CX671400

Overview
NameCX671400
Unique NameCX671400
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length750
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5051 contig Csv1_Contig5051:363..1113. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX671400 vs. ExPASy Swiss-Prot
Match: C3H63_ORYSJ (Zinc finger CCCH domain-containing protein 63 OS=Oryza sativa subsp. japonica GN=Os11g0472000 PE=2 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.276e-15
Identity = 47/108 (43.52%), Postives = 57/108 (52.78%), Query Frame = -3
Query:  425 CKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAGYPINYGXXXXXXXXXXXXLMNHQAISATHSIETSPDASSKIPNWVQNSDAVSV 748
            CKFHHPKERI  +    +  LGLP RPG+ IC+ YS YGICKFGP C+FDHP     + YG             M   A    HS E SPD  S     + +SD+  +
Sbjct:  330 CKFHHPKERIIPTPNCALSSLGLPLRPGEPICTFYSRYGICKFGPNCKFDHPMG--TVMYGLATSPTGDVSARRM--LAPVPAHS-EVSPDNVSGRSRRITHSDSQQI 432          
BLAST of CX671400 vs. ExPASy Swiss-Prot
Match: C3H66_ORYSJ (Zinc finger CCCH domain-containing protein 66 OS=Oryza sativa subsp. japonica GN=Os12g0405100 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.712e-15
Identity = 32/52 (61.54%), Postives = 39/52 (75.00%), Query Frame = -3
Query:  593 CKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHP 748
            CKFHHPKER+  +    +  LGLP RPG+ +C+ YS YGICKFGP C+FDHP
Sbjct:  339 CKFHHPKERLVPAPNCALNSLGLPLRPGEPVCTFYSRYGICKFGPNCKFDHP 390          
BLAST of CX671400 vs. ExPASy Swiss-Prot
Match: C3H3_ARATH (Zinc finger CCCH domain-containing protein 3 OS=Arabidopsis thaliana GN=At1g04990 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.848e-15
Identity = 49/131 (37.40%), Postives = 62/131 (47.33%), Query Frame = -3
Query:  356 CKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAGYPINYGXXXXXXXXXXXXLMNHQAISATHSIETSPDASSKIPNWVQNSDAVSVQHQNPDMKNSTTKNSDDSSKVDH 748
            CK+ HP  RI+Q   S I P  LP+RPGQ  C N+  YG CKFGP C+FDHP   YP                +  HQ IS T             PN    SD+ S+ +  PD+K    K S ++ K D+
Sbjct:  282 CKYSHPGVRISQPPPSLINPFVLPARPGQPACGNFRSYGFCKFGPNCKFDHPMLPYP-GLTMATSLPTPFASPVTTHQRISPT-------------PN---RSDSKSLSNGKPDVK----KESSETEKPDN 391          
BLAST of CX671400 vs. ExPASy Swiss-Prot
Match: C3H67_ARATH (Zinc finger CCCH domain-containing protein 67 OS=Arabidopsis thaliana GN=At5g63260 PE=2 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.406e-14
Identity = 31/51 (60.78%), Postives = 39/51 (76.47%), Query Frame = -3
Query:  596 CKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDH 748
            CK+HHPK R+ + AA +    GLP RP Q++C++YS YGICKFGP CRFDH
Sbjct:  355 CKYHHPKNRLPKQAAFSFNDKGLPLRPDQSMCTHYSRYGICKFGPACRFDH 405          
BLAST of CX671400 vs. ExPASy Swiss-Prot
Match: ZFNL_PEA (Zinc finger CCCH domain-containing protein ZFN-like OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.143e-14
Identity = 31/59 (52.54%), Postives = 41/59 (69.49%), Query Frame = -3
Query:  572 CKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAGYPIN 748
            C+FHHP+ER   +    + P+GLP RPG+ +C  YS YGICKFGP+C+FDHP   +  N
Sbjct:  299 CRFHHPRERQIPAPDCVLSPIGLPLRPGEPLCVFYSRYGICKFGPSCKFDHPMGIFTYN 357          
BLAST of CX671400 vs. ExPASy Swiss-Prot
Match: C3H57_ARATH (Zinc finger CCCH domain-containing protein 57 OS=Arabidopsis thaliana GN=ZFN3 PE=2 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 4.538e-13
Identity = 30/59 (50.85%), Postives = 39/59 (66.10%), Query Frame = -3
Query:  572 CKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAGYPIN 748
            CKFHHP++R        +  +GLP RPG+ +C  YS YGICKFGP+C+FDHP   +  N
Sbjct:  264 CKFHHPRDRQTPPPDCVLSSVGLPLRPGEPLCVFYSRYGICKFGPSCKFDHPMRVFTYN 322          
BLAST of CX671400 vs. ExPASy Swiss-Prot
Match: C3H33_ARATH (Zinc finger CCCH domain-containing protein 33 OS=Arabidopsis thaliana GN=ZFN1 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.538e-13
