CX671336

Overview
NameCX671336
Unique NameCX671336
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length799
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5104 contig Csv1_Contig5104:211..1009. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX671336 vs. ExPASy Swiss-Prot
Match: APMAP_RAT (Adipocyte plasma membrane-associated protein OS=Rattus norvegicus GN=Apmap PE=2 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 5.206e-26
Identity = 70/205 (34.15%), Postives = 115/205 (56.10%), Query Frame = -2
Query:  184 LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDAR----RMKVLNSSKLIKHVLAAYPKLFSRFITL---GGGAHLINVAEDGTIIRNLVDPTGQLMSFVTSGLQVDDHLYMISLTSNFIGKVQL 777
            +YFT SSSK+   +Y L ++EG   G+LL+YD  +    ++ D   F NGV LS +ED+V+V E+   R R+ ++ G  KG  + F EN+PG PDNI  +  G +W+A   + A      +  L+    IK ++    KLFS+   +      + ++ V++ G   R+L DP GQ++++V+   + D +LY+ S  S FI ++ L
Sbjct:  172 IYFTDSSSKWQRRDYLLLVMEGTDDGRLLEYDTVTKEVKVLLDQLQFPNGVQLSPEEDFVLVAETAMARIRRVYVSGLMKGGADMFVENMPGFPDNIRPSSSGGYWVAAATIRANPGFSMLDFLSDKPFIKRMIF---KLFSQETVMKFVPRYSLVLEVSDSGAFRRSLHDPDGQVVTYVSEAHEHDGYLYLGSFRSPFICRLSL 373          
BLAST of CX671336 vs. ExPASy Swiss-Prot
Match: APMAP_BOVIN (Adipocyte plasma membrane-associated protein OS=Bos taurus GN=APMAP PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 5.206e-26
Identity = 67/205 (32.68%), Postives = 117/205 (57.07%), Query Frame = -2
Query:  184 LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDAR----RMKVLNSSKLIKHVLAAYPKLFSRFITL---GGGAHLINVAEDGTIIRNLVDPTGQLMSFVTSGLQVDDHLYMISLTSNFIGKVQL 777
            +YFT SSSK+   +Y L ++EG   G+LL+YD  +    ++ D   F NGV LS  ED+V+V E    R R++++ G  KG  + F ENLPG PDNI  +  G +W+++  + A      +  L+    +K V+    KLFS+   +      + ++ +++ GT +R+L DP GQ++++V+   +   HLY+ S  + ++ +++L
Sbjct:  211 IYFTDSSSKWQRRDYLLLLMEGTDDGRLLEYDTQTKEVKVLLDHLRFPNGVQLSPAEDFVLVVELAMVRIRRFYVSGLMKGGADVFVENLPGFPDNIRASSSGGYWVSMAAIRANPGFSMLDFLSERPFLKKVIF---KLFSQETVMKFVPRYSLVLELSDSGTFLRSLHDPEGQVVTYVSEAHEHSGHLYLGSFRAPYLCRLRL 412          
BLAST of CX671336 vs. ExPASy Swiss-Prot
Match: APMAP_MOUSE (Adipocyte plasma membrane-associated protein OS=Mus musculus GN=Apmap PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.375e-25
Identity = 68/205 (33.17%), Postives = 114/205 (55.61%), Query Frame = -2
Query:  184 LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDAR----RMKVLNSSKLIKHVLAAYPKLFSRFITL---GGGAHLINVAEDGTIIRNLVDPTGQLMSFVTSGLQVDDHLYMISLTSNFIGKVQL 777
            +YFT SSSK+   +Y L ++E    G+LL+YD  +    ++ D   F NGV LS +ED+V+V E+   R R+ ++ G  KG  + F EN+PG PDNI  +  G +W+A   + A      +  L+    IK ++    K+FS+   +      + ++ V++ G   R+L DP GQ++++V+   + D +LY+ S  S FI ++ L
Sbjct:  211 IYFTDSSSKWQRRDYLLLVMEATDDGRLLEYDTVTKEVKVLLDQLQFPNGVQLSPEEDFVLVAETTMARIRRVYVSGLMKGGADMFVENMPGFPDNIRPSSSGGYWVAAATIRANPGFSMLDFLSDKPFIKRMIF---KMFSQETVMKFVPRYSLVLEVSDSGAFRRSLHDPDGQVVTYVSEAHEHDGYLYLGSFRSPFICRLSL 412          
BLAST of CX671336 vs. ExPASy Swiss-Prot
Match: APMAP_SALSA (Adipocyte plasma membrane-associated protein OS=Salmo salar GN=apmap PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.086e-23
Identity = 66/206 (32.04%), Postives = 113/206 (54.85%), Query Frame = -2
Query:  181 LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDAR----RMKVLNSSKLIKHVLAAYPKLFSRFITL---GGGAHLINVAEDGTIIRNLVDPTGQLMSFVTSGLQVDDHLYMISLTSNFIGKVQLS 777
            +YFT SSS++   +Y   I+E    G++L+YD  +   T++ +   FANG+ L  DE+ V+V E+   R R+  + G  KG ++TF +NLPG PDNI  +  G +W+A+  +        +  L+    IK ++    KLFS+ + +      + +I + E G  +R+  DP G + ++V+   + D HLY+ S  S ++ K+ LS
Sbjct:  212 VYFTDSSSRWQRRDYLHLIMEATADGRVLEYDTETKEVTVLMENLRFANGIQLFPDEESVLVAETTMARIRRVHVSGLNKGGMDTFVDNLPGFPDNIRRSSSGGYWVAMSAVRPNPGFSMLDFLSQKPWIKKLIF---KLFSQDVLMKFVPRYSLVIELQESGACMRSFHDPHGMVAAYVSEAHEHDGHLYLGSFRSPYLCKLDLS 414          
BLAST of CX671336 vs. ExPASy Swiss-Prot
Match: APMAP_CHICK (Adipocyte plasma membrane-associated protein OS=Gallus gallus GN=APMAP PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.418e-23
Identity = 66/204 (32.35%), Postives = 112/204 (54.90%), Query Frame = -2
Query:  184 LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDAR----RMKVLNSSKLIKHVLAAYPKLFSRFIT--LGGGAHLINVAEDGTIIRNLVDPTGQLMSFVTSGLQVDDHLYMISLTSNFIGKVQL 777
            +YFT SSSK+   ++   ++EG   G+LL+YD  +    ++  G  F NGV LS  ED+V+V E+   R R+Y++ G  KG  + F EN+PG PDNI L+  G +W+A+  +        +  L+    IK ++  +  L    +T  L   + ++ ++E G+  R+  DPTG  + +V+   + + +LY+ S  S FI ++ L
Sbjct:  211 IYFTDSSSKWQRRDFLFLVMEGTDDGRLLEYDTVTKEVKVLMVGLRFPNGVQLSPAEDFVLVLETAMARIRRYYVSGLMKGGADMFVENMPGLPDNIRLSSSGGYWVAMPVVRPNPGFSMLDFLSEKPWIKRMI--FKLLSQETVTKLLPKRSLVVELSETGSYRRSFHDPTGLTVPYVSEAHEHNGYLYLGSFRSPFICRLNL 412          
BLAST of CX671336 vs. ExPASy Swiss-Prot
Match: APMAP_HUMAN (Adipocyte plasma membrane-associated protein OS=Homo sapiens GN=APMAP PE=1 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 7.037e-23
Identity = 65/205 (31.71%), Postives = 111/205 (54.15%), Query Frame = -2
Query:  184 LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDAR----RMKVLNSSKLIKHVLAAYPKLFSRFITL---GGGAHLINVAEDGTIIRNLVDPTGQLMSFVTSGLQVDDHLYMISLTSNFIGKVQL 777
            +YFT SSSK+   +Y L ++EG   G+LL+YD  +    ++ D   F NGV LS  ED+V+V E+   R R+ ++ G  KG  + F EN+PG PDNI  +  G +W+ +  +        +  L+    IK ++    KLFS+   +      + ++ +++ G   R+L DP G + ++++   + D HLY+ S  S F+ ++ L
Sbjct:  212 IYFTDSSSKWQRRDYLLLVMEGTDDGRLLEYDTVTREVKVLLDQLRFPNGVQLSPAEDFVLVAETTMARIRRVYVSGLMKGGADLFVENMPGFPDNIRPSSSGGYWVGMSTIRPNPGFSMLDFLSERPWIKRMIF---KLFSQETVMKFVPRYSLVLELSDSGAFRRSLHDPDGLVATYISEVHEHDGHLYLGSFRSPFLCRLSL 413          
BLAST of CX671336 vs. ExPASy Swiss-Prot
Match: APMAP_DANRE (Adipocyte plasma membrane-associated protein OS=Danio rerio GN=apmap PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 6.586e-21
Identity = 61/206 (29.61%), Postives = 109/206 (52.91%), Query Frame = -2
Query:  181 LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDAR----RMKVLNSSKLIKHVLAAYPKLFSRFITL---GGGAHLINVAEDGTIIRNLVDPTGQLMSFVTSGLQVDDHLYMISLTSNFIGKVQLS 777
            +YFT SSS++   ++   I+E    G++L+YD  +    ++ +   F NG+ L  DE+ V+V E+   R ++  + G  KG ++TF ENLPG PDNI  +  G +W+A+  +        +  L+    +K ++    KLFS+   L      + ++ +  DGT +R+  DP G + ++ +   +   HLY+ S  S ++ K+ LS
Sbjct:  211 VYFTDSSSRWQRRDFMHLIMEATADGRVLEYDTETKEVNVMMENLRFPNGIQLFPDEESVLVAETTMARIKRVHVSGLNKGGMDTFIENLPGFPDNIRRSSSGGYWVAMSAVRPNPGFSMLDFLSQRPWLKKLIF---KLFSQDTLLKFVPRYSLVVELQSDGTCVRSFHDPQGLVSAYSSEAHEYSGHLYLGSFRSPYLCKLDLS 413          
BLAST of CX671336 vs. ExPASy Swiss-Prot
Match: STS1_ARATH (Strictosidine synthase 1 OS=Arabidopsis thaliana GN=SS1 PE=2 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.737e-13
Identity = 39/118 (33.05%), Postives = 67/118 (56.78%), Query Frame = -2
Query:  448 VEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNI-NLAPDGTFWIAII 798
            V+ + G +YFT  SS++ P +  + +      G+L KYDPS+ + T++ +G   + G A+S D  +V+V +  K   ++YW+KG + G  E F  ++   PDNI  +   G FW+A +
Sbjct:  150 VDPTTGVVYFTSFSSRFSPIQVLIALGLKDATGKLYKYDPSTKVVTVLMEGLSGSAGCAVSSDGSFVLVSQFTKSNIKRYWIKGPKAGSSEDFTNSVSN-PDNIKRIGSTGNFWVASV 266          
BLAST of CX671336 vs. ExPASy Swiss-Prot
Match: STS3_ARATH (Strictosidine synthase 3 OS=Arabidopsis thaliana GN=SS3 PE=2 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 8.622e-13
Identity = 38/118 (32.20%), Postives = 63/118 (53.39%), Query Frame = -2
Query:  448 VEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNI-NLAPDGTFWIAII 798
            V+ + G +YFT  SS + P +    +      G+  KYDPS  + T++ +G   + G A+S D  +V+V +  K   ++YW+KG + G  E F  ++   PDNI  +   G FW+A +
Sbjct:  152 VDPTTGVVYFTSFSSTFGPRDVLKAVATKDSTGKFFKYDPSKKVVTVLMEGLSGSAGCAVSSDGSFVLVGQFTKSNIKRYWIKGSKAGTSEDFTNSVSN-PDNIKRIGSTGNFWVASV 268          
The following BLAST results are available for this feature:
BLAST of CX671336 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
APMAP_RAT5.206e-2634.15Adipocyte plasma membrane-associated protein OS=Ra... [more]
APMAP_BOVIN5.206e-2632.68Adipocyte plasma membrane-associated protein OS=Bo... [more]
APMAP_MOUSE3.375e-2533.17Adipocyte plasma membrane-associated protein OS=Mu... [more]
APMAP_SALSA1.086e-2332.04Adipocyte plasma membrane-associated protein OS=Sa... [more]
APMAP_CHICK2.418e-2332.35Adipocyte plasma membrane-associated protein OS=Ga... [more]
APMAP_HUMAN7.037e-2331.71Adipocyte plasma membrane-associated protein OS=Ho... [more]
APMAP_DANRE6.586e-2129.61Adipocyte plasma membrane-associated protein OS=Da... [more]
STS1_ARATH1.737e-1333.05Strictosidine synthase 1 OS=Arabidopsis thaliana G... [more]
STS3_ARATH8.622e-1332.20Strictosidine synthase 3 OS=Arabidopsis thaliana G... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS10_10E01_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-10E01-I2-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671336 ID=CX671336; Name=CX671336; organism=Citrus sinensis; type=EST; length=799bp
CCACGATTGAGTTCACTATTTATTATTAAGGGCAATCCTCCGCTATTATC
AAGATTAGTCACTACACCCATTCAACAGGGTTATAAGAACATAAACACAC
CTTAATACTGATTTAATCAATTCGGGAACAGAGTTTTCCCTGAGGAAACC
ATTTTCTCTCGACACAAGTTATGCAGCTTAACTCAGTTGCACTTTCCCTA
TGAAGTTAGAGGTGAGGCTAATCATGTAGAGATGATCATCAACCTGCAAG
CCTGAGGTCACAAACGACATCAACTGTCCGGTAGGATCAACAAGATTTCT
GATTATAGTGCCATCTTCTGCAACATTTATTAAGTGTGCTCCGCCGCCTA
AGGTGATGAATCGAGAGAACAGTTTCGGATATGCTGCTAGAACATGTTTG
ATTAGCTTGGAACTGTTTAAAACCTTCATCCTCCTAGCATCCAACTTTAT
TATTGCAATCCAAAATGTGCCATCTGGGGCAAGGTTGATGTTATCAGGTG
CACCTGGTAGGTTTTCAGCGAAAGTTTCTAATTTCCCTTTACGCTCGCCC
TTCAGCCAATACTTACGGCACCTGAATTTCCATGATTCACAAACAACAAC
ATAATCTTCATCTCTTGAGAGTGCAACGCCATTAGCAAAGTAGAAACCAT
CAGCCACAAGTGTTGTTATATTGGATGAAGGATCATACTTGAGTAGCTGA
CCATGAGGTTTCCCCTCAAGAATATCCAGGCAATACTCGTGGGGTAAATA
TTTGGAGCTTGATACAGTAAAATATAAACTACCATCTGATGCTTCAACT
back to top