CX671373

Overview
NameCX671373
Unique NameCX671373
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length881
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6008 contig Csv1_Contig6008:195..1075. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX671373 vs. ExPASy Swiss-Prot
Match: RSBQ_BACSU (Sigma factor sigB regulation protein rsbQ OS=Bacillus subtilis GN=rsbQ PE=1 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 1.032e-41
Identity = 91/228 (39.91%), Postives = 137/228 (60.09%), Query Frame = -1 
Query:  201 DDYRVVLYDNMGAGTTNPDYFDFNRYSTLEGYAFDLLAILEELQIDSCILVGHSVSAMIGAIASISRPDLFTKLVMISGSPRYLND-VDYYGGFEQEELDQLFEAMRSNYKAWCSGFAPLAVGGDMDSVAVQEFSRTLFNMRPDIALSVAQTIFQSDMRQILSLVSVPCHIIQSMKDLAVPVVISEYLHQNLLADSVVEVMSSDGHLPQLSSPDIVIPVLLRHIRYNI 881
            +D+RV+L+D +G+G ++   +D NRY TL+GYA D+L + E L +   + VGHSV A+IG +ASI RP+LF+ LVM+  SP YLND  +YYGGFE+E+L  L E M  NY  W + FA   +         +E      +  P IA   A+  F SD R+ LS V+VP  I+Q   D+  P  + +Y+HQ+L   S+ + M + GH P +S PD  I ++  +++ ++
Sbjct:   43 EDHRVILFDYVGSGHSDLRAYDLNRYQTLDGYAQDVLDVCEALDLKETVFVGHSVGALIGMLASIRRPELFSHLVMVGPSPCYLNDPPEYYGGFEEEQLLGLLEMMEKNYIGWATVFAATVLNQPDRPEIKEELESRFCSTDPVIARQFAKAAFFSDHREDLSKVTVPSLILQCADDIIAPATVGKYMHQHLPYSSLKQ-MEARGHCPHMSHPDETIQLIGDYLKAHV 269
The following BLAST results are available for this feature:
BLAST of CX671373 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
RSBQ_BACSU1.032e-4139.91Sigma factor sigB regulation protein rsbQ OS=Bacil... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS10_10F11_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-10F11-K22-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671373 ID=CX671373; Name=CX671373; organism=Citrus sinensis; type=EST; length=881bp
TTTTTTTACATAACAAGAAGGATCAAATTTCAAACACCCAAATCAAGTTG
CAGCAGGAAGCCAAGTTACAAAGACACAGTACAGGCGACATTGAGCCCTA
GACACAACAATAAATGATAAACCGAACCAACCTTATTAACAAATACAAAG
TAAGAAAACCCCAGATGTCGTTAAACATAAACCCCTACATATCATGATGC
AATATTGTAGCGAATGTGCCTAAGAAGCACCGGAATAACAATATCCGGGG
AGCTCAGCTGCGGCAAATGACCGTCAGATGACATGACTTCAACAACGGAA
TCGGCGAGGAGATTCTGATGAAGATATTCGGAGATCACTACAGGCACGGC
CAAATCCTTCATGCTTTGTATTATGTGGCATGGGACACTGACAAGGCTGA
GAATTTGCCTCATGTCACTTTGGAAAATGGTTTGTGCCACACTCAAGGCT
ATGTCTGGTCTCATGTTGAATAAGGTTCGGCTAAATTCTTGAACAGCCAC
CGAGTCCATGTCCCCGCCGACAGCTAGCGGGGCGAATCCAGAGCACCATG
CCTTGTAATTTGACCTCATTGCTTCAAAAAGCTGATCCAGCTCCTCTTGC
TCAAATCCTCCGTAGTAATCCACATCATTGAGATACCTAGGAGAGCCGGA
GATCATGACGAGTTTAGTGAAGAGATCAGGGCGGGAGATGGAGGCGATGG
CGCCAATCATGGCGGAAACAGAGTGACCGACGAGAATACAAGAGTCAATT
TGCAGCTCTTCTAAAATAGCAAGCAAATCGAAGGCATAGCCTTCGAGGGT
GGAGTATCTGTTGAAGTCAAAGTAGTCGGGATTGGTGGTGCCAGCGCCCA
TGTTGTCATACAAAACGACGCGGTAATCGTC
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