EY650211

Overview
NameEY650211
Unique NameEY650211
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length771
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY650211 vs. ExPASy Swiss-Prot
Match: PSAN_ARATH (Photosystem I reaction center subunit N, chloroplastic OS=Arabidopsis thaliana GN=PSAN PE=1 SV=2)

HSP 1 Score: 202.986 bits (515), Expect = 1.511e-51
Identity = 109/170 (64.12%), Postives = 125/170 (73.53%), Query Frame = 1
Query:   79 NSSVLACNYAISGSAGSSELNAKIVSVSTPAVHGHK----MPVIRAQQVDVSKESRGTDGRRXXXXXXXXXXXXXXXXXXXXXXXGVIDEYLERSKANKELNDQKRLATSGANFARAYTVQFGTCKFPENFTGCQDLAKQKKVPFISDDLELECKGKDKYKCGSNVFWKW 576
            NSSVL C+YAI+GS GS ELN K+  V++    G K    MPVI+AQ+V V  +  G++GRR                       GVIDEYLERSK NKELND+KRLATSGANFARA+TVQFG+CKFPENFTGCQDLAKQKKVPFIS+D+ LEC+GKDKYKCGSNVFWKW
Sbjct:    5 NSSVLTCSYAIAGS-GSVELNQKVGLVNSSVGFGQKKQMIMPVIKAQRV-VGDDVDGSNGRRSAMVFLAATLFSTAAVSASANA-GVIDEYLERSKTNKELNDKKRLATSGANFARAFTVQFGSCKFPENFTGCQDLAKQKKVPFISEDIALECEGKDKYKCGSNVFWKW 171          
BLAST of EY650211 vs. ExPASy Swiss-Prot
Match: PSAN_MAIZE (Photosystem I reaction center subunit N, chloroplastic (Fragment) OS=Zea mays GN=PSAN PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 7.781e-40
Identity = 72/84 (85.71%), Postives = 82/84 (97.62%), Query Frame = 1
Query:  325 VIDEYLERSKANKELNDQKRLATSGANFARAYTVQFGTCKFPENFTGCQDLAKQKKVPFISDDLELECKGKDKYKCGSNVFWKW 576
            + DEYLE+SKANKELND+KRLATSGANFARAYTV+FG+C+FP NFTGCQDLAKQKKVPFISDDLE+EC+GK+K+KCGSNVFWKW
Sbjct:   29 IFDEYLEKSKANKELNDKKRLATSGANFARAYTVEFGSCQFPYNFTGCQDLAKQKKVPFISDDLEIECEGKEKFKCGSNVFWKW 112          
BLAST of EY650211 vs. ExPASy Swiss-Prot
Match: PSAN_HORVU (Photosystem I reaction center subunit N, chloroplastic OS=Hordeum vulgare GN=PSAN PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.957e-39
Identity = 72/84 (85.71%), Postives = 80/84 (95.24%), Query Frame = 1
Query:  325 VIDEYLERSKANKELNDQKRLATSGANFARAYTVQFGTCKFPENFTGCQDLAKQKKVPFISDDLELECKGKDKYKCGSNVFWKW 576
            V DEYLE+SK NKELND+KR ATSGANFARAYTVQFG+CKFP NFTGCQDLAKQKKVPFI+DDLE+EC+GK+K+KCGSNVFWKW
Sbjct:   62 VFDEYLEKSKLNKELNDKKRAATSGANFARAYTVQFGSCKFPYNFTGCQDLAKQKKVPFITDDLEIECEGKEKFKCGSNVFWKW 145          
BLAST of EY650211 vs. ExPASy Swiss-Prot
Match: PSAN_VOLCA (Photosystem I reaction center subunit N, chloroplastic OS=Volvox carteri GN=PSAN PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.802e-20
Identity = 46/79 (58.23%), Postives = 62/79 (78.48%), Query Frame = 1
Query:  322 GVIDEYLERSKANKELNDQKRLATSGANFARAYTVQFGTCKFPENFTGCQDLAKQKKVPFISDDLELECKGKDKYKCGS 558
            GV+++ L +S ANK LN++KRLATS AN AR+ TV  GTC+FPENF GC++LA  K V +I++DL++EC+GKD   CGS
Sbjct:   54 GVVEDLLAKSAANKALNNKKRLATSYANLARSRTVYDGTCQFPENFFGCEELAFNKGVKYIAEDLKIECEGKDAKSCGS 132          
The following BLAST results are available for this feature:
BLAST of EY650211 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
PSAN_ARATH1.511e-5164.12Photosystem I reaction center subunit N, chloropla... [more]
PSAN_MAIZE7.781e-4085.71Photosystem I reaction center subunit N, chloropla... [more]
PSAN_HORVU2.957e-3985.71Photosystem I reaction center subunit N, chloropla... [more]
PSAN_VOLCA1.802e-2058.23Photosystem I reaction center subunit N, chloropla... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-100-008-E05-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY650211 ID=EY650211; Name=EY650211; organism=Citrus sinensis; type=EST; length=771bp
CCATTTTGTTCTCAACTTCGTGAACTTTGTAAAACAAAAAAAAAAATTTG
CGCTGCAGCAGGAGCGATGGCAGCCATGAACTCTAGTGTACTCGCATGCA
ACTATGCCATTTCAGGCAGTGCTGGATCATCTGAGCTCAATGCAAAGATT
GTTTCGGTTTCAACCCCGGCTGTGCATGGCCACAAAATGCCTGTGATCAG
AGCTCAACAAGTTGATGTTTCAAAAGAATCAAGAGGAACTGATGGAAGGA
GAGCTGCCATGGCTCTTCTAGCAGTTACCCTTTTCACCACAGCTACTGCT
GCTGCTTCTTCTGCTAATGCTGGGGTCATCGATGAATACCTTGAGAGAAG
CAAAGCCAACAAGGAATTGAATGACCAGAAGAGATTGGCAACAAGTGGTG
CAAACTTTGCCAGAGCATACACTGTTCAATTTGGCACATGCAAGTTCCCT
GAGAACTTCACAGGCTGCCAAGATCTTGCCAAGCAAAAGAAAGTGCCATT
CATCTCGGATGATTTGGAATTGGAGTGCAAAGGGAAAGATAAATACAAGT
GTGGTTCCAATGTTTTCTGGAAATGGTGAAGTGGGACAACTGATCTCTAT
AAACATTTTATTTTACCCTCCCATGTATCTAAGTTTCCATTGAAGAAGCT
GTACTTGCGCTTATCTGTGTGTTATATATGTCTGCTCAGTATCTTCTTAT
ATACTCATCATGTTTATGCCTTTTTAGAAGATAATTGGGGCTAGTTATGT
CAAAAAAAAAAAAAAAAAAAA
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