CX671397

Overview
NameCX671397
Unique NameCX671397
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length830
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2234 contig Csv1_Contig2234:60..889. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX671397 vs. ExPASy Swiss-Prot
Match: RAVL1_ARATH (AP2/ERF and B3 domain-containing transcription repressor TEM1 OS=Arabidopsis thaliana GN=TEM1 PE=1 SV=1)

HSP 1 Score: 316.62 bits (810), Expect = 1.063e-85
Identity = 166/237 (70.04%), Postives = 188/237 (79.32%), Query Frame = 1
Query:  145 LCRVGSGASSVILDSEAGVEAESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEEEAAKAYDIAAQRFRGRDAVTNFKQMSCAGTSSDEGDIEMAFLSSHSKSEIVDMLRKHTYNDELEQSKRNYGLDANGKRVIKHGEGDGVATA-FGSDRVLKARDQLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQSGST--------SKGLLLNFEDVTGKVWRFRYSYWNSSQS 828
            L R+GSG SSV+LDSE GVE ESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEEEAA +YDIA +RFRGRDAVTNFK      +  D  D E AFL +HSK+EIVDMLRKHTY DE EQS+R + ++ +GKR        G+ TA +G+D VL+AR+ LFEK VTPSDVGKLNRLVIPKQHAEKHFPL + +T        +KG+L+N ED TGKVWRFRYSYWNSSQS
Sbjct:   42 LYRMGSGGSSVVLDSENGVETESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEEEAASSYDIAVRRFRGRDAVTNFK------SQVDGNDAESAFLDAHSKAEIVDMLRKHTYADEFEQSRRKF-VNGDGKR-------SGLETATYGNDAVLRAREVLFEKTVTPSDVGKLNRLVIPKQHAEKHFPLPAMTTAMGMNPSPTKGVLINLEDRTGKVWRFRYSYWNSSQS 264          
BLAST of CX671397 vs. ExPASy Swiss-Prot
Match: RAV2_ARATH (AP2/ERF and B3 domain-containing transcription repressor RAV2 OS=Arabidopsis thaliana GN=RAV2 PE=2 SV=1)

HSP 1 Score: 312.383 bits (799), Expect = 2.006e-84
Identity = 165/233 (70.82%), Postives = 188/233 (80.69%), Query Frame = 1
Query:  145 LCRVGSGASSVILDSEAGVEAESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEEEAAKAYDIAAQRFRGRDAVTNFKQMSCAGTSSDEGDIEMAFLSSHSKSEIVDMLRKHTYNDELEQSKRN---YGLDANGKRVIKHGEGDGVATAFGSDRVLKARDQLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQSGS--TSKGLLLNFEDVTGKVWRFRYSYWNSSQS 828
            L R+GSG SSV+LD E G+E ESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNE+EEAA++YDIAA RFRGRDAV NFK +       ++GD  +AFL +HSK+EIVDMLRKHTY DELEQ+ +      +DANGKR       +G +T   +D+VLK R+ LFEKAVTPSDVGKLNRLVIPKQHAEKHFPL S S   +KG+L+NFEDV GKVWRFRYSYWNSSQS
Sbjct:   35 LYRMGSGGSSVVLDPENGLETESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEQEEAARSYDIAACRFRGRDAVVNFKNV------LEDGD--LAFLEAHSKAEIVDMLRKHTYADELEQNNKRQLFLSVDANGKR-------NGSSTT-QNDKVLKTREVLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLPSPSPAVTKGVLINFEDVNGKVWRFRYSYWNSSQS 251          
BLAST of CX671397 vs. ExPASy Swiss-Prot
Match: RAV1_ARATH (AP2/ERF and B3 domain-containing transcription factor RAV1 OS=Arabidopsis thaliana GN=RAV1 PE=1 SV=1)

