FC871755

Overview
NameFC871755
Unique NameFC871755
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length669
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2386 contig Csv1_Contig2386:228..895. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC871755 vs. ExPASy Swiss-Prot
Match: PABP2_ARATH (Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2 PE=1 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.589e-32
Identity = 66/84 (78.57%), Postives = 74/84 (88.10%), Query Frame = 2
Query:  410 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDP 661
            FG TSLYVGDL+ NVTDSQL+D F QMG VV+VRVCRDL TRRSLGYGYVNF+N Q+AARA++ LN+ PL GKPIRVMYSHRDP
Sbjct:   33 FGNTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQELNYIPLYGKPIRVMYSHRDP 116          
BLAST of FC871755 vs. ExPASy Swiss-Prot
Match: PABP_NEOFI (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=pab1 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.122e-23
Identity = 48/82 (58.54%), Postives = 65/82 (79.27%), Query Frame = 2
Query:  416 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDP 661
            + SLYVG+L+ +VT++ LY+LF+ +GQV S+RVCRD  TRRSLGY YVN++N  +  RALE LN+T + GKP R+M+S RDP
Sbjct:   51 SASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRIMWSQRDP 132          
BLAST of FC871755 vs. ExPASy Swiss-Prot
Match: PABP_ASPTN (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=pab1 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.122e-23
Identity = 48/82 (58.54%), Postives = 65/82 (79.27%), Query Frame = 2
Query:  416 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDP 661
            + SLYVG+L+ +VT++ LY+LF+ +GQV S+RVCRD  TRRSLGY YVN++N  +  RALE LN+T + GKP R+M+S RDP
Sbjct:   47 SASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRIMWSQRDP 128          
BLAST of FC871755 vs. ExPASy Swiss-Prot
Match: PABP_ASPOR (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus oryzae GN=pab1 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.122e-23
Identity = 48/82 (58.54%), Postives = 65/82 (79.27%), Query Frame = 2
Query:  416 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDP 661
            + SLYVG+L+ +VT++ LY+LF+ +GQV S+RVCRD  TRRSLGY YVN++N  +  RALE LN+T + GKP R+M+S RDP
Sbjct:   48 SASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRIMWSQRDP 129          
BLAST of FC871755 vs. ExPASy Swiss-Prot
Match: PABP_ASPNC (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=pab1 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.122e-23
Identity = 48/82 (58.54%), Postives = 65/82 (79.27%), Query Frame = 2
Query:  416 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDP 661
            + SLYVG+L+ +VT++ LY+LF+ +GQV S+RVCRD  TRRSLGY YVN++N  +  RALE LN+T + GKP R+M+S RDP
Sbjct:   53 SASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRIMWSQRDP 134          
BLAST of FC871755 vs. ExPASy Swiss-Prot
Match: PABP_ASPFU (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus fumigatus GN=pab1 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.122e-23
Identity = 48/82 (58.54%), Postives = 65/82 (79.27%), Query Frame = 2
Query:  416 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDP 661
            + SLYVG+L+ +VT++ LY+LF+ +GQV S+RVCRD  TRRSLGY YVN++N  +  RALE LN+T + GKP R+M+S RDP
Sbjct:   51 SASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRIMWSQRDP 132          
BLAST of FC871755 vs. ExPASy Swiss-Prot
Match: PABP_ASPCL (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus clavatus GN=pab1 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.122e-23
Identity = 48/82 (58.54%), Postives = 65/82 (79.27%), Query Frame = 2
Query:  416 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDP 661
            + SLYVG+L+ +VT++ LY+LF+ +GQV S+RVCRD  TRRSLGY YVN++N  +  RALE LN+T + GKP R+M+S RDP
Sbjct:   50 SASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRIMWSQRDP 131          
BLAST of FC871755 vs. ExPASy Swiss-Prot
Match: PABP_PHANO (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Phaeosphaeria nodorum GN=PAB1 PE=3 SV=3)

HSP 1 Score: 105.531 bits (262), Expect = 2.542e-22
Identity = 45/82 (54.88%), Postives = 67/82 (81.71%), Query Frame = 2
Query:  416 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDP 661
            + SLYVG+L+ +VT++ L++LF+ +GQV S+RVCRD  TRRSLGY YVN++++++  +ALE LN+T + GKP R+M+S RDP
Sbjct:   47 SASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKALEELNYTVIKGKPCRIMWSQRDP 128          
BLAST of FC871755 vs. ExPASy Swiss-Prot
Match: PABP_COCIM (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Coccidioides immitis GN=PAB1 PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.320e-22
Identity = 46/82 (56.10%), Postives = 65/82 (79.27%), Query Frame = 2
Query:  416 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDP 661
            + SLYVG+L+ +VT++ L++LF+ +GQV S+RVCRD  TRRSLGY YVN++N  +  RALE LN+T + G+P R+M+S RDP
Sbjct:   54 SASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGRPCRIMWSQRDP 135          
BLAST of FC871755 vs. ExPASy Swiss-Prot
Match: PABP_EMENI (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Emericella nidulans GN=pab1 PE=2 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 5.663e-22
Identity = 46/82 (56.10%), Postives = 64/82 (78.05%), Query Frame = 2
Query:  416 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDP 661
            + SLYVG+L+ +VT++ LY+LF+ +GQV S+RVCRD  TRRSLGY YVN+++     RAL+ LN+T + GKP R+M+S RDP
Sbjct:   41 SASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNDTAHGERALDELNYTLIKGKPCRIMWSQRDP 122          
The following BLAST results are available for this feature:
BLAST of FC871755 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
PABP2_ARATH1.589e-3278.57Polyadenylate-binding protein 2 OS=Arabidopsis tha... [more]
PABP_NEOFI5.122e-2358.54Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_ASPTN5.122e-2358.54Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_ASPOR5.122e-2358.54Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_ASPNC5.122e-2358.54Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_ASPFU5.122e-2358.54Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_ASPCL5.122e-2358.54Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_PHANO2.542e-2254.88Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_COCIM3.320e-2256.10Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_EMENI5.663e-2256.10Polyadenylate-binding protein, cytoplasmic and nuc... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK1CG07FM2 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK1CG07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871755 ID=FC871755; Name=FC871755; organism=Citrus sinensis; type=EST; length=669bp
TACATTTCCAAAAAATTGAAAAAAAAAAAACCGACCACCAACTAGTTTAC
CTATCTCTCACGCGCCGCCATCGTCGCCGGCGCCAACAATTCGATTATCC
TTCTTTCCGCTTCCCTCTCCTCCCCTTTCTCTATCCATCTGAGAGGCAAA
AACCAAAAAAAAAAAAAAAGAGGCTTTGAGTTGTTTTTAATTCCGTCTTT
TGTTTATTATTACTATCAATTTTAGGGTTTCTTTGGGTCCCGAAGAATAA
CAAGAGGAGAGGGAAGAAAAATCCCCATAAAAAGGAAAAAAAGAAAAAAG
GAAAAAATTTCGAGGGAAAAAAAAGGGATTTTTTCTTTCTGTATTTGAGA
TGGCTCAGGTTCAAGCTCAGGGGCAGAACGTGAACGGAGGTGGGGCCAAT
GCGAATCAATTCGGGACGACGTCGCTTTACGTCGGGGATCTGGAGGCGAA
CGTGACGGATTCGCAGCTGTACGATCTGTTTAATCAAATGGGTCAAGTGG
TTTCAGTTCGGGTTTGTAGGGACTTGTCGACCCGACGATCTCTCGGTTAC
GGCTACGTTAACTTCAGTAACGCACAGGAAGCTGCAAGGGCATTGGAGAT
GCTGAACTTCACACCTCTGAATGGAAAGCCCATTAGGGTTATGTATTCTC
ATCGTGACCCAGTCTTCGC
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