Identity = 29/52 (55.77%), Postives = 38/52 (73.08%), Query Frame = -3
Query:  593 CKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHP 748
            CKFHHP++R A      +  +GLP RPG+ +C  Y+ YGICKFGP+C+FDHP
Sbjct:  295 CKFHHPRDRQAPPPDCLLSSIGLPLRPGEPLCVFYTRYGICKFGPSCKFDHP 346          
BLAST of CX671400 vs. ExPASy Swiss-Prot
Match: C3H26_ARATH (Zinc finger CCCH domain-containing protein 26 OS=Arabidopsis thaliana GN=ZFN2 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.927e-13
Identity = 30/59 (50.85%), Postives = 38/59 (64.41%), Query Frame = -3
Query:  572 CKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAGYPIN 748
            CK+ HPKER+ QS  + + P+ LP+RPGQ  C N+  YG CKFG  C+FDH     P N
Sbjct:  282 CKYSHPKERLLQSPPTLLNPIVLPARPGQPACGNFKAYGFCKFGANCKFDHSMLLNPYN 340          
BLAST of CX671400 vs. ExPASy Swiss-Prot
Match: C3H12_ORYSJ (Zinc finger CCCH domain-containing protein 12 OS=Oryza sativa subsp. japonica GN=Os01g0917400 PE=2 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 5.927e-13
Identity = 30/58 (51.72%), Postives = 38/58 (65.52%), Query Frame = -3
Query:  575 CKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAGYPI 748
            CKFHHP+ R   +    + P+GLP RPG+ +C  YS YGICKFG  C+FDHP    P+
Sbjct:  353 CKFHHPRVRSMPTPDCVLSPVGLPLRPGEELCKFYSRYGICKFGANCKFDHPTMAPPM 410          
BLAST of CX671400 vs. ExPASy Swiss-Prot
Match: C3H43_ARATH (Zinc finger CCCH domain-containing protein 43 OS=Arabidopsis thaliana GN=At3g48440 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.724e-12
Identity = 30/51 (58.82%), Postives = 35/51 (68.63%), Query Frame = -3
Query:  596 CKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDH 748
            CK+HHPK R+ +     +   GLP RP Q IC+ YS YGICKFGP CRFDH
Sbjct:  367 CKYHHPKNRLPKLPPYALNDKGLPLRPDQNICTYYSRYGICKFGPACRFDH 417          
The following BLAST results are available for this feature:
BLAST of CX671400 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
C3H63_ORYSJ1.276e-1543.52Zinc finger CCCH domain-containing protein 63 OS=O... [more]
C3H66_ORYSJ3.712e-1561.54Zinc finger CCCH domain-containing protein 66 OS=O... [more]
C3H3_ARATH4.848e-1537.40Zinc finger CCCH domain-containing protein 3 OS=Ar... [more]
C3H67_ARATH2.406e-1460.78Zinc finger CCCH domain-containing protein 67 OS=A... [more]
ZFNL_PEA3.143e-1452.54Zinc finger CCCH domain-containing protein ZFN-lik... [more]
C3H57_ARATH4.538e-1350.85Zinc finger CCCH domain-containing protein 57 OS=A... [more]
C3H33_ARATH4.538e-1355.77Zinc finger CCCH domain-containing protein 33 OS=A... [more]
C3H26_ARATH5.927e-1350.85Zinc finger CCCH domain-containing protein 26 OS=A... [more]
C3H12_ORYSJ5.927e-1351.72Zinc finger CCCH domain-containing protein 12 OS=O... [more]
C3H43_ARATH1.724e-1258.82Zinc finger CCCH domain-containing protein 43 OS=A... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_10H02_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-10H02-O4-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671400 ID=CX671400; Name=CX671400; organism=Citrus sinensis; type=EST; length=750bp
GACAAGCAAAATGGGGTATTATCATCCAAAGAAGAGGAAATAGTTCAACA
GTAAAAATGGAATCGTTTACATCTCTTCACCTGCATTTTATTTATTCACC
ACAAAAAATGCCTTCCATGCCCCCCCGCAAGCTAAGCTTTTGCTCCCTCA
TAATCTCCAAACAACCTACACCATTCTCCCGGCAGAAACACAGGTGAAAA
AAAGAAAAGAAATAAATGGGGGGTGGGAGGTACAAGTCTTAAAATCTCCT
TCGAAGTACCGAGTGACAAAAATCAAAGAGAACAACCAAAAATGTAATAA
TTTAGTTTGACTGATCGTGTGGAGGTTCTGAACAATTTGGCACGGAGTGA
GGAGGATGATCGACTTTGGAAGAATCATCTGAATTCTTTGTAGTTGAGTT
CTTCATATCTGGGTTCTGATGCTGCACGCTCACAGCATCAGAATTCTGTA
CCCAGTTGGGAATTTTTGATGACGCATCAGGAGAAGTCTCAATTGAATGA
GTTGCTGATATGGCTTGATGATTCATGAGAGAAGAATCCAGTATAGATAG
CGGTGGAAGGCTCAAACCGTAGTTAATAGGATATCCTGCATATGGATGAT
CAAATCTACAAGTTGGGCCGAACTTGCAGATTCCATACATACTGTAATTT
GAACATATAGCTTGCCCAGGTCTTGAGGGAAGGCCAAGTGGGCCTATATT
ACTTGCTGCTGATTGAGCAATCCTTTCCTTTGGGTGGTGGAACTTGCAAT
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