+ + AA + GLP RP Q++C++YS YGICKFGP CRFDH Sbjct: 355 CKYHHPKNRLPKQAAFSFNDKGLPLRPDQSMCTHYSRYGICKFGPACRFDH 405
BLAST of CX671400 vs. ExPASy Swiss-Prot
Match: ZFNL_PEA (Zinc finger CCCH domain-containing protein ZFN-like OS=Pisum sativum PE=2 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 3.143e-14 Identity = 31/59 (52.54%), Postives = 41/59 (69.49%), Query Frame = -3 Query: 572 CKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAGYPIN 748 C+FHHP+ER + + P+GLP RPG+ +C YS YGICKFGP+C+FDHP + N Sbjct: 299 CRFHHPRERQIPAPDCVLSPIGLPLRPGEPLCVFYSRYGICKFGPSCKFDHPMGIFTYN 357
BLAST of CX671400 vs. ExPASy Swiss-Prot
Match: C3H57_ARATH (Zinc finger CCCH domain-containing protein 57 OS=Arabidopsis thaliana GN=ZFN3 PE=2 SV=2) HSP 1 Score: 75.0998 bits (183), Expect = 4.538e-13 Identity = 30/59 (50.85%), Postives = 39/59 (66.10%), Query Frame = -3 Query: 572 CKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAGYPIN 748 CKFHHP++R + +GLP RPG+ +C YS YGICKFGP+C+FDHP + N Sbjct: 264 CKFHHPRDRQTPPPDCVLSSVGLPLRPGEPLCVFYSRYGICKFGPSCKFDHPMRVFTYN 322
BLAST of CX671400 vs. ExPASy Swiss-Prot
Match: C3H33_ARATH (Zinc finger CCCH domain-containing protein 33 OS=Arabidopsis thaliana GN=ZFN1 PE=1 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 4.538e-13 Identity = 29/52 (55.77%), Postives = 38/52 (73.08%), Query Frame = -3 Query: 593 CKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHP 748 CKFHHP++R A + +GLP RPG+ +C Y+ YGICKFGP+C+FDHP Sbjct: 295 CKFHHPRDRQAPPPDCLLSSIGLPLRPGEPLCVFYTRYGICKFGPSCKFDHP 346
BLAST of CX671400 vs. ExPASy Swiss-Prot
Match: C3H26_ARATH (Zinc finger CCCH domain-containing protein 26 OS=Arabidopsis thaliana GN=ZFN2 PE=2 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 5.927e-13 Identity = 30/59 (50.85%), Postives = 38/59 (64.41%), Query Frame = -3 Query: 572 CKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAGYPIN 748 CK+ HPKER+ QS + + P+ LP+RPGQ C N+ YG CKFG C+FDH P N Sbjct: 282 CKYSHPKERLLQSPPTLLNPIVLPARPGQPACGNFKAYGFCKFGANCKFDHSMLLNPYN 340
BLAST of CX671400 vs. ExPASy Swiss-Prot
Match: C3H12_ORYSJ (Zinc finger CCCH domain-containing protein 12 OS=Oryza sativa subsp. japonica GN=Os01g0917400 PE=2 SV=2) HSP 1 Score: 74.7146 bits (182), Expect = 5.927e-13 Identity = 30/58 (51.72%), Postives = 38/58 (65.52%), Query Frame = -3 Query: 575 CKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAGYPI 748 CKFHHP+ R + + P+GLP RPG+ +C YS YGICKFG C+FDHP P+ Sbjct: 353 CKFHHPRVRSMPTPDCVLSPVGLPLRPGEELCKFYSRYGICKFGANCKFDHPTMAPPM 410
BLAST of CX671400 vs. ExPASy Swiss-Prot
Match: C3H43_ARATH (Zinc finger CCCH domain-containing protein 43 OS=Arabidopsis thaliana GN=At3g48440 PE=1 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.724e-12 Identity = 30/51 (58.82%), Postives = 35/51 (68.63%), Query Frame = -3 Query: 596 CKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDH 748 CK+HHPK R+ + + GLP RP Q IC+ YS YGICKFGP CRFDH Sbjct: 367 CKYHHPKNRLPKLPPYALNDKGLPLRPDQNICTYYSRYGICKFGPACRFDH 417 The following BLAST results are available for this feature:
BLAST of CX671400 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 15
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Sequences
The
following sequences are available for this feature:
EST sequence >CX671400 ID=CX671400; Name=CX671400; organism=Citrus sinensis; type=EST; length=750bpback to top |