CX671393

Overview
NameCX671393
Unique NameCX671393
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length425
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig409 contig Csv1_Contig409:65..487. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX671393 vs. ExPASy Swiss-Prot
Match: QCR8_SOLTU (Cytochrome b-c1 complex subunit 8 OS=Solanum tuberosum PE=1 SV=2)

HSP 1 Score: 130.568 bits (327), Expect = 2.519e-30
Identity = 59/71 (83.10%), Postives = 66/71 (92.96%), Query Frame = 1 
Query:    1 GKQPVRMKAVVYALSPFQQKIMPGLWKDLTGKIHHKVSDNWISTILLLGPLVGTYAYVQNYQEKEKLAHRY 213
            GKQPV++KAVVYA+SPFQQKIMPGLWKDL GKIHHKVS+NWIS  LLLGPLVGTY+YVQ++ EKEKL HRY
Sbjct:    2 GKQPVKLKAVVYAISPFQQKIMPGLWKDLPGKIHHKVSENWISATLLLGPLVGTYSYVQHFLEKEKLEHRY 72
The following BLAST results are available for this feature:
BLAST of CX671393 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
QCR8_SOLTU2.519e-3083.10Cytochrome b-c1 complex subunit 8 OS=Solanum tuber... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS10_10G10_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-10G10-M20-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671393 ID=CX671393; Name=CX671393; organism=Citrus sinensis; type=EST; length=425bp
GGAAAGCAGCCGGTGAGAATGAAGGCGGTGGTGTACGCACTGTCGCCATT
TCAACAAAAGATTATGCCGGGGCTTTGGAAGGATCTGACCGGTAAGATCC
ATCACAAGGTCTCCGATAATTGGATCAGCACTATCCTTTTGCTCGGTCCT
CTCGTCGGCACCTATGCTTATGTCCAAAATTACCAGGAGAAGGAGAAGTT
GGCACACAGGTATTGAAGCAAGCTGATGTGCCTCTATTTTTTCAGAAGCT
TAAGGTTCTTGTGAATTAGCTACAACTCTTGTTGAAGTTGTGAAACATAA
TTGAAATTGCTATGTAGTTGAGACTACAGTAGTTTTGATTTGTGGGTTTT
GTTGATGGATTGAGAACTATTGTCAAAATTCTGAGCAATATTTTCTCTTT
CTTTTGATGAAAAAAAAAAAAAAAA
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