HSP 1 Score: 306.99 bits (785), Expect = 8.426e-83
Identity = 164/231 (71.00%), Postives = 183/231 (79.22%), Query Frame = 1
Query:  145 LCRVGSGASSVILDSEAGVEAESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEEEAAKAYDIAAQRFRGRDAVTNFKQMSCAGTSSDEGDIEMAFLSSHSKSEIVDMLRKHTYNDELEQSKRNYGLDANGKRVIKHG--EGDGVATAFGSDRVLKARDQLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQSGSTS-KGLLLNFEDVTGKVWRFRYSYWNSSQS 828
            L R+GSG SSV+LDSE GVEAESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEE+EAA+AYD+A  RFR RDAVTNFK +       DE +++  FL+SHSKSEIVDMLRKHTYN+ELEQSKR    + N  R +       DGV+T        ++ + LFEKAVTPSDVGKLNRLVIPK HAEKHFPL S + S KG+LLNFEDV GKVWRFRYSYWNSSQS
Sbjct:   33 LYRMGSG-SSVVLDSENGVEAESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEDEAARAYDVAVHRFRRRDAVTNFKDV-----KMDEDEVD--FLNSHSKSEIVDMLRKHTYNEELEQSKRRRNGNGNMTRTLLTSGLSNDGVSTT-----GFRSAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYWNSSQS 250          
BLAST of CX671397 vs. ExPASy Swiss-Prot
Match: RAVL4_ARATH (AP2/ERF and B3 domain-containing transcription factor ARF14 OS=Arabidopsis thaliana GN=ARF14 PE=2 SV=1)

HSP 1 Score: 289.271 bits (739), Expect = 1.818e-77
Identity = 160/236 (67.80%), Postives = 179/236 (75.85%), Query Frame = 1
Query:  145 LCRVGSGASSVILDSEAGVE----AESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEEEAAKAYDIAAQRFRGRDAVTNFKQMSCAGTSSDEGDIEMAFLSSHSKSEIVDMLRKHTYNDELEQSKRNYGLDANGKRVIKHGEGDGVA-TAFGSDRVLKARDQLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQSGSTS---KGLLLNFEDVTGKVWRFRYSYWNSSQS 828
            L R+GSG +SV+LDSE GVE    AESRKLPSS++KGVVPQPNGRWGAQIYEKHQRVWLGTFNEE+EAA+AYD+AA RFRGRDAVTNFK      T+ +E   E+ FL++HSKSEIVDMLRKHTY +EL+Q KRN   D NGK          V  T F      K  + LFEK VTPSDVGKLNRLVIPK  AEKHFPL  G+ +   KG+LLNFEDV GKVWRFRYSYWNSSQS
Sbjct:   29 LYRMGSG-TSVVLDSENGVEVEVEAESRKLPSSRFKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEDEAARAYDVAAHRFRGRDAVTNFKD-----TTFEE---EVEFLNAHSKSEIVDMLRKHTYKEELDQRKRN--RDGNGKETTAFALASMVVMTGF------KTAELLFEKTVTPSDVGKLNRLVIPKHQAEKHFPLPLGNNNVSVKGMLLNFEDVNGKVWRFRYSYWNSSQS 247          
BLAST of CX671397 vs. ExPASy Swiss-Prot
Match: Y1934_ORYSJ (AP2/ERF and B3 domain-containing protein Os01g0693400 OS=Oryza sativa subsp. japonica GN=Os01g0693400 PE=2 SV=1)

HSP 1 Score: 273.863 bits (699), Expect = 7.905e-73
Identity = 145/248 (58.47%), Postives = 174/248 (70.16%), Query Frame = 1
Query:  151 RVGSGASSVILDSEAGVEAESR------------------KLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEEEAAKAYDIAAQRFRGRDAVTNFKQMSCAGTSSDEGDIEMAFLSSHSKSEIVDMLRKHTYNDELEQSKRNYGLDANGKRVIKHGEGDG-VATAFGSDRVLKARDQLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQ---SGSTSKGLLLNFEDVTGKVWRFRYSYWNSSQS 828
            R+GSGAS+V+  +E G EA+S                   KLPSSK+KGVVPQPNGRWGAQIYE+HQRVWLGTF  E++AA+AYD+AAQRFRGRDAVTNF+ ++    +  +   E+ FL++ SK+E+VDMLRKHTY DEL QSKR +               +G +++         ARD LF+K VTPSDVGKLNRLVIPKQHAEKHFPLQ   +G  SKG+LLNFED  GKVWRFRYSYWNSSQS
Sbjct:   36 RMGSGASAVVDAAEPGAEADSGSGGRVCGGGGGGAGGAGGKLPSSKFKGVVPQPNGRWGAQIYERHQRVWLGTFAGEDDAARAYDVAAQRFRGRDAVTNFRPLA---EADPDAAAELRFLATRSKAEVVDMLRKHTYFDELAQSKRTFAASTPSAATTTASLSNGHLSSPRSPFAPAAARDHLFDKTVTPSDVGKLNRLVIPKQHAEKHFPLQLPSAGGESKGVLLNFEDAAGKVWRFRYSYWNSSQS 280          
BLAST of CX671397 vs. ExPASy Swiss-Prot
Match: Y5498_ORYSJ (AP2/ERF and B3 domain-containing protein Os05g0549800 OS=Oryza sativa subsp. japonica GN=Os05g0549800 PE=2 SV=1)

HSP 1 Score: 270.781 bits (691), Expect = 6.692e-72
Identity = 149/255 (58.43%), Postives = 174/255 (68.24%), Query Frame = 1
Query:  145 LCRVGSGASSVILDSEAGVEAESR---------KLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEEEAAKAYDIAAQRFRGRDAVTNFKQMSCAGTSSDEGDIEMAFLSSHSKSEIVDMLRKHTYNDELEQSKRNYGLDANGKRVIKHGEGDGVATAFGSDRVLKARDQLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQ------------------SGSTSKGLLLNFEDVTGKVWRFRYSYWNSSQS 828
            L RVGSGAS+V+  +E G EA+S          KLPSSKYKGVVPQPNGRWGAQIYE+HQRVWLGTF  E EAA+AYD+AAQRFRGRDAVTNF+ ++    S  E  +E+ FL+S SK+E+VDMLRKHTY +EL Q+KR +   A      KH      +++        AR+ LF+K VTPSDVGKLNRLVIPKQHAEKHFPLQ                   G   KG+LLNFED  GKVW+FRYSYWNSSQS
Sbjct:   30 LQRVGSGASAVMDAAEPGAEADSGGERRGGGGGKLPSSKYKGVVPQPNGRWGAQIYERHQRVWLGTFTGEAEAARAYDVAAQRFRGRDAVTNFRPLA---ESDPEAAVELRFLASRSKAEVVDMLRKHTYLEELTQNKRAFA--AISPPPPKHPASSPTSSS-------AAREHLFDKTVTPSDVGKLNRLVIPKQHAEKHFPLQLPPPTTTSSVAAAADAAAGGGDCKGVLLNFEDAAGKVWKFRYSYWNSSQS 272          
BLAST of CX671397 vs. ExPASy Swiss-Prot
Match: Y1410_ORYSJ (AP2/ERF and B3 domain-containing protein Os01g0141000 OS=Oryza sativa subsp. japonica GN=Os01g0141000 PE=2 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 1.952e-63
Identity = 132/230 (57.39%), Postives = 154/230 (66.96%), Query Frame = 1
Query:  166 ASSVILDSEAGVEAESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEEEAAKAYDIAAQRFRGRDAVTNFKQMSCAGTSSDEGDIEMAFLSSHSKSEIVDMLRKHTYNDELEQSKRNYGLDANGKRVIKHGEGDGVATAFGSDRVLKARDQLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQ---------SGSTSKGLLLNFEDVTGKVWRFRYSYWNSSQS 828
            A  V+    A   A+     SS+YKGVVPQPNGRWGAQIYE+H RVWLGTF +EE AA+AYD+AA R+RGRDA TNF   + +         E+AFL++HSK+EIVDMLRKHTY DEL Q              ++ G G G   A        AR+ LFEKAVTPSDVGKLNRLV+PKQHAEKHFPL+         + +T KG+LLNFED  GKVWRFRYSYWNSSQS
Sbjct:   50 ADEVVTSRPAAAAAQQ----SSRYKGVVPQPNGRWGAQIYERHARVWLGTFPDEEAAARAYDVAALRYRGRDAATNFPGAAASAA-------ELAFLAAHSKAEIVDMLRKHTYADELRQG-------------LRRGRGMG---ARAQPTPSWAREPLFEKAVTPSDVGKLNRLVVPKQHAEKHFPLRRAASSDSASAAATGKGVLLNFEDGEGKVWRFRYSYWNSSQS 252          
BLAST of CX671397 vs. ExPASy Swiss-Prot
Match: Y1407_ORYSJ (Putative AP2/ERF and B3 domain-containing protein Os01g0140700 OS=Oryza sativa subsp. japonica GN=Os01g0140700 PE=3 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 3.681e-62
Identity = 137/258 (53.10%), Postives = 158/258 (61.24%), Query Frame = 1
Query:  148 CRVGSGASSVILDSEAGVEAESRKL--------------------------PSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEEEAAKAYDIAAQRFRGRDAVTNFKQMSCAGTSSDEGDIEMAFLSSHSKSEIVDMLRKHTYNDELEQSKRNYGLDANGKRVIKHGEGDGVATAFGSDRVLKARDQLFEKAVTPSDVGKLNRLVIPKQHAEKHFPL-----QSGSTSKGLLLNFEDVTGKVWRFRYSYWNSSQS 828
            C  GSG SS   DS+   E E                              PSS+YKGVVPQPNGRWGAQIYE+H RVWLGTF +EE AA+AYD+AA RFRGRDAVTN +  +  G S+ E    +AFL++HSK+E+VDMLRKHTY+DEL+Q  R       G R                     AR+ LFEKAVTPSDVGKLNRLV+PKQ AE+HFP       S +  KG+LLNFED  GKVWRFRYSYWNSSQS
Sbjct:   12 CNSGSGGSSSTTDSKQEEEEEEELAAMEEDELIHVVQAAELRLPSSTTATRPSSRYKGVVPQPNGRWGAQIYERHARVWLGTFPDEEAAARAYDVAALRFRGRDAVTN-RAPAAEGASAGE----LAFLAAHSKAEVVDMLRKHTYDDELQQGLRR------GSRA--------------QPTPRWAREPLFEKAVTPSDVGKLNRLVVPKQQAERHFPFPLRRHSSDAAGKGVLLNFEDGDGKVWRFRYSYWNSSQS 244          
BLAST of CX671397 vs. ExPASy Swiss-Prot
Match: RAVL3_ARATH (AP2/ERF and B3 domain-containing transcription factor At1g51120 OS=Arabidopsis thaliana GN=At1g51120 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 3.145e-29
Identity = 84/212 (39.62%), Postives = 115/212 (54.25%), Query Frame = 1
Query:  226 SSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEEEAAKAYDIAAQRFRGRDAVTNFKQMSCAGTSSDEGDIEMAFLSSHSKSEIVDMLRKHTYNDEL---EQSKRNYGLDANGKRVIKHGEGDGVATAFGSDRVLKARDQLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQSG-----STSKG---LLLNFEDVTGKVWRFRYSYWNSSQS 828
            ++K+KGVV Q NG WGAQIY  H+R+WLGTF    EAA AYD A+ + R  DA  + +    +  +  E D +  + +    + I D   +H + D L    Q   N  +    K+V+  GEG   +    S        QLF+K +TPSDVGKLNRLVIPK++A K+ P  S       TS+G   + + F D   + W+FRY YW SSQS
Sbjct:   44 TTKFKGVVQQQNGHWGAQIYADHRRIWLGTFKSAHEAAAAYDSASIKLRSFDA-NSHRNFPWSDFTLHEPDFQECYTTEAVLNMIRDGSYQHKFRDFLRIRSQIVANINI-VGSKQVLGGGEGGQESNKCFS------CTQLFQKELTPSDVGKLNRLVIPKKYAVKYMPFISDDQSEKETSEGVEDVEVVFYDRAMRQWKFRYCYWRSSQS 247          
BLAST of CX671397 vs. ExPASy Swiss-Prot
Match: RAVL2_ARATH (AP2/ERF and B3 domain-containing transcription factor At1g50680 OS=Arabidopsis thaliana GN=At1g50680 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.662e-28
Identity = 81/211 (38.39%), Postives = 113/211 (53.55%), Query Frame = 1
Query:  232 KYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEEEAAKAYDIAAQRFRGRDAVTNFKQMSCAGTSSDEGDIEMAFLSSHSKSEIVDMLRKHTYNDELE-QSKRNYGLDANGKRVIKHGEGDGVATAFGSDRVLKARDQLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQSGSTS-----------KGLLLNFEDVTGKVWRFRYSYWNSSQS 828
            KYKGVV Q NG WGAQIY  H+R+WLGTF   +EAA AYD A+ + R  DA  + +    +  + +E D +  + +    + I D   +H + D L  +S+    ++  G    K   G+       SD+      QLF+K +TPSDVGKLNRLVIPK++A K+ P  S   S           + + + F D   + W+FRY YW SSQS
Sbjct:   27 KYKGVVQQQNGHWGAQIYADHKRIWLGTFKSADEAATAYDSASIKLRSFDA-NSHRNFPWSTITLNEPDFQNCYTTETVLNMIRDGSYQHKFRDFLRIRSQIVASINIGGP---KQARGE---VNQESDKCFSC-TQLFQKELTPSDVGKLNRLVIPKKYAVKYMPFISADQSEKEEGEIVGSVEDVEVVFYDRAMRQWKFRYCYWKSSQS 229          
The following BLAST results are available for this feature:
BLAST of CX671397 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
RAVL1_ARATH1.063e-8570.04AP2/ERF and B3 domain-containing transcription rep... [more]
RAV2_ARATH2.006e-8470.82AP2/ERF and B3 domain-containing transcription rep... [more]
RAV1_ARATH8.426e-8371.00AP2/ERF and B3 domain-containing transcription fac... [more]
RAVL4_ARATH1.818e-7767.80AP2/ERF and B3 domain-containing transcription fac... [more]
Y1934_ORYSJ7.905e-7358.47AP2/ERF and B3 domain-containing protein Os01g0693... [more]
Y5498_ORYSJ6.692e-7258.43AP2/ERF and B3 domain-containing protein Os05g0549... [more]
Y1410_ORYSJ1.952e-6357.39AP2/ERF and B3 domain-containing protein Os01g0141... [more]
Y1407_ORYSJ3.681e-6253.10Putative AP2/ERF and B3 domain-containing protein ... [more]
RAVL3_ARATH3.145e-2939.62AP2/ERF and B3 domain-containing transcription fac... [more]
RAVL2_ARATH2.662e-2838.39AP2/ERF and B3 domain-containing transcription fac... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_10G12_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-10G12-M24-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671397 ID=CX671397; Name=CX671397; organism=Citrus sinensis; type=EST; length=830bp
CTCTTGTAGACACACATAACACACATGAAAAGAGAAGAAATGGACGGAAG
TTGCATGGACGAAAGCACGACAACTGATTCAGCATCAACATCCCCGCCAA
TAACTTTCCCTCCGAGCATCCCGCCGACCAAGTCGCCGGAGAGTCTTTGC
CGAGTCGGCAGCGGAGCCTCCAGCGTGATTCTCGACTCGGAAGCCGGCGT
GGAGGCTGAGTCGAGGAAGCTCCCGTCTTCCAAATACAAAGGGGTGGTCC
CACAGCCGAATGGGAGGTGGGGCGCCCAGATATACGAGAAGCACCAAAGG
GTCTGGCTCGGCACCTTCAACGAGGAAGAGGAAGCTGCCAAGGCCTACGA
TATCGCTGCGCAGCGTTTCCGCGGACGCGATGCCGTCACAAACTTCAAGC
AAATGTCTTGTGCTGGAACGTCCTCCGACGAGGGTGATATCGAAATGGCG
TTCTTGAGCTCCCACTCCAAGTCCGAGATCGTCGATATGCTGAGGAAGCA
CACTTACAACGACGAGCTCGAGCAGAGCAAAAGAAACTACGGCCTCGATG
CCAACGGCAAGCGTGTAATCAAACACGGGGAAGGTGATGGTGTTGCCACT
GCCTTCGGTTCAGACCGGGTCCTTAAAGCGCGTGACCAGCTTTTTGAAAA
GGCCGTTACCCCAAGTGACGTGGGGAAGCTGAACCGGCTCGTGATACCCA
AGCAGCACGCGGAGAAGCACTTCCCTTTACAGAGCGGAAGCACTTCCAAG
GGACTGCTCTTGAACTTTGAGGATGTCACCGGCAAAGTTTGGAGGTTTAG
GTACTCCTACTGGAACAGCAGTCAAAGCTA
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