CX671327

Overview
NameCX671327
Unique NameCX671327
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length813
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig308 contig Csv1_Contig308:823..1635. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX671327 vs. ExPASy Swiss-Prot
Match: EIF3E_NEMVE (Eukaryotic translation initiation factor 3 subunit E OS=Nematostella vectensis GN=v1g163572 PE=3 SV=1)

HSP 1 Score: 241.891 bits (616), Expect = 3.226e-63
Identity = 120/192 (62.50%), Postives = 147/192 (76.56%), Query Frame = -1
Query:  235 QDKYLNAIQTNAPHLLRYLATAFIVNKRRRPQFKDFIKVIQQEQNSYKDPITEFLACVYVNYDFDGAQKKMKECEEVILNDPFLGKRVEDSNFATVPLRDEFLENARLFIFETYCRIHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSGTVIMEPTQPNVYEQLIDHTKGLSGRTYKLVGQL 810
            Q +YLNAIQT  PH+LRYL TA I NKRRRP  KD +KVIQQE  +Y+DPITEFL C+YVN+DFDGAQKK++ECE V+LND FL           V  RD+F+ENARLFIFET+CRIHQ I +++LAEKLN+  EEA+RWIVNLIRN+KLDAKID+K G V+M    P+VY+Q+I+ TK L  +T  L G +
Sbjct:  240 QPQYLNAIQTMCPHILRYLTTAVITNKRRRPVLKDLVKVIQQESYTYRDPITEFLECLYVNFDFDGAQKKLRECETVLLNDFFL-----------VACRDDFIENARLFIFETFCRIHQCISISMLAEKLNMTPEEAERWIVNLIRNAKLDAKIDSKLGHVVMGVQAPSVYQQVIEKTKNLQYKTQVLAGNI 420          
BLAST of CX671327 vs. ExPASy Swiss-Prot
Match: EI3EA_XENLA (Eukaryotic translation initiation factor 3 subunit E-A OS=Xenopus laevis GN=eif3e-A PE=2 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 6.514e-56
Identity = 112/203 (55.17%), Postives = 146/203 (71.92%), Query Frame = -1
Query:  211 QDKYLNAIQTNAPHLLRYLATAFIVNK---RRRPQFKDFIKVIQQEQNSYKDPITEFLACVYVNYDFDGAQKKMKECEEVILNDPFLGKRVEDSNFATVPLRDEFLENARLFIFETYCRIHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSGTVIMEPTQPNVYEQLIDHTKGLSGRTYKLVGQLLEHAQTQA 810
            Q +YLNAIQT  PH+LRYL TA I NK   +RR   KD +KVIQQE  +YKDPITEF+ C+YVN+DFDGAQKK++ECE V++ND FL   +ED           F+ENARLFIFET+CRIHQ I +++LA+KLN+  EEA+RWIVNLIRN++LDAKID+K G V+M     + Y+Q+I+ TK L+ R+  L   + +   T +
Sbjct:  240 QPQYLNAIQTMCPHILRYLTTAVITNKDVRKRRQVLKDLVKVIQQESYTYKDPITEFVECLYVNFDFDGAQKKLRECESVLVNDFFLVACLED-----------FIENARLFIFETFCRIHQCISISMLADKLNMTPEEAERWIVNLIRNARLDAKIDSKLGHVVMGNNAVSPYQQVIEKTKSLAFRSQMLAMNIEKKMNTNS 431          
BLAST of CX671327 vs. ExPASy Swiss-Prot
Match: EIF3E_XENTR (Eukaryotic translation initiation factor 3 subunit E OS=Xenopus tropicalis GN=eif3e PE=2 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 8.508e-56
Identity = 111/191 (58.12%), Postives = 142/191 (74.35%), Query Frame = -1
Query:  247 QDKYLNAIQTNAPHLLRYLATAFIVNK---RRRPQFKDFIKVIQQEQNSYKDPITEFLACVYVNYDFDGAQKKMKECEEVILNDPFLGKRVEDSNFATVPLRDEFLENARLFIFETYCRIHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSGTVIMEPTQPNVYEQLIDHTKGLSGRTYKL 810
            Q +YLNAIQT  PH+LRYL TA I NK   +RR   KD +KVIQQE  +YKDPITEF+ C+YVN+DFDGAQKK++ECE V++ND FL   +ED           F+ENARLFIFET+CRIHQ I +++LA+KLN+  EEA+RWIVNLIRN++LDAKID+K G V+M     + Y+Q+I+ TK L+ R+  L
Sbjct:  240 QPQYLNAIQTMCPHILRYLTTAVITNKDVRKRRQVLKDLVKVIQQESYTYKDPITEFVECLYVNFDFDGAQKKLRECESVLVNDFFLVACLED-----------FIENARLFIFETFCRIHQCISISMLADKLNMTPEEAERWIVNLIRNARLDAKIDSKLGHVVMGNNAVSPYQQVIEKTKSLAFRSQML 419          
BLAST of CX671327 vs. ExPASy Swiss-Prot
Match: EIF3E_RAT (Eukaryotic translation initiation factor 3 subunit E OS=Rattus norvegicus GN=Eif3e PE=2 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 8.508e-56
Identity = 112/191 (58.64%), Postives = 141/191 (73.82%), Query Frame = -1
Query:  247 QDKYLNAIQTNAPHLLRYLATAFIVNK---RRRPQFKDFIKVIQQEQNSYKDPITEFLACVYVNYDFDGAQKKMKECEEVILNDPFLGKRVEDSNFATVPLRDEFLENARLFIFETYCRIHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSGTVIMEPTQPNVYEQLIDHTKGLSGRTYKL 810
            Q +YLNAIQT  PH+LRYL TA I NK   +RR   KD +KVIQQE  +YKDPITEF+ C+YVN+DFDGAQKK++ECE V++ND FL   +ED           F+ENARLFIFET+CRIHQ I + +LA+KLN+  EEA+RWIVNLIRN++LDAKID+K G V+M     + Y+Q+I+ TK LS R+  L
Sbjct:  239 QPQYLNAIQTMCPHILRYLTTAVITNKDVRKRRQVLKDLVKVIQQESYTYKDPITEFVECLYVNFDFDGAQKKLRECESVLVNDFFLVACLED-----------FIENARLFIFETFCRIHQCISINMLADKLNMTPEEAERWIVNLIRNARLDAKIDSKLGHVVMGNNAVSPYQQVIEKTKSLSFRSQML 418          
BLAST of CX671327 vs. ExPASy Swiss-Prot
Match: EIF3E_PONAB (Eukaryotic translation initiation factor 3 subunit E OS=Pongo abelii GN=EIF3E PE=2 SV=2)

HSP 1 Score: 217.238 bits (552), Expect = 8.508e-56
Identity = 112/191 (58.64%), Postives = 141/191 (73.82%), Query Frame = -1
Query:  247 QDKYLNAIQTNAPHLLRYLATAFIVNK---RRRPQFKDFIKVIQQEQNSYKDPITEFLACVYVNYDFDGAQKKMKECEEVILNDPFLGKRVEDSNFATVPLRDEFLENARLFIFETYCRIHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSGTVIMEPTQPNVYEQLIDHTKGLSGRTYKL 810
            Q +YLNAIQT  PH+LRYL TA I NK   +RR   KD +KVIQQE  +YKDPITEF+ C+YVN+DFDGAQKK++ECE V++ND FL   +ED           F+ENARLFIFET+CRIHQ I + +LA+KLN+  EEA+RWIVNLIRN++LDAKID+K G V+M     + Y+Q+I+ TK LS R+  L
Sbjct:  239 QPQYLNAIQTMCPHILRYLTTAVITNKDVRKRRQVLKDLVKVIQQESYTYKDPITEFVECLYVNFDFDGAQKKLRECESVLVNDFFLVACLED-----------FIENARLFIFETFCRIHQCISINMLADKLNMTPEEAERWIVNLIRNARLDAKIDSKLGHVVMGNNAVSPYQQVIEKTKSLSFRSQML 418          
BLAST of CX671327 vs. ExPASy Swiss-Prot
Match: EIF3E_MOUSE (Eukaryotic translation initiation factor 3 subunit E OS=Mus musculus GN=Eif3e PE=1 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 8.508e-56
Identity = 112/191 (58.64%), Postives = 141/191 (73.82%), Query Frame = -1
Query:  247 QDKYLNAIQTNAPHLLRYLATAFIVNK---RRRPQFKDFIKVIQQEQNSYKDPITEFLACVYVNYDFDGAQKKMKECEEVILNDPFLGKRVEDSNFATVPLRDEFLENARLFIFETYCRIHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSGTVIMEPTQPNVYEQLIDHTKGLSGRTYKL 810
            Q +YLNAIQT  PH+LRYL TA I NK   +RR   KD +KVIQQE  +YKDPITEF+ C+YVN+DFDGAQKK++ECE V++ND FL   +ED           F+ENARLFIFET+CRIHQ I + +LA+KLN+  EEA+RWIVNLIRN++LDAKID+K G V+M     + Y+Q+I+ TK LS R+  L
Sbjct:  239 QPQYLNAIQTMCPHILRYLTTAVITNKDVRKRRQVLKDLVKVIQQESYTYKDPITEFVECLYVNFDFDGAQKKLRECESVLVNDFFLVACLED-----------FIENARLFIFETFCRIHQCISINMLADKLNMTPEEAERWIVNLIRNARLDAKIDSKLGHVVMGNNAVSPYQQVIEKTKSLSFRSQML 418          
BLAST of CX671327 vs. ExPASy Swiss-Prot
Match: EIF3E_MACFA (Eukaryotic translation initiation factor 3 subunit E OS=Macaca fascicularis GN=EIF3E PE=2 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 8.508e-56
Identity = 112/191 (58.64%), Postives = 141/191 (73.82%), Query Frame = -1
Query:  247 QDKYLNAIQTNAPHLLRYLATAFIVNK---RRRPQFKDFIKVIQQEQNSYKDPITEFLACVYVNYDFDGAQKKMKECEEVILNDPFLGKRVEDSNFATVPLRDEFLENARLFIFETYCRIHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSGTVIMEPTQPNVYEQLIDHTKGLSGRTYKL 810
            Q +YLNAIQT  PH+LRYL TA I NK   +RR   KD +KVIQQE  +YKDPITEF+ C+YVN+DFDGAQKK++ECE V++ND FL   +ED           F+ENARLFIFET+CRIHQ I + +LA+KLN+  EEA+RWIVNLIRN++LDAKID+K G V+M     + Y+Q+I+ TK LS R+  L
Sbjct:  239 QPQYLNAIQTMCPHILRYLTTAVITNKDVRKRRQVLKDLVKVIQQESYTYKDPITEFVECLYVNFDFDGAQKKLRECESVLVNDFFLVACLED-----------FIENARLFIFETFCRIHQCISINMLADKLNMTPEEAERWIVNLIRNARLDAKIDSKLGHVVMGNNAVSPYQQVIEKTKSLSFRSQML 418          
BLAST of CX671327 vs. ExPASy Swiss-Prot
Match: EIF3E_HUMAN (Eukaryotic translation initiation factor 3 subunit E OS=Homo sapiens GN=EIF3E PE=1 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 8.508e-56
Identity = 112/191 (58.64%), Postives = 141/191 (73.82%), Query Frame = -1
Query:  247 QDKYLNAIQTNAPHLLRYLATAFIVNK---RRRPQFKDFIKVIQQEQNSYKDPITEFLACVYVNYDFDGAQKKMKECEEVILNDPFLGKRVEDSNFATVPLRDEFLENARLFIFETYCRIHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSGTVIMEPTQPNVYEQLIDHTKGLSGRTYKL 810
            Q +YLNAIQT  PH+LRYL TA I NK   +RR   KD +KVIQQE  +YKDPITEF+ C+YVN+DFDGAQKK++ECE V++ND FL   +ED           F+ENARLFIFET+CRIHQ I + +LA+KLN+  EEA+RWIVNLIRN++LDAKID+K G V+M     + Y+Q+I+ TK LS R+  L
Sbjct:  239 QPQYLNAIQTMCPHILRYLTTAVITNKDVRKRRQVLKDLVKVIQQESYTYKDPITEFVECLYVNFDFDGAQKKLRECESVLVNDFFLVACLED-----------FIENARLFIFETFCRIHQCISINMLADKLNMTPEEAERWIVNLIRNARLDAKIDSKLGHVVMGNNAVSPYQQVIEKTKSLSFRSQML 418          
BLAST of CX671327 vs. ExPASy Swiss-Prot
Match: EIF3E_BOVIN (Eukaryotic translation initiation factor 3 subunit E OS=Bos taurus GN=EIF3E PE=2 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 8.508e-56
Identity = 112/191 (58.64%), Postives = 141/191 (73.82%), Query Frame = -1
Query:  247 QDKYLNAIQTNAPHLLRYLATAFIVNK---RRRPQFKDFIKVIQQEQNSYKDPITEFLACVYVNYDFDGAQKKMKECEEVILNDPFLGKRVEDSNFATVPLRDEFLENARLFIFETYCRIHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSGTVIMEPTQPNVYEQLIDHTKGLSGRTYKL 810
            Q +YLNAIQT  PH+LRYL TA I NK   +RR   KD +KVIQQE  +YKDPITEF+ C+YVN+DFDGAQKK++ECE V++ND FL   +ED           F+ENARLFIFET+CRIHQ I + +LA+KLN+  EEA+RWIVNLIRN++LDAKID+K G V+M     + Y+Q+I+ TK LS R+  L
Sbjct:  239 QPQYLNAIQTMCPHILRYLTTAVITNKDVRKRRQVLKDLVKVIQQESYTYKDPITEFVECLYVNFDFDGAQKKLRECESVLVNDFFLVACLED-----------FIENARLFIFETFCRIHQCISINMLADKLNMTPEEAERWIVNLIRNARLDAKIDSKLGHVVMGNNAVSPYQQVIEKTKSLSFRSQML 418          
BLAST of CX671327 vs. ExPASy Swiss-Prot
Match: EIF3E_SALSA (Eukaryotic translation initiation factor 3 subunit E OS=Salmo salar GN=eif3e PE=2 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 1.111e-55
Identity = 113/205 (55.12%), Postives = 148/205 (72.20%), Query Frame = -1
Query:  205 QDKYLNAIQTNAPHLLRYLATAFIVNK---RRRPQFKDFIKVIQQEQNSYKDPITEFLACVYVNYDFDGAQKKMKECEEVILNDPFLGKRVEDSNFATVPLRDEFLENARLFIFETYCRIHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSGTVIMEPTQPNVYEQLIDHTKGLSGRTYKLVGQLLEHAQTQAAR 810
            Q +YLNAIQT  PH+LRYL TA I NK   +RR   KD +KVIQQE  +YKDPITEF+ C+YVN+DFD AQKK++ECE V++ND FL   +ED           F+ENARLFIFET+CRIHQ I +++LA+KLN+  EEA+RWIVNLIRN++LDAKID+K G V+M     + Y+Q+I+ TK LS R+ +++   +E     A+R
Sbjct:  240 QPQYLNAIQTMCPHILRYLTTAVITNKDVRKRRQVLKDLVKVIQQESYTYKDPITEFVECLYVNFDFDSAQKKLRECESVLVNDFFLVACLED-----------FIENARLFIFETFCRIHQCISISMLADKLNMTPEEAERWIVNLIRNARLDAKIDSKLGHVVMGNNAVSPYQQVIEKTKSLSFRS-QMLAMNIEKKMAHASR 432          
The following BLAST results are available for this feature:
BLAST of CX671327 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
EIF3E_NEMVE3.226e-6362.50Eukaryotic translation initiation factor 3 subunit... [more]
EI3EA_XENLA6.514e-5655.17Eukaryotic translation initiation factor 3 subunit... [more]
EIF3E_XENTR8.508e-5658.12Eukaryotic translation initiation factor 3 subunit... [more]
EIF3E_RAT8.508e-5658.64Eukaryotic translation initiation factor 3 subunit... [more]
EIF3E_PONAB8.508e-5658.64Eukaryotic translation initiation factor 3 subunit... [more]
EIF3E_MOUSE8.508e-5658.64Eukaryotic translation initiation factor 3 subunit... [more]
EIF3E_MACFA8.508e-5658.64Eukaryotic translation initiation factor 3 subunit... [more]
EIF3E_HUMAN8.508e-5658.64Eukaryotic translation initiation factor 3 subunit... [more]
EIF3E_BOVIN8.508e-5658.64Eukaryotic translation initiation factor 3 subunit... [more]
EIF3E_SALSA1.111e-5555.12Eukaryotic translation initiation factor 3 subunit... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS10_10D09_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-10D09-G18-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671327 ID=CX671327; Name=CX671327; organism=Citrus sinensis; type=EST; length=813bp
TTTTTCAGAAAGATACATGTTAATCTTTGAATAATTAAACAAAGTTACGG
CAAACACCGAGGACATAATCATAAACTCTTCCAAAATTTGAAAGACAAAA
TGGAAATGAAATGATTTATCAATAGAATTGCTCTCTTCTGAATCTAATTA
AAGAAGCAATTTCCAGGGATGACAAAACTTGCAACAAGTACTTCTGATAA
TTTATCGTGCAGCTTGTGTTTGTGCATGTTCCAGAAGTTGACCGACTAAT
TTGTAAGTACGTCCTGAAAGTCCTTTGGTGTGGTCAATCAATTGCTCATA
CACGTTGGGTTGGGTGGGTTCCATGATAACAGTTCCCGACTTTGCATCAA
TCTTGGCATCAAGTTTTGAGTTCCGAATAAGATTCACAATCCATCTTTGA
GCTTCCTCATAATTTAGATTCAACTTCTCAGCAAGCACTGCCATATCAAT
GCGTTGATGAATTCGACAATAGGTCTCAAAGATGAATAGCCGAGCATTTT
CGAGGAACTCATCTCTCAAAGGAACAGTAGCAAAGTTGCTATCTTCAACT
CGTTTGCCAAGGAAAGGATCATTCAATATCACTTCTTCACACTCCTTCAT
CTTCTTCTGTGCCCCATCAAAGTCATAATTGACGTACACACATGCCAAAA
ACTCTGTAATGGGATCTTTGTACGAGTTTTGCTCTTGCTGGATAACCTTA
ATAAAATCTTTGAATTGAGGTCTCCTCCTTTTGTTGACAATGAATGCAGT
AGCTAAATAGCGTAAAAGATGGGGAGCATTGGTTTGAATGGCATTTAGAT
ACTTATCCTGATT
back to top