CX671328

Overview
NameCX671328
Unique NameCX671328
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length787
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX671328_ssr29 microsatellite CX671328_ssr29:29..40. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig308 contig Csv1_Contig308:37..823. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX671328 vs. ExPASy Swiss-Prot
Match: EIF3E_RAT (Eukaryotic translation initiation factor 3 subunit E OS=Rattus norvegicus GN=Eif3e PE=2 SV=1)

HSP 1 Score: 252.292 bits (643), Expect = 2.249e-66
Identity = 123/238 (51.68%), Postives = 175/238 (73.53%), Query Frame = 1 
Query:   79 MATYDLTQRIAPNLDRHLVFPLLEFLQERQMYPDEQILKSKIELLNKTNMVDYAMDIHKSLYHTEDVPQDMVERRVEVVARLKALEERAAPIVSFLQNPNSFQDLRA-NDQHYNLQMLNDRYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERR-LSALWGKMAAEILMQNWDIALEELNQLKEKVDDPKSFTSPLNQMQSRIWLMHWSLFIFFNHDNGRTLIIDLF 786
            MA YDLT RIA  LDRHLVFPLLEFL  +++Y ++++L+ K++LL+ TNMVD+AMD++K+LY ++D+P  + E+R  VVA+LK L+    PIV   ++P + + +++  D       L D++    + ++ LY+YAKFQ+ECGNYSGAA+YLY +R L   ++R  LS+LWGK+A+EILMQNWD A+E+L +LKE +D+  S +SPL  +Q R WL+HWSLF+FFNH  GR  IIDLF
Sbjct:    1 MAEYDLTTRIAHFLDRHLVFPLLEFLSVKEIYNEKELLQGKLDLLSDTNMVDFAMDVYKNLY-SDDIPHALREKRTTVVAQLKQLQAETEPIVKMFEDPETTRQMQSTRDGRMLFDYLADKHGFRQEYLDTLYRYAKFQYECGNYSGAAEYLYFFRVLVPATDRNALSSLWGKLASEILMQNWDAAMEDLTRLKETIDN-NSVSSPLQSLQQRTWLIHWSLFVFFNHPKGRDNIIDLF 236
[Close]
BLAST of CX671328 vs. ExPASy Swiss-Prot
Match: EIF3E_PONAB (Eukaryotic translation initiation factor 3 subunit E OS=Pongo abelii GN=EIF3E PE=2 SV=2)

HSP 1 Score: 252.292 bits (643), Expect = 2.249e-66
Identity = 123/238 (51.68%), Postives = 175/238 (73.53%), Query Frame = 1 
Query:   79 MATYDLTQRIAPNLDRHLVFPLLEFLQERQMYPDEQILKSKIELLNKTNMVDYAMDIHKSLYHTEDVPQDMVERRVEVVARLKALEERAAPIVSFLQNPNSFQDLRA-NDQHYNLQMLNDRYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERR-LSALWGKMAAEILMQNWDIALEELNQLKEKVDDPKSFTSPLNQMQSRIWLMHWSLFIFFNHDNGRTLIIDLF 786
            MA YDLT RIA  LDRHLVFPLLEFL  +++Y ++++L+ K++LL+ TNMVD+AMD++K+LY ++D+P  + E+R  VVA+LK L+    PIV   ++P + + +++  D       L D++    + ++ LY+YAKFQ+ECGNYSGAA+YLY +R L   ++R  LS+LWGK+A+EILMQNWD A+E+L +LKE +D+  S +SPL  +Q R WL+HWSLF+FFNH  GR  IIDLF
Sbjct:    1 MAEYDLTTRIAHFLDRHLVFPLLEFLSVKEIYNEKELLQGKLDLLSDTNMVDFAMDVYKNLY-SDDIPHALREKRTTVVAQLKQLQAETEPIVKMFEDPETTRQMQSTRDGRMLFDYLADKHGFRQEYLDTLYRYAKFQYECGNYSGAAEYLYFFRVLVPATDRNALSSLWGKLASEILMQNWDAAMEDLTRLKETIDN-NSVSSPLQSLQQRTWLIHWSLFVFFNHPKGRDNIIDLF 236
[Close]
BLAST of CX671328 vs. ExPASy Swiss-Prot
Match: EIF3E_MOUSE (Eukaryotic translation initiation factor 3 subunit E OS=Mus musculus GN=Eif3e PE=1 SV=1)

HSP 1 Score: 252.292 bits (643), Expect = 2.249e-66
Identity = 123/238 (51.68%), Postives = 175/238 (73.53%), Query Frame = 1 
Query:   79 MATYDLTQRIAPNLDRHLVFPLLEFLQERQMYPDEQILKSKIELLNKTNMVDYAMDIHKSLYHTEDVPQDMVERRVEVVARLKALEERAAPIVSFLQNPNSFQDLRA-NDQHYNLQMLNDRYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERR-LSALWGKMAAEILMQNWDIALEELNQLKEKVDDPKSFTSPLNQMQSRIWLMHWSLFIFFNHDNGRTLIIDLF 786
            MA YDLT RIA  LDRHLVFPLLEFL  +++Y ++++L+ K++LL+ TNMVD+AMD++K+LY ++D+P  + E+R  VVA+LK L+    PIV   ++P + + +++  D       L D++    + ++ LY+YAKFQ+ECGNYSGAA+YLY +R L   ++R  LS+LWGK+A+EILMQNWD A+E+L +LKE +D+  S +SPL  +Q R WL+HWSLF+FFNH  GR  IIDLF
Sbjct:    1 MAEYDLTTRIAHFLDRHLVFPLLEFLSVKEIYNEKELLQGKLDLLSDTNMVDFAMDVYKNLY-SDDIPHALREKRTTVVAQLKQLQAETEPIVKMFEDPETTRQMQSTRDGRMLFDYLADKHGFRQEYLDTLYRYAKFQYECGNYSGAAEYLYFFRVLVPATDRNALSSLWGKLASEILMQNWDAAMEDLTRLKETIDN-NSVSSPLQSLQQRTWLIHWSLFVFFNHPKGRDNIIDLF 236
[Close]
BLAST of CX671328 vs. ExPASy Swiss-Prot
Match: EIF3E_MACFA (Eukaryotic translation initiation factor 3 subunit E OS=Macaca fascicularis GN=EIF3E PE=2 SV=1)

HSP 1 Score: 252.292 bits (643), Expect = 2.249e-66
Identity = 123/238 (51.68%), Postives = 175/238 (73.53%), Query Frame = 1 
Query:   79 MATYDLTQRIAPNLDRHLVFPLLEFLQERQMYPDEQILKSKIELLNKTNMVDYAMDIHKSLYHTEDVPQDMVERRVEVVARLKALEERAAPIVSFLQNPNSFQDLRA-NDQHYNLQMLNDRYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERR-LSALWGKMAAEILMQNWDIALEELNQLKEKVDDPKSFTSPLNQMQSRIWLMHWSLFIFFNHDNGRTLIIDLF 786
            MA YDLT RIA  LDRHLVFPLLEFL  +++Y ++++L+ K++LL+ TNMVD+AMD++K+LY ++D+P  + E+R  VVA+LK L+    PIV   ++P + + +++  D       L D++    + ++ LY+YAKFQ+ECGNYSGAA+YLY +R L   ++R  LS+LWGK+A+EILMQNWD A+E+L +LKE +D+  S +SPL  +Q R WL+HWSLF+FFNH  GR  IIDLF
Sbjct:    1 MAEYDLTTRIAHFLDRHLVFPLLEFLSVKEIYNEKELLQGKLDLLSDTNMVDFAMDVYKNLY-SDDIPHALREKRTTVVAQLKQLQAETEPIVKMFEDPETTRQMQSTRDGRMLFDYLADKHGFRQEYLDTLYRYAKFQYECGNYSGAAEYLYFFRVLVPATDRNALSSLWGKLASEILMQNWDAAMEDLTRLKETIDN-NSVSSPLQSLQQRTWLIHWSLFVFFNHPKGRDNIIDLF 236
[Close]
BLAST of CX671328 vs. ExPASy Swiss-Prot
Match: EIF3E_HUMAN (Eukaryotic translation initiation factor 3 subunit E OS=Homo sapiens GN=EIF3E PE=1 SV=1)

HSP 1 Score: 252.292 bits (643), Expect = 2.249e-66
Identity = 123/238 (51.68%), Postives = 175/238 (73.53%), Query Frame = 1 
Query:   79 MATYDLTQRIAPNLDRHLVFPLLEFLQERQMYPDEQILKSKIELLNKTNMVDYAMDIHKSLYHTEDVPQDMVERRVEVVARLKALEERAAPIVSFLQNPNSFQDLRA-NDQHYNLQMLNDRYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERR-LSALWGKMAAEILMQNWDIALEELNQLKEKVDDPKSFTSPLNQMQSRIWLMHWSLFIFFNHDNGRTLIIDLF 786
            MA YDLT RIA  LDRHLVFPLLEFL  +++Y ++++L+ K++LL+ TNMVD+AMD++K+LY ++D+P  + E+R  VVA+LK L+    PIV   ++P + + +++  D       L D++    + ++ LY+YAKFQ+ECGNYSGAA+YLY +R L   ++R  LS+LWGK+A+EILMQNWD A+E+L +LKE +D+  S +SPL  +Q R WL+HWSLF+FFNH  GR  IIDLF
Sbjct:    1 MAEYDLTTRIAHFLDRHLVFPLLEFLSVKEIYNEKELLQGKLDLLSDTNMVDFAMDVYKNLY-SDDIPHALREKRTTVVAQLKQLQAETEPIVKMFEDPETTRQMQSTRDGRMLFDYLADKHGFRQEYLDTLYRYAKFQYECGNYSGAAEYLYFFRVLVPATDRNALSSLWGKLASEILMQNWDAAMEDLTRLKETIDN-NSVSSPLQSLQQRTWLIHWSLFVFFNHPKGRDNIIDLF 236
[Close]
BLAST of CX671328 vs. ExPASy Swiss-Prot
Match: EIF3E_BOVIN (Eukaryotic translation initiation factor 3 subunit E OS=Bos taurus GN=EIF3E PE=2 SV=1)

HSP 1 Score: 252.292 bits (643), Expect = 2.249e-66
Identity = 123/238 (51.68%), Postives = 175/238 (73.53%), Query Frame = 1 
Query:   79 MATYDLTQRIAPNLDRHLVFPLLEFLQERQMYPDEQILKSKIELLNKTNMVDYAMDIHKSLYHTEDVPQDMVERRVEVVARLKALEERAAPIVSFLQNPNSFQDLRA-NDQHYNLQMLNDRYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERR-LSALWGKMAAEILMQNWDIALEELNQLKEKVDDPKSFTSPLNQMQSRIWLMHWSLFIFFNHDNGRTLIIDLF 786
            MA YDLT RIA  LDRHLVFPLLEFL  +++Y ++++L+ K++LL+ TNMVD+AMD++K+LY ++D+P  + E+R  VVA+LK L+    PIV   ++P + + +++  D       L D++    + ++ LY+YAKFQ+ECGNYSGAA+YLY +R L   ++R  LS+LWGK+A+EILMQNWD A+E+L +LKE +D+  S +SPL  +Q R WL+HWSLF+FFNH  GR  IIDLF
Sbjct:    1 MAEYDLTTRIAHFLDRHLVFPLLEFLSVKEIYNEKELLQGKLDLLSDTNMVDFAMDVYKNLY-SDDIPHALREKRTTVVAQLKQLQAETEPIVKMFEDPETTRQMQSTRDGRMLFDYLADKHGFRQEYLDTLYRYAKFQYECGNYSGAAEYLYFFRVLVPATDRNALSSLWGKLASEILMQNWDAAMEDLTRLKETIDN-NSVSSPLQSLQQRTWLIHWSLFVFFNHPKGRDNIIDLF 236
[Close]
BLAST of CX671328 vs. ExPASy Swiss-Prot
Match: EI3EB_DANRE (Eukaryotic translation initiation factor 3 subunit E-B OS=Danio rerio GN=eif3eb PE=2 SV=2)

HSP 1 Score: 251.136 bits (640), Expect = 5.010e-66
Identity = 117/238 (49.16%), Postives = 177/238 (74.37%), Query Frame = 1 
Query:   79 MATYDLTQRIAPNLDRHLVFPLLEFLQERQMYPDEQILKSKIELLNKTNMVDYAMDIHKSLYHTEDVPQDMVERRVEVVARLKALEERAAPIVSFLQNPNSFQDLRA-NDQHYNLQMLNDRYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERR-LSALWGKMAAEILMQNWDIALEELNQLKEKVDDPKSFTSPLNQMQSRIWLMHWSLFIFFNHDNGRTLIIDLF 786
            MA YDLT RIA  LDRHLVFPLLEFL  +++Y ++++L+ K++LL++TNMVD+AMD++K+LY  +++P  + ++R  VVA+LK L+    PIV   ++P + + +++  D     + L D++    + ++ LY+YAKFQ+ECGNYSGAA+YLY +R L  +++R  LS+LWGK+A+EILMQNW+ A+E+L +L+E +D+  + +SPL  +Q R WL+HWSLF+FFNH  GR  II+LF
Sbjct:    1 MAEYDLTTRIAHFLDRHLVFPLLEFLSVKEIYNEKELLQGKLDLLSETNMVDFAMDVYKNLYPDKEIPHSLRDKRTTVVAQLKQLQSETEPIVKMFEDPETQRQMQSTRDGRMLFEYLADKHSFRQEYLDTLYRYAKFQYECGNYSGAAEYLYFFRVLVPSTDRNALSSLWGKLASEILMQNWEAAMEDLTRLRETIDN-NTVSSPLQSLQQRTWLIHWSLFVFFNHPKGRDNIIELF 237
[Close]
BLAST of CX671328 vs. ExPASy Swiss-Prot
Match: EIF3E_NEMVE (Eukaryotic translation initiation factor 3 subunit E OS=Nematostella vectensis GN=v1g163572 PE=3 SV=1)

HSP 1 Score: 248.825 bits (634), Expect = 2.486e-65
Identity = 122/237 (51.48%), Postives = 167/237 (70.46%), Query Frame = 1 
Query:   79 MATYDLTQRIAPNLDRHLVFPLLEFLQERQMYPDEQILKSKIELLNKTNMVDYAMDIHKSLYHTEDVPQDMVERRVEVVARLKALEERAAPIVSFLQNPN-SFQDLRANDQHYNLQMLNDRYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSE-RRLSALWGKMAAEILMQNWDIALEELNQLKEKVDDPKSFTSPLNQMQSRIWLMHWSLFIFFNHDNGRTLIIDL 783
            MA +DLT ++   LDRHLVFPLLEFL  +++Y + ++LK K++LL+ TNMVD+AMD++K LY  E+VP  +VE+RVEVV  LK L+ +  PI++   +P  + Q     D     + L   + I P+ ++ LY++AKFQ+ECGNYSGAA+YLY YRAL    +   L+ALWGK+A+EILMQNWD ALE+LN+LK+ ++   S    L  +Q R WL+HWSLF+FFNH  GR LIIDL
Sbjct:    1 MAEHDLTSKMGCFLDRHLVFPLLEFLSVKEIYDEHELLKGKLDLLSNTNMVDFAMDVYKGLYPDEEVPTSLVEKRVEVVKELKDLQAQTEPIINCFSDPEFTAQVQSTRDGRQLFEYLERNHDIKPEMLDVLYKFAKFQYECGNYSGAAEYLYFYRALAPGGDTNSLNALWGKLASEILMQNWDTALEDLNRLKDVIESNTS-AGTLQLLQERTWLIHWSLFVFFNHPKGRDLIIDL 236
[Close]
BLAST of CX671328 vs. ExPASy Swiss-Prot
Match: EI3EA_XENLA (Eukaryotic translation initiation factor 3 subunit E-A OS=Xenopus laevis GN=eif3e-A PE=2 SV=1)

HSP 1 Score: 248.825 bits (634), Expect = 2.486e-65
Identity = 119/238 (50.00%), Postives = 174/238 (73.11%), Query Frame = 1 
Query:   79 MATYDLTQRIAPNLDRHLVFPLLEFLQERQMYPDEQILKSKIELLNKTNMVDYAMDIHKSLYHTEDVPQDMVERRVEVVARLKALEERAAPIVSFLQNPNSFQDLRA-NDQHYNLQMLNDRYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERR-LSALWGKMAAEILMQNWDIALEELNQLKEKVDDPKSFTSPLNQMQSRIWLMHWSLFIFFNHDNGRTLIIDLF 786
            MA YDLT +IA  LDRHLVFPLLEFL  +++Y ++++L  K++LL+ TNMVD+AMD++K+LY  +++P  + E+R  VVA+LK L+    PIV   ++P + + +++  D       L +++    + ++ LY+YAKFQ+ECGNYSGAA+YLY +R L  +++R  LS+LWGK+A+EILMQNWD A+E+L +LKE +D+  + +SPL  +Q R WL+HWSLF+FFNH  GR  IIDLF
Sbjct:    1 MADYDLTTKIAQFLDRHLVFPLLEFLSVKEIYNEKELLHGKLDLLSDTNMVDFAMDVYKNLYADKEIPLALREKRTTVVAQLKQLQAETEPIVKMFEDPETTRQMQSTRDGRMLFDHLAEKHGFRQEYLDTLYRYAKFQYECGNYSGAAEYLYFFRVLVPSTDRNALSSLWGKLASEILMQNWDAAMEDLTRLKETIDN-NTVSSPLQSLQHRTWLIHWSLFVFFNHPKGRDNIIDLF 237
[Close]
BLAST of CX671328 vs. ExPASy Swiss-Prot
Match: EIF3E_XENTR (Eukaryotic translation initiation factor 3 subunit E OS=Xenopus tropicalis GN=eif3e PE=2 SV=1)

HSP 1 Score: 248.44 bits (633), Expect = 3.247e-65
Identity = 118/238 (49.58%), Postives = 174/238 (73.11%), Query Frame = 1 
Query:   79 MATYDLTQRIAPNLDRHLVFPLLEFLQERQMYPDEQILKSKIELLNKTNMVDYAMDIHKSLYHTEDVPQDMVERRVEVVARLKALEERAAPIVSFLQNPNSFQDLRA-NDQHYNLQMLNDRYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERR-LSALWGKMAAEILMQNWDIALEELNQLKEKVDDPKSFTSPLNQMQSRIWLMHWSLFIFFNHDNGRTLIIDLF 786
            MA YDLT +IA  LDRHLVFPLLEFL  +++Y ++++ + K++LL+ TNMVD+AMD++K+LY  +++P  + E+R  VVA+LK L+    PIV   ++P + + +++  D       L +++    + ++ LY+YAKFQ+ECGNYSGAA+YLY +R L  +++R  LS+LWGK+A+EILMQNWD A+E+L +LKE +D+  + +SPL  +Q R WL+HWSLF+FFNH  GR  IIDLF
Sbjct:    1 MAEYDLTTKIAHFLDRHLVFPLLEFLSVKEIYNEKELFQGKLDLLSDTNMVDFAMDVYKNLYADKEIPHALREKRTTVVAQLKQLQAETEPIVKMFEDPETTRQMQSTRDGRMLFDHLAEKHGFRQEYLDTLYRYAKFQYECGNYSGAAEYLYFFRVLVPSTDRNALSSLWGKLASEILMQNWDAAMEDLTRLKETIDN-NTVSSPLQSLQHRTWLIHWSLFVFFNHPKGRDNIIDLF 237
The following BLAST results are available for this feature:
BLAST of CX671328 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
EIF3E_RAT2.249e-6651.68Eukaryotic translation initiation factor 3 subunit... [more]
EIF3E_PONAB2.249e-6651.68Eukaryotic translation initiation factor 3 subunit... [more]
EIF3E_MOUSE2.249e-6651.68Eukaryotic translation initiation factor 3 subunit... [more]
EIF3E_MACFA2.249e-6651.68Eukaryotic translation initiation factor 3 subunit... [more]
EIF3E_HUMAN2.249e-6651.68Eukaryotic translation initiation factor 3 subunit... [more]
EIF3E_BOVIN2.249e-6651.68Eukaryotic translation initiation factor 3 subunit... [more]
EI3EB_DANRE5.010e-6649.16Eukaryotic translation initiation factor 3 subunit... [more]
EIF3E_NEMVE2.486e-6551.48Eukaryotic translation initiation factor 3 subunit... [more]
EI3EA_XENLA2.486e-6550.00Eukaryotic translation initiation factor 3 subunit... [more]
EIF3E_XENTR3.247e-6549.58Eukaryotic translation initiation factor 3 subunit... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_10D09_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-10D09-G18-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671328 ID=CX671328; Name=CX671328; organism=Citrus sinensis; type=EST; length=787bp
CTCAGTTTGCTCTTCGTCTACAGAAGAACAGCAGCAGCAGACGCCGCTGC
CGCCGAGGAACGAAATTTCAACGCGACAATGGCGACGTACGATTTGACAC
AGAGAATCGCGCCGAATCTGGACCGGCATCTGGTGTTTCCGCTGCTGGAG
TTTCTCCAAGAGCGGCAGATGTACCCGGACGAGCAGATTCTGAAATCGAA
GATAGAGCTCTTGAACAAGACGAACATGGTCGACTACGCGATGGACATCC
ACAAGAGCCTCTACCACACCGAAGACGTCCCGCAGGATATGGTCGAGCGG
AGGGTCGAGGTCGTCGCTCGTTTGAAGGCCCTGGAGGAGCGCGCCGCCCC
GATCGTTTCGTTCTTGCAGAACCCTAACTCCTTTCAAGATTTGAGAGCTA
ATGACCAGCACTACAATTTGCAGATGCTTAACGACCGTTACCAGATTGGC
CCGGATCAGATCGAGGCGCTTTATCAGTATGCCAAATTTCAGTTTGAATG
TGGGAACTACTCTGGGGCTGCTGACTATCTGTACCAGTACAGGGCCTTGT
GCACAAACAGTGAAAGGAGGCTGAGTGCATTATGGGGAAAAATGGCGGCT
GAGATATTGATGCAGAATTGGGATATTGCTCTTGAAGAACTTAATCAATT
AAAGGAAAAAGTTGATGACCCAAAGAGTTTCACTTCACCTTTAAATCAGA
TGCAGAGTAGGATATGGCTAATGCATTGGAGTCTCTTCATCTTTTTCAAT
CATGATAATGGAAGAACACTGATCATTGACTTGTTCA